Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 3.7e-111 404.8 196 100.0
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 4.3e-83 311.6 193 76.2
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 2.6e-80 302.4 194 75.8
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 3.5e-77 292.0 195 71.8
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 4.6e-77 291.6 195 71.3
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 1.5e-75 286.6 194 72.7
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 3.6e-74 282.0 195 69.2
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 4.7e-74 281.6 193 71.5
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 2.3e-73 279.3 194 68.0
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 5.2e-73 278.1 195 68.7
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 5.2e-73 278.1 192 68.8
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 6.8e-73 277.7 194 67.5
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 1.5e-72 276.6 190 69.5
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 3.7e-71 271.9 192 65.6
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 2.4e-70 269.2 195 66.2
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 5.4e-70 268.1 192 66.1
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 7.0e-70 267.7 196 61.7
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 7.0e-70 267.7 193 66.8
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 7.0e-70 267.7 195 64.6
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 7.0e-70 267.7 192 66.7
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 1.2e-69 266.9 183 68.3
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 2.1e-69 266.2 189 66.1
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 2.1e-69 266.2 188 68.1
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 7.8e-69 264.2 195 65.6
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 1.7e-68 263.1 192 65.6
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 3.0e-68 262.3 185 69.2
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 5.0e-68 261.5 189 67.7
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 6.6e-68 261.2 187 67.4
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 1.1e-67 260.4 185 68.6
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 1.9e-67 259.6 191 66.0
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 2.5e-67 259.2 201 62.7
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 2.5e-67 259.2 189 65.1
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 2.5e-67 259.2 191 63.4
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 3.3e-67 258.8 196 65.3
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 5.6e-67 258.1 188 66.0
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 9.5e-67 257.3 187 66.3
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 1.2e-66 256.9 190 65.8
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 1.6e-66 256.5 190 66.8
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 2.1e-66 256.1 186 65.1
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 2.1e-66 256.1 190 65.8
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 2.8e-66 255.8 186 65.1
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 4.7e-66 255.0 189 64.6
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 6.2e-66 254.6 187 64.7
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 8.1e-66 254.2 192 64.1
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 1.1e-65 253.8 186 66.1
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 1.4e-65 253.4 191 65.4
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 1.8e-65 253.1 201 62.7
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 3.1e-65 252.3 191 64.9
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 5.2e-65 251.5 191 64.9
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 5.2e-65 251.5 191 64.9
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 6.8e-65 251.1 197 62.4
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 1.2e-64 250.4 182 66.5
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 1.5e-64 250.0 196 62.8
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 1.5e-64 250.0 191 64.4
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 2.6e-64 249.2 191 63.9
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 7.5e-64 247.7 196 60.7
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 7.5e-64 247.7 190 61.6
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 2.9e-63 245.7 195 61.5
Aa31LG11G2680 Aethionema arabicum HOM05D006499 ORTHO05D007874 3.7e-63 245.4 190 62.6
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 3.7e-63 245.4 198 60.6
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 4.9e-63 245.0 191 63.9
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 4.9e-63 245.0 189 62.4
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 8.3e-63 244.2 195 60.5
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 8.3e-63 244.2 191 62.8
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 8.3e-63 244.2 177 67.2
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 1.4e-62 243.4 188 61.7
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 1.4e-62 243.4 188 61.7
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 1.9e-62 243.0 188 62.8
Thecc.02G158700 Theobroma cacao HOM05D006499 ORTHO05D007874 1.9e-62 243.0 184 63.6
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 3.2e-62 242.3 191 62.8
FAN12G4256 Fragaria x ananassa HOM05D006499 ORTHO05D007874 3.2e-62 242.3 185 65.9
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 3.2e-62 242.3 167 67.7
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 5.4e-62 241.5 185 63.2
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 5.4e-62 241.5 191 62.3
