Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold49G18402 Striga asiatica HOM05D005333 ORTHO05D005776 2.3e-57 225.3 110 100.0
SGA_v2.0_scaffold3596G54365 Striga asiatica HOM05D005333 ORTHO05D005776 2.8e-52 208.4 100 100.0
SGA_v2.0_scaffold109G31056 Striga asiatica HOM05D005333 ORTHO05D005776 4.9e-52 207.6 110 94.5
MSTRG.12252 Avicennia marina HOM05D005333 ORTHO05D005776 2.6e-37 158.7 108 71.3
Migut.H01282 Erythranthe guttata HOM05D005333 ORTHO05D005776 2.6e-37 158.7 105 75.2
Oeu044201.1 Olea europaea HOM05D005333 ORTHO05D005776 7.3e-32 140.6 110 64.5
CANSAT11G0814 Cannabis sativa HOM05D005333 ORTHO05D005776 3.7e-28 128.3 107 62.6
Cc06_g08400 Coffea canephora HOM05D005333 ORTHO05D005776 6.4e-28 127.5 110 61.8
Nitab4.5_0006661g0010 Nicotiana tabacum HOM05D005333 ORTHO05D005776 8.3e-28 127.1 104 65.4
Nitab4.5_0000028g0370 Nicotiana tabacum HOM05D005333 ORTHO05D005776 5.4e-27 124.4 104 65.4
Peaxi162Scf00046g00622 Petunia axillaris HOM05D005333 ORTHO05D005776 5.4e-27 124.4 110 59.1
Dinv36517 Davidia involucrata HOM05D005333 ORTHO05D005776 2.3e-25 119.0 110 58.2
AL6G31740 Arabidopsis lyrata HOM05D005333 ORTHO05D005776 5.1e-25 117.9 107 57.0
Hma1.2p1_0018F.1_g012330 Hydrangea macrophylla HOM05D005333 ORTHO05D005776 8.6e-25 117.1 108 56.5
unitig_748.g8609 Utricularia gibba HOM05D005333 ORTHO05D005776 1.5e-24 116.3 105 54.3
vmacro20565 Vaccinium macrocarpon HOM05D005333 ORTHO05D005776 1.9e-24 115.9 110 59.1
Solyc07g008270.3 Solanum lycopersicum HOM05D005333 ORTHO05D005776 2.5e-24 115.5 103 61.2
Sopen07g004160 Solanum pennellii HOM05D005333 ORTHO05D005776 2.5e-24 115.5 103 61.2
Carub.0006s1858 Capsella rubella HOM05D005333 ORTHO05D005776 5.6e-24 114.4 107 55.1
Cfa003386 Carpinus fangiana HOM05D005333 ORTHO05D005776 5.6e-24 114.4 109 57.8
DCAR_014887 Daucus carota HOM05D005333 ORTHO05D005776 5.6e-24 114.4 107 59.8
PGSC0003DMG400019893 Solanum tuberosum HOM05D005333 ORTHO05D005776 5.6e-24 114.4 103 60.2
Prupe.7G066500 Prunus persica HOM05D005333 ORTHO05D005776 7.3e-24 114.0 111 54.1
Prupe.7G244000 Prunus persica HOM05D005333 ORTHO05D005776 9.5e-24 113.6 111 54.1
TWI34G1084 Tripterygium wilfordii HOM05D005333 ORTHO05D005776 1.2e-23 113.2 107 57.9
AT5G20180 Arabidopsis thaliana HOM05D005333 ORTHO05D005776 1.6e-23 112.8 107 55.1
Rhsim03G0248400 Rhododendron simsii HOM05D005333 ORTHO05D005776 1.6e-23 112.8 110 58.2
CiPaw.03G244900 Carya illinoinensis HOM05D005333 ORTHO05D005776 2.1e-23 112.5 107 55.1
RcHm_v2.0_Chr2g0088271 Rosa chinensis HOM05D005333 ORTHO05D005776 2.1e-23 112.5 109 55.0
