Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 0.0e+00 1178.7 608 100.0
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 6.6e-292 1006.9 529 99.4
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 6.0e-168 595.1 529 64.8
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 1.3e-167 594.0 535 64.3
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 1.1e-156 557.8 530 61.5
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 2.6e-155 553.1 565 57.7
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 9.9e-139 498.0 554 56.1
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 6.7e-135 485.3 531 55.6
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 1.7e-130 470.7 540 53.9
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 3.2e-129 466.5 555 55.1
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 6.7e-127 458.8 534 53.0
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 1.3e-125 454.5 557 54.6
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 3.1e-124 449.9 554 53.4
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 6.9e-124 448.7 562 51.8
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 6.9e-124 448.7 557 53.0
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 1.2e-123 448.0 560 51.1
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.2e-123 448.0 548 52.7
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 2.6e-123 446.8 567 51.7
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.7e-122 444.1 548 51.3
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 8.5e-122 441.8 546 52.0
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 1.4e-121 441.0 574 50.3
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 1.4e-121 441.0 604 49.5
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 2.5e-121 440.3 552 52.0
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 3.2e-121 439.9 561 51.2
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 3.2e-121 439.9 557 51.0
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 7.2e-121 438.7 550 52.4
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 7.2e-121 438.7 553 52.8
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 6.1e-120 435.6 548 50.0
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 6.1e-120 435.6 540 51.1
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 6.1e-120 435.6 575 52.0
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 1.5e-118 431.0 542 51.1
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 1.5e-118 431.0 535 52.5
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 7.4e-118 428.7 553 51.9
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 1.7e-117 427.6 553 51.7
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 2.8e-117 426.8 553 50.5
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.8e-116 424.1 548 51.8
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 4.1e-116 422.9 538 49.8
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 5.3e-116 422.5 553 50.6
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 4.5e-115 419.5 533 50.5
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 1.0e-114 418.3 556 48.6
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 1.0e-114 418.3 515 52.6
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 2.2e-114 417.2 544 49.8
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 3.8e-114 416.4 555 50.1
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 6.1e-112 409.1 559 48.7
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 7.9e-112 408.7 540 50.4
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 1.1e-110 404.8 555 49.0
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 2.6e-110 403.7 540 50.0
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 3.7e-109 399.8 536 48.9
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 8.2e-109 398.7 527 48.8
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 8.2e-109 398.7 559 46.9
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.1e-108 398.3 527 48.8
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 5.3e-108 396.0 551 46.8
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 5.3e-108 396.0 558 48.6
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 1.5e-107 394.4 572 47.9
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 2.6e-107 393.7 553 47.4
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.0e-106 391.7 548 46.0
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 1.3e-106 391.3 566 47.5
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 1.3e-106 391.3 585 46.2
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 1.7e-106 391.0 533 47.3
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 6.5e-106 389.0 527 48.0
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 1.9e-105 387.5 562 47.9
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 2.5e-105 387.1 558 48.0
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 5.5e-105 386.0 558 46.2
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 5.5e-105 386.0 547 46.8
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 1.2e-104 384.8 560 48.2
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 2.1e-104 384.0 551 47.2
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 3.6e-104 383.3 554 46.9
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 4.7e-104 382.9 573 47.5
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 1.8e-103 380.9 545 45.9
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 2.0e-102 377.5 555 49.0
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 3.3e-102 376.7 558 46.2
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 7.4e-102 375.6 633 43.8
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 2.2e-101 374.0 559 45.8
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 2.8e-101 373.6 547 49.5
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 8.2e-101 372.1 557 45.8
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 8.2e-101 372.1 560 47.3
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 1.1e-100 371.7 572 47.2
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 7.0e-100 369.0 541 45.7
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 2.9e-98 363.6 583 45.1
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 6.5e-98 362.5 540 45.2
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 8.5e-98 362.1 533 45.8
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 8.5e-98 362.1 527 45.9
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 1.9e-97 360.9 559 46.5
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 9.4e-97 358.6 425 52.2
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 1.6e-96 357.8 577 43.7
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 2.1e-96 357.5 557 44.2
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 2.1e-96 357.5 538 44.8
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 1.4e-95 354.8 537 45.3
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 2.0e-94 350.9 530 45.8
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.0e-94 350.9 541 44.4
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 3.3e-94 350.1 561 43.9
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 3.3e-94 350.1 556 44.8
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 5.7e-94 349.4 528 47.0
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 7.5e-94 349.0 533 45.0
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 9.7e-94 348.6 541 44.2
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 2.2e-93 347.4 566 43.8
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 3.7e-93 346.7 563 45.3
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 1.8e-92 344.4 557 44.3
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 5.9e-91 339.3 541 43.3
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 7.7e-91 339.0 540 44.4
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 6.5e-90 335.9 541 43.8
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 8.5e-90 335.5 539 44.2
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 1.1e-89 335.1 544 43.0
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 1.1e-89 335.1 536 43.3
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 9.4e-89 332.0 535 42.2
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 9.4e-89 332.0 557 43.8
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 1.5e-86 324.7 545 43.3
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 1.5e-86 324.7 545 43.3
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 1.6e-83 314.7 547 43.3
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 5.0e-82 309.7 357 52.4
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 1.4e-79 301.6 583 38.9
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 4.9e-77 293.1 728 35.6
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 1.4e-71 275.0 300 54.3
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 1.1e-65 255.4 306 52.3
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 8.0e-64 249.2 529 39.5
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 1.1e-63 248.8 319 47.3
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 1.4e-63 248.4 525 39.0
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 1.6e-59 235.0 525 38.3
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 1.6e-59 235.0 525 38.3
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 6.0e-59 233.0 578 36.3
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 2.3e-55 221.1 397 41.6
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 7.1e-52 209.5 601 34.1
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.1e-47 194.1 387 38.2
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 6.4e-45 186.4 176 55.7
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 6.6e-42 176.4 420 36.9
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 1.1e-39 169.1 567 32.1
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 4.0e-39 167.2 143 62.9
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.2e-38 165.6 271 41.0
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 3.2e-36 157.5 298 38.3
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 4.6e-35 153.7 545 33.0
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 7.3e-33 146.4 722 28.0
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 9.0e-31 139.4 183 47.0
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 2.0e-30 138.3 262 45.4
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 5.8e-30 136.7 229 41.9
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.3e-26 124.8 126 54.0
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 1.7e-21 108.6 199 41.2
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 3.8e-21 107.5 88 61.4
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 1.6e-19 102.1 236 36.0
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 3.5e-19 100.9 470 29.4
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.6e-16 92.0 140 42.1
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 1.5e-14 85.5 124 48.4
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 3.4e-14 84.3 92 45.7
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.2e-13 81.6 118 40.7
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 8.4e-13 79.7 520 28.1
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 1.0e-10 72.8 159 38.4
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 3.0e-10 71.2 81 53.1
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 6.7e-10 70.1 472 25.8
MELO3C034665.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.8e-08 64.7 264 28.0
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.1e-07 62.8 226 29.2
Actinidia15387 Actinidia chinensis HOM05D004539 ORTHO05D005482 4.1e-07 60.8 103 39.8


User provided reference genes

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