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 1.2e-61 240.4 167 67.1
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 1.2e-61 240.4 182 63.2
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 1.6e-61 240.0 188 61.2
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 6.0e-61 238.0 192 59.9
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 2.3e-60 236.1 177 65.0
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 3.3e-59 232.3 185 62.2
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 2.8e-58 229.2 186 60.8
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 2.8e-58 229.2 195 58.5
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 1.1e-57 227.3 198 57.1
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 1.4e-57 226.9 187 59.4
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 3.1e-57 225.7 177 61.0
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.3e-55 220.3 188 56.4
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 1.1e-54 217.2 178 59.6
COL.COLO4_06169 Corchorus olitorius HOM05D006499 ORTHO05D007874 1.3e-52 210.3 164 64.0
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 1.9e-51 206.5 186 54.3
Sc06g0006830 Simmondsia chinensis HOM05D006499 ORTHO05D007874 2.6e-48 196.1 146 62.3
Mapoly0180s0008 Marchantia polymorpha HOM05D006499 ORTHO05D007874 7.6e-48 194.5 182 55.5
GSVIVG01026240001 Vitis vinifera HOM05D006499 ORTHO05D007874 7.8e-45 184.5 185 50.8
TAR622G0494 Trochodendron aralioides HOM05D006499 ORTHO05D007874 2.3e-44 183.0 148 58.1
CBR_g16977 Chara braunii HOM05D006499 ORTHO05D007874 1.9e-43 179.9 203 45.8
SHI02178 Sapria himalayana HOM05D006499 ORTHO05D007874 5.3e-41 171.8 184 49.5
CAN.G655.2 Capsicum annuum HOM05D006499 ORTHO05D007874 4.3e-35 152.1 111 59.5
SEGI_40434 Sequoiadendron giganteum HOM05D006499 ORTHO05D007874 7.6e-32 141.4 109 64.2
CAN.G2.1 Capsicum annuum HOM05D006499 ORTHO05D007874 1.3e-31 140.6 109 68.8
QL04p029592 Quercus lobata HOM05D006499 ORTHO05D007874 1.4e-30 137.1 84 79.8
QL05p044270 Quercus lobata HOM05D000125 ORTHO05D007874 7.4e-27 124.8 75 81.3
arahy.Tifrunner.gnm1.ann1.YHJY2A Arachis hypogaea HOM05D006499 ORTHO05D007874 4.9e-23 112.1 80 68.8
Medtr1g037850 Medicago truncatula HOM05D006499 ORTHO05D007874 3.9e-20 102.4 92 54.3
A03p62810 Brassica napus HOM05D006499 ORTHO05D007874 2.8e-18 96.3 78 59.0
BraA03t15356Z Brassica rapa HOM05D006499 ORTHO05D007874 2.8e-18 96.3 78 59.0
BcaC03g13135 Brassica carinata HOM05D006499 ORTHO05D007874 6.3e-18 95.1 73 60.3
PGR044G1944 Punica granatum HOM05D006499 ORTHO05D007874 6.3e-18 95.1 158 41.8
Nn5g28518 Nelumbo nucifera HOM05D006499 ORTHO05D007874 8.2e-18 94.7 92 50.0
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 1.5e-11 73.9 170 30.0
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 2.0e-11 73.6 171 28.1
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 2.0e-11 73.6 172 29.1
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 4.3e-11 72.4 188 29.8
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 1.7e-10 70.5 170 30.0
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 2.8e-10 69.7 172 29.7
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 3.7e-10 69.3 187 26.7
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 3.7e-10 69.3 159 28.9
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 4.8e-10 68.9 165 29.1
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 8.2e-10 68.2 151 29.8
Cfa021425 Carpinus fangiana HOM05D006499 ORTHO05D007874 1.1e-09 67.8 177 31.1
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 1.1e-09 67.8 171 29.2
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 1.4e-09 67.4 166 27.7
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 1.4e-09 67.4 166 28.3
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 3.1e-09 66.2 166 30.1
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 3.1e-09 66.2 168 28.6
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 5.3e-09 65.5 181 29.8
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 9.1e-09 64.7 170 28.8
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 1.2e-08 64.3 170 30.0
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 1.2e-08 64.3 164 27.4
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 1.5e-08 63.9 169 28.4
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 2.0e-08 63.5 166 30.7
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 2.6e-08 63.2 171 29.8
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 3.4e-08 62.8 167 28.7
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 3.4e-08 62.8 167 28.7
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 3.4e-08 62.8 167 28.7
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 3.4e-08 62.8 165 29.1
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 5.9e-08 62.0 175 28.6
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 7.7e-08 61.6 169 27.8
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 7.7e-08 61.6 160 29.4
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 7.7e-08 61.6 169 28.4
Nn6g33750 Nelumbo nucifera HOM05D006499 ORTHO05D007874 1.0e-07 61.2 49 53.1
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 1.0e-07 61.2 166 27.7
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 1.3e-07 60.8 173 28.9
Pp3s30_680 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.7e-07 60.5 177 27.7
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 2.9e-07 59.7 173 25.4
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 5.0e-07 58.9 179 27.9
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 6.5e-07 58.5 172 26.7
Pp3s30_567 Physcomitrium patens HOM05D006499 ORTHO05D007874 6.5e-07 58.5 177 27.1


User provided reference genes

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