DCAR_020918 Daucus carota HOM05D005333 ORTHO05D005776 8.1e-23 110.5 110 56.4
FvH4_1g03150 Fragaria vesca HOM05D005333 ORTHO05D005776 1.1e-22 110.2 107 57.0
FAN19G1630 Fragaria x ananassa HOM05D005333 ORTHO05D005776 1.1e-22 110.2 107 57.0
FAN26G1318 Fragaria x ananassa HOM05D005333 ORTHO05D005776 1.8e-22 109.4 106 56.6
Sp6g24220 Schrenkiella parvula HOM05D005333 ORTHO05D005776 1.8e-22 109.4 107 51.4
Thhalv10015097m.g Eutrema salsugineum HOM05D005333 ORTHO05D005776 2.4e-22 109.0 107 52.3
THA.LOC104799642 Tarenaya hassleriana HOM05D005333 ORTHO05D005776 2.4e-22 109.0 108 51.9
FAN23G1698 Fragaria x ananassa HOM05D005333 ORTHO05D005776 6.8e-22 107.5 126 50.8
Duzib187G1708 Durio zibethinus HOM05D005333 ORTHO05D005776 1.2e-21 106.7 107 52.3
GSVIVG01015545001 Vitis vinifera HOM05D005333 ORTHO05D005776 1.2e-21 106.7 105 55.2
Actinidia40477 Actinidia chinensis HOM05D001011 ORTHO05D000851 1.5e-21 106.3 86 64.0
C03p11490 Brassica napus HOM05D005333 ORTHO05D005776 2.0e-21 105.9 107 51.4
BolC3t13621H Brassica oleracea HOM05D005333 ORTHO05D005776 2.6e-21 105.5 107 52.3
BraA03t10304Z Brassica rapa HOM05D005333 ORTHO05D005776 2.6e-21 105.5 107 52.3
Ciclev10010005m.g Citrus clementina HOM05D005333 ORTHO05D005776 2.6e-21 105.5 107 51.4
Haze_25566 Corylus avellana HOM05D005333 ORTHO05D005776 2.6e-21 105.5 99 56.6
FAN28G2446 Fragaria x ananassa HOM05D000315 ORTHO05D001379 2.6e-21 105.5 106 54.7
Dinv41504 Davidia involucrata HOM05D005333 ORTHO05D005776 3.4e-21 105.1 93 60.2
QL02p088661 Quercus lobata HOM05D005333 ORTHO05D005776 3.4e-21 105.1 105 55.2
Atru.chr1.953 Acer truncatum HOM05D005333 ORTHO05D005776 4.4e-21 104.8 105 53.3
Thecc.09G127500 Theobroma cacao HOM05D005333 ORTHO05D005776 5.8e-21 104.4 107 50.5
Gohir.A06G055500 Gossypium hirsutum HOM05D005333 ORTHO05D005776 7.6e-21 104.0 107 52.3
Gorai.010G063500 Gossypium raimondii HOM05D005333 ORTHO05D005776 7.6e-21 104.0 107 52.3
Nn2g12046 Nelumbo nucifera HOM05D005333 ORTHO05D005776 9.9e-21 103.6 108 52.8
arahy.Tifrunner.gnm1.ann1.83L7WY Arachis hypogaea HOM05D005333 ORTHO05D005776 1.3e-20 103.2 100 54.0
A03p09910 Brassica napus HOM05D005333 ORTHO05D005776 1.3e-20 103.2 107 51.4
Sed0012264 Sechium edule HOM05D005333 ORTHO05D005776 1.3e-20 103.2 102 56.9
arahy.Tifrunner.gnm1.ann1.U3NP9C Arachis hypogaea HOM05D005333 ORTHO05D005776 2.2e-20 102.4 100 53.0
CsaV3_1G030220 Cucumis sativus L. HOM05D005333 ORTHO05D005776 2.2e-20 102.4 105 52.4
MBI01_g45309_MAGBIO Magnolia biondii HOM05D005333 ORTHO05D005776 2.2e-20 102.4 81 65.4
