Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 1.0e-60 236.5 116 100.0
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 5.8e-56 220.7 116 92.2
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 1.9e-54 215.7 113 91.2
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 2.1e-53 212.2 114 89.5
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 5.1e-52 207.6 116 86.2
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 8.7e-52 206.8 116 87.1
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 1.9e-51 205.7 111 87.4
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 1.9e-51 205.7 111 87.4
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 2.5e-51 205.3 111 87.4
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 3.3e-51 204.9 111 86.5
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 4.3e-51 204.5 116 86.2
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 4.3e-51 204.5 111 86.5
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 5.7e-51 204.1 111 86.5
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 1.3e-50 203.0 114 86.0
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.3e-50 203.0 111 85.6
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.3e-50 203.0 111 85.6
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.1e-49 199.9 111 85.6
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 1.4e-49 199.5 111 84.7
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 1.5e-48 196.1 116 80.2
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 5.9e-48 194.1 113 79.6
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 1.0e-47 193.4 116 80.2
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 2.2e-47 192.2 115 79.1
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 6.5e-47 190.7 116 77.6
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 1.9e-46 189.1 113 77.9
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 2.5e-46 188.7 111 78.4
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 3.2e-46 188.3 111 78.4
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 4.2e-46 188.0 111 78.4
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 1.2e-45 186.4 116 75.0
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 1.2e-45 186.4 111 76.6
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 1.2e-45 186.4 111 77.5
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 1.2e-45 186.4 111 77.5
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 1.6e-45 186.0 114 77.2
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 1.6e-45 186.0 111 76.6
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 2.1e-45 185.7 116 73.3
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 2.1e-45 185.7 111 77.5
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 2.1e-45 185.7 116 73.3
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 2.1e-45 185.7 116 73.3
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 2.7e-45 185.3 116 74.1
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 2.7e-45 185.3 109 78.0
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 2.7e-45 185.3 111 77.5
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 6.1e-45 184.1 109 79.8
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 7.9e-45 183.7 111 77.5
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 7.9e-45 183.7 111 74.8
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 1.0e-44 183.3 111 78.4
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 1.0e-44 183.3 116 74.1
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 2.3e-44 182.2 111 73.9
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 3.0e-44 181.8 116 73.3
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 3.0e-44 181.8 116 73.3
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 3.9e-44 181.4 116 72.4
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 3.9e-44 181.4 116 74.1
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 5.1e-44 181.0 111 73.9
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 5.1e-44 181.0 111 75.7
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 6.7e-44 180.6 111 75.7
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 6.7e-44 180.6 111 76.6
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 6.7e-44 180.6 111 74.8
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 8.8e-44 180.3 116 74.1
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 8.8e-44 180.3 116 74.1
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 1.1e-43 179.9 111 73.9
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 1.1e-43 179.9 111 77.5
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 1.1e-43 179.9 111 73.9
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 1.5e-43 179.5 111 73.9
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 1.5e-43 179.5 111 73.9
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 1.5e-43 179.5 111 73.0
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 1.5e-43 179.5 109 75.2
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 2.0e-43 179.1 111 75.7
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 2.0e-43 179.1 111 74.8
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 2.0e-43 179.1 116 73.3
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 2.0e-43 179.1 111 73.9
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 2.5e-43 178.7 116 72.4
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 2.5e-43 178.7 116 75.0
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 4.3e-43 177.9 109 75.2