MBI01_g15682_MAGBIO Magnolia biondii HOM05D005333 ORTHO05D005776 2.9e-20 102.1 51 90.2
Cpa.g.sc46.7 Carica papaya HOM05D005333 ORTHO05D005776 4.9e-20 101.3 105 53.3
ClCG06G011210 Citrullus lanatus HOM05D005333 ORTHO05D005776 4.9e-20 101.3 105 53.3
Gohir.D06G054400 Gossypium hirsutum HOM05D005333 ORTHO05D005776 4.9e-20 101.3 107 51.4
MD15G1172100 Malus domestica HOM05D005333 ORTHO05D005776 4.9e-20 101.3 107 52.3
Medtr4g114610 Medicago truncatula HOM05D005333 ORTHO05D005776 4.9e-20 101.3 102 49.0
Lalb_Chr12g0197971 Lupinus albus HOM05D005333 ORTHO05D005776 6.4e-20 100.9 102 54.9
Duzib168G0900 Durio zibethinus HOM05D005333 ORTHO05D005776 1.1e-19 100.1 107 51.4
Potri.018G131000 Populus trichocarpa HOM05D005333 ORTHO05D005776 1.4e-19 99.8 113 50.4
CARHR192640 Cardamine hirsuta HOM05D005333 ORTHO05D005776 1.9e-19 99.4 109 52.3
Psat4g038680 Pisum sativum HOM05D005333 ORTHO05D005776 2.4e-19 99.0 104 51.9
SalBow6G5031 Salvia bowleyana HOM05D005333 ORTHO05D005776 2.4e-19 99.0 52 86.5
Eucgr.C01196 Eucalyptus grandis HOM05D005333 ORTHO05D005776 3.2e-19 98.6 108 50.9
Hma1.2p1_0931F.1_g238060 Hydrangea macrophylla HOM05D005333 ORTHO05D005776 3.2e-19 98.6 80 63.8
MELO3C010337.2 Cucumis melo HOM05D005333 ORTHO05D005776 7.1e-19 97.4 86 58.1
Manes.14G133000 Manihot esculenta HOM05D005333 ORTHO05D005776 1.6e-18 96.3 105 50.5
Lj4g0022056 Lotus japonicus HOM05D005333 ORTHO05D005776 2.1e-18 95.9 105 51.4
Hund09250 Selenicereus undatus HOM05D005333 ORTHO05D005776 2.1e-18 95.9 105 52.4
Nn2g12039 Nelumbo nucifera HOM05D005333 ORTHO05D005776 2.7e-18 95.5 54 81.5
Aa31LG1G14430 Aethionema arabicum HOM05D005333 ORTHO05D005776 3.5e-18 95.1 59 72.9
Eucgr.C01530 Eucalyptus grandis HOM05D005333 ORTHO05D005776 3.5e-18 95.1 106 50.0
MD02G1030500 Malus domestica HOM05D005333 ORTHO05D005776 3.5e-18 95.1 104 50.0
Rhsim01G0068900 Rhododendron simsii HOM05D005333 ORTHO05D005776 6.0e-18 94.4 109 51.4
CDE10G0227 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 1.0e-17 93.6 86 58.1
TPR.G26498 Trifolium pratense HOM05D005333 ORTHO05D005776 1.0e-17 93.6 104 48.1
Aqoxy7G03689 Aquilegia oxysepala HOM05D005333 ORTHO05D005776 1.3e-17 93.2 85 57.6
Lj4g0001981 Lotus japonicus HOM05D005333 ORTHO05D005776 1.3e-17 93.2 105 51.4
PGR102G2059 Punica granatum HOM05D005333 ORTHO05D005776 1.3e-17 93.2 106 47.2
COL.COLO4_35113 Corchorus olitorius HOM05D005333 ORTHO05D005776 2.3e-17 92.4 50 82.0
Sc08g0006540 Simmondsia chinensis HOM05D005333 ORTHO05D005776 3.9e-17 91.7 46 89.1
AUR62013349 Chenopodium quinoa HOM05D005333 ORTHO05D005776 5.1e-17 91.3 82 58.5
CDE04G2910 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 6.6e-17 90.9 86 54.7
Lalb_Chr07g0179001 Lupinus albus HOM05D005333 ORTHO05D005776 6.6e-17 90.9 45 95.6
Potri.006G069000 Populus trichocarpa HOM05D005333 ORTHO05D005776 6.6e-17 90.9 107 46.7
ECA246G0448 Erigeron canadensis HOM05D005333 ORTHO05D005776 8.7e-17 90.5 102 49.0
Glyma.17G114100 Glycine max HOM05D005333 ORTHO05D005776 1.1e-16 90.1 102 50.0
EL10Ac8g18671 Beta vulgaris HOM05D005333 ORTHO05D005776 1.5e-16 89.7 109 45.9
Lsat_1_v5_gn_5_31321 Lactuca sativa HOM05D005333 ORTHO05D005776 1.9e-16 89.4 109 52.3
VMungo1215G0455 Vigna mungo HOM05D005333 ORTHO05D005776 1.9e-16 89.4 102 48.0
BcaC03g13741 Brassica carinata HOM05D005333 ORTHO05D005776 2.5e-16 89.0 107 43.9
BolC2t07023H Brassica oleracea HOM05D005333 ORTHO05D005776 2.5e-16 89.0 107 43.9
BraA02t05559Z Brassica rapa HOM05D005333 ORTHO05D005776 3.3e-16 88.6 107 43.9
AUR62011139 Chenopodium quinoa HOM05D005333 ORTHO05D005776 5.6e-16 87.8 82 57.3
Glyma.13G166400 Glycine max HOM05D005333 ORTHO05D005776 7.3e-16 87.4 102 50.0
CDE10G0631 Ceratophyllum demersum HOM05D005333 ORTHO05D005776 9.6e-16 87.0 86 57.0
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 9.6e-16 87.0 48 79.2
Phvul.003G165300 Phaseolus vulgaris HOM05D005333 ORTHO05D005776 1.6e-15 86.3 98 49.0
BNapus_Darmor_BZH_scaffold_38p01760 Brassica napus HOM05D005333 ORTHO05D005776 2.1e-15 85.9 107 41.1
Atru.chr7.1705 Acer truncatum HOM05D006080 ORTHO05D007382 2.8e-15 85.5 106 44.3
BcaB05g22866 Brassica carinata HOM05D005333 ORTHO05D005776 3.6e-15 85.1 105 42.9
A02p06080 Brassica napus HOM05D005333 ORTHO05D005776 1.4e-14 83.2 107 41.1
Ciclev10010320m.g Citrus clementina HOM05D005333 ORTHO05D005776 1.4e-14 83.2 107 40.2
HanXRQChr06g0182851 Helianthus annuus HOM05D005333 ORTHO05D005776 3.1e-14 82.0 93 44.1
Pp3c15_5230 Physcomitrium patens HOM05D005333 ORTHO05D005776 4.9e-12 74.7 50 62.0
AagrBONN_evm.TU.Sc2ySwM_344.103 Anthoceros agrestis HOM05D005333 ORTHO05D005776 1.4e-11 73.2 73 54.8
AagrBONN_evm.TU.Sc2ySwM_344.112 Anthoceros agrestis HOM05D005333 ORTHO05D005776 3.2e-11 72.0 43 76.7
Mapoly0008s0076 Marchantia polymorpha HOM05D005333 ORTHO05D005776 3.2e-11 72.0 44 68.2
AL5G13030 Arabidopsis lyrata HOM05D005333 ORTHO05D005776 7.1e-11 70.9 53 62.3
CBR_g19308 Chara braunii HOM05D005333 ORTHO05D005776 7.8e-10 67.4 41 73.2
Zm00001eb212180 Zea mays HOM05D005333 ORTHO05D005776 7.8e-10 67.4 43 69.8
PRCOL_00005826 Prasinoderma coloniale HOM05D005333 ORTHO05D005776 1.3e-09 66.6 47 57.4
Zm00001eb103590 Zea mays HOM05D001170 ORTHO05D006602 2.3e-09 65.9 43 67.4