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 4.3e-43 177.9 116 73.3
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 5.7e-43 177.6 111 73.9
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 5.7e-43 177.6 116 73.3
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 5.7e-43 177.6 116 72.4
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 7.4e-43 177.2 116 73.3
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 7.4e-43 177.2 116 74.1
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 9.7e-43 176.8 113 72.6
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 9.7e-43 176.8 116 71.6
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 1.3e-42 176.4 117 71.8
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 1.3e-42 176.4 116 71.6
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 1.7e-42 176.0 111 73.9
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 2.2e-42 175.6 116 71.6
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 2.2e-42 175.6 116 70.7
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 1.8e-41 172.6 111 71.2
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 1.8e-41 172.6 111 71.2
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 1.8e-41 172.6 111 73.9
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 4.1e-41 171.4 116 67.2
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 6.9e-41 170.6 111 70.3
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 5.9e-40 167.5 140 61.4
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 1.0e-39 166.8 116 66.4
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 1.3e-39 166.4 126 62.7
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 1.7e-39 166.0 132 61.4
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 5.0e-39 164.5 111 68.5
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 1.1e-38 163.3 108 69.4
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 2.5e-38 162.2 108 69.4
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 2.5e-38 162.2 116 68.1
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 5.5e-38 161.0 111 67.6
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 7.2e-38 160.6 116 68.1
Lsat_1_v5_gn_7_13401 Lactuca sativa HOM05D005610 ORTHO05D006181 1.0e-36 156.8 102 69.6
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 2.3e-36 155.6 106 69.8
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 5.1e-36 154.5 96 74.0
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 3.3e-35 151.8 106 68.9
HPP92_003728 Vanilla planifolia HOM05D005610 ORTHO05D006181 9.7e-35 150.2 111 62.2
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 2.8e-34 148.7 107 66.4
CSS0025052 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 1.1e-33 146.7 86 77.9
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 1.8e-33 146.0 103 68.0
Os02g0189100 Oryza sativa ssp. japonica HOM05D005610 ORTHO05D006181 4.1e-33 144.8 109 63.3
Gohir.D06G159100 Gossypium hirsutum HOM05D005610 ORTHO05D006181 2.9e-31 138.7 86 70.9
FAN24G2055 Fragaria x ananassa HOM05D005610 ORTHO05D006181 7.2e-30 134.0 86 69.8
MBI19_g29445_MAGBIO Magnolia biondii HOM05D005610 ORTHO05D006181 7.2e-30 134.0 134 53.0
Pp3c10_18150 Physcomitrium patens HOM05D005610 ORTHO05D006181 3.6e-29 131.7 109 57.8
Psat6g005240 Pisum sativum HOM05D005610 ORTHO05D006181 3.6e-29 131.7 100 67.0
HanXRQChr15g0470051 Helianthus annuus HOM05D005610 ORTHO05D006181 8.0e-29 130.6 88 69.3
Dinv29757 Davidia involucrata HOM05D005610 ORTHO05D006181 1.8e-28 129.4 74 83.8
TAR626G0207 Trochodendron aralioides HOM05D005610 ORTHO05D006181 1.8e-28 129.4 179 44.1
Mapoly0014s0199 Marchantia polymorpha HOM05D005610 ORTHO05D006181 6.7e-28 127.5 109 55.0
SMO200G0153 Selaginella moellendorffii HOM05D005610 ORTHO05D006181 4.8e-26 121.3 106 50.9
BNapus_Darmor_BZH_scaffold_119p00050 Brassica napus HOM05D005610 ORTHO05D006181 1.4e-25 119.8 75 74.7
BNapus_Darmor_BZH_scaffold_97p00380 Brassica napus HOM05D005610 ORTHO05D006181 1.4e-25 119.8 75 74.7
FAN27G3428 Fragaria x ananassa HOM05D005610 ORTHO05D006181 5.9e-24 114.4 76 69.7
Actinidia02323 Actinidia chinensis HOM05D005610 ORTHO05D006181 7.7e-24 114.0 67 74.6
Zm00001eb004040 Zea mays HOM05D005610 ORTHO05D006181 1.9e-22 109.4 72 66.7
Thecc.10G135300 Theobroma cacao HOM05D005610 ORTHO05D006181 2.5e-22 109.0 70 71.4
Eucgr.K02585 Eucalyptus grandis HOM05D005610 ORTHO05D006181 1.8e-20 102.8 70 68.6
FAN20G1916 Fragaria x ananassa HOM05D005610 ORTHO05D006181 5.2e-20 101.3 59 78.0
CBR_g27782 Chara braunii HOM05D005610 ORTHO05D001468 6.8e-20 100.9 110 47.3
Pp3c3_34050 Physcomitrium patens HOM05D005610 ORTHO05D006181 2.6e-19 99.0 82 59.8
AagrBONN_evm.TU.Sc2ySwM_228.3334 Anthoceros agrestis HOM05D005610 ORTHO05D006181 4.4e-19 98.2 135 37.8
TPR.G7342 Trifolium pratense HOM05D005610 ORTHO05D006181 8.3e-18 94.0 54 77.8
Rhsim13G0147700 Rhododendron simsii HOM05D005610 ORTHO05D006181 1.6e-16 89.7 61 68.9
Sc16g0007910 Simmondsia chinensis HOM05D005610 ORTHO05D006181 1.0e-15 87.0 52 78.8
RcHm_v2.0_Chr7g0240711 Rosa chinensis HOM05D005610 ORTHO05D006181 3.6e-13 78.6 41 82.9
Migut.M01383 Erythranthe guttata HOM05D005610 ORTHO05D006181 1.4e-09 66.6 58 58.6
RcHm_v2.0_Chr7g0240721 Rosa chinensis HOM05D005610 ORTHO05D006181 1.4e-09 66.6 48 64.6
SEGI_27415 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 7.0e-09 64.3 60 50.0
CARHR125830 Cardamine hirsuta HOM05D005610 ORTHO05D006181 8.6e-07 57.4 38 68.4


User provided reference genes

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