Os03g0811800 Oryza sativa ssp. japonica HOM05D005333 ORTHO05D005776 6.6e-09 64.3 43 65.1
SMO116G0310 Selaginella moellendorffii HOM05D005333 ORTHO05D005776 3.3e-08 62.0 43 65.1
ATR0618G145 Amborella trichopoda HOM05D005333 ORTHO05D005776 4.3e-08 61.6 45 64.4
Actinidia21980 Actinidia chinensis HOM05D001011 ORTHO05D005776 9.6e-08 60.5 79 45.6
Zm00001eb091680 Zea mays HOM05D001170 ORTHO05D006602 1.3e-07 60.1 43 65.1
Zm00001eb091690 Zea mays HOM05D001170 ORTHO05D006602 1.3e-07 60.1 43 65.1
Sabra18G0111200 Salix brachista HOM05D002758 ORTHO05D005776 2.1e-07 59.3 107 36.4
SMO197G0073 Selaginella moellendorffii HOM05D005333 ORTHO05D005776 2.8e-07 58.9 43 60.5
SGA_v2.0_scaffold80G25793 Striga asiatica HOM05D005333 ORTHO05D005776 6.2e-07 57.8 75 50.7
ATCG00760 Arabidopsis thaliana HOM05D005333 ORTHO05D005776 8.1e-07 57.4 38 63.2
BolC7t41709H Brassica oleracea HOM05D005333 ORTHO05D005776 8.1e-07 57.4 38 63.2
BolSC29t60528H Brassica oleracea HOM05D005333 ORTHO05D005776 8.1e-07 57.4 38 63.2
BolSC29t60609H Brassica oleracea HOM05D005333 ORTHO05D005776 8.1e-07 57.4 38 63.2
BolSC35t60669H Brassica oleracea HOM05D005333 ORTHO05D005776 8.1e-07 57.4 38 63.2
BolSC35t60730H Brassica oleracea HOM05D005333 ORTHO05D005776 8.1e-07 57.4 38 63.2
BraA06t25383Z Brassica rapa HOM05D005333 ORTHO05D005776 8.1e-07 57.4 38 63.2
BraSC103t45446Z Brassica rapa HOM05D005333 ORTHO05D005776 8.1e-07 57.4 38 63.2
BraSC138t45554Z Brassica rapa HOM05D005333 ORTHO05D005776 8.1e-07 57.4 38 63.2
BraSC143t45636Z Brassica rapa HOM05D005333 ORTHO05D005776 8.1e-07 57.4 38 63.2
BraSC58t46440Z Brassica rapa HOM05D005333 ORTHO05D005776 8.1e-07 57.4 38 63.2
BraSC58t46501Z Brassica rapa HOM05D005333 ORTHO05D005776 8.1e-07 57.4 38 63.2
BraSC59t46571Z Brassica rapa HOM05D005333 ORTHO05D005776 8.1e-07 57.4 38 63.2
DCAR_032519 Daucus carota HOM05D005333 ORTHO05D005776 8.1e-07 57.4 38 63.2
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 8.1e-07 57.4 38 63.2
PSO548G0025 Papaver somniferum HOM05D005333 ORTHO05D005776 8.1e-07 57.4 38 63.2
PGR111G0044 Punica granatum HOM05D005333 ORTHO05D005776 8.1e-07 57.4 38 63.2
CARHR282240 Cardamine hirsuta HOM05D000964 ORTHO05D003870 1.4e-06 56.6 39 61.5
Gorai.009G350300 Gossypium raimondii HOM05D005333 ORTHO05D005776 1.8e-06 56.2 38 63.2
COL.COLO4_00391 Corchorus olitorius HOM05D006856 ORTHO05D008513 3.1e-06 55.5 38 63.2
Solyc12g035850.1 Solanum lycopersicum HOM05D000216 ORTHO05D004083 4.0e-06 55.1 38 63.2


User provided reference genes

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