Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 8.4e-123 443.7 229 100.0
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 3.1e-77 292.4 192 80.2
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 4.4e-71 271.9 193 73.6
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 6.3e-70 268.1 192 72.9
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 8.2e-70 267.7 193 74.1
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 5.5e-66 255.0 195 69.7
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 6.1e-65 251.5 192 69.3
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 1.0e-64 250.8 195 66.2
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 1.4e-64 250.4 196 67.3
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 3.0e-64 249.2 195 65.6
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.2e-63 247.3 197 66.5
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 3.4e-63 245.7 197 66.5
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 4.4e-63 245.4 196 65.8
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 5.7e-63 245.0 197 66.5
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 7.5e-63 244.6 195 66.2
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 1.3e-62 243.8 192 66.1
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 1.3e-62 243.8 192 66.1
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 1.7e-62 243.4 191 66.5
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 2.2e-62 243.0 195 67.2
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 2.8e-62 242.7 192 65.6
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 3.7e-62 242.3 192 66.7
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 3.7e-62 242.3 197 67.5
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 6.3e-62 241.5 216 60.6
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 8.3e-62 241.1 195 66.2
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 1.1e-61 240.7 196 67.9
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 1.1e-61 240.7 202 64.4
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 1.4e-61 240.4 197 67.0
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 4.1e-61 238.8 206 63.1
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 1.2e-60 237.3 197 65.5
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 1.2e-60 237.3 204 62.7
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 1.6e-60 236.9 206 63.6
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 2.7e-60 236.1 196 64.3
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 3.5e-60 235.7 197 65.0
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 5.9e-60 235.0 197 66.0
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 7.7e-60 234.6 197 65.0
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 1.0e-59 234.2 196 64.3
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 1.3e-59 233.8 192 66.7
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 1.3e-59 233.8 197 64.0
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 1.7e-59 233.4 194 66.0
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.2e-59 233.0 197 61.9
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 2.9e-59 232.6 196 64.3
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 3.8e-59 232.3 200 60.5
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 6.5e-59 231.5 203 61.6
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 1.5e-58 230.3 195 63.1
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 1.5e-58 230.3 197 62.9
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 1.5e-58 230.3 198 63.1
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 4.2e-58 228.8 206 62.1
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 2.1e-57 226.5 199 62.3
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 2.1e-57 226.5 183 64.5
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 2.7e-57 226.1 197 64.0
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 2.7e-57 226.1 189 65.6
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 2.7e-57 226.1 189 66.1
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 8.0e-57 224.6 176 67.6
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 1.4e-56 223.8 206 61.2
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 1.4e-56 223.8 216 59.3
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 2.3e-56 223.0 206 60.7
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 2.3e-56 223.0 190 64.2
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 4.0e-56 222.2 199 61.3
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 5.2e-56 221.9 194 61.3
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 8.8e-56 221.1 195 61.0
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 1.2e-55 220.7 198 58.1
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.5e-55 220.3 197 58.9
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 2.0e-55 219.9 202 59.9
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 2.6e-55 219.5 202 58.9
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 4.4e-55 218.8 182 61.5
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 4.4e-55 218.8 208 61.1
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 1.7e-54 216.9 196 60.7
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 2.8e-54 216.1 198 60.1
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 2.8e-54 216.1 197 58.4
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 3.7e-54 215.7 191 61.8
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 3.7e-54 215.7 199 58.8
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 4.8e-54 215.3 188 61.2
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 4.8e-54 215.3 189 60.3
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 4.8e-54 215.3 195 61.5
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 8.3e-54 214.5 218 56.9
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 8.3e-54 214.5 202 57.9
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 1.1e-53 214.2 295 46.1
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 1.4e-53 213.8 200 60.5
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 1.4e-53 213.8 209 59.8
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 1.8e-53 213.4 199 56.8
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 1.8e-53 213.4 195 57.4
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 5.4e-53 211.8 193 62.2
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 5.4e-53 211.8 193 62.2
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 2.0e-52 209.9 194 57.2
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 2.7e-52 209.5 195 60.5
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 3.5e-52 209.1 200 56.5
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 2.9e-51 206.1 187 58.3
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 3.8e-51 205.7 156 69.9
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 3.8e-51 205.7 189 57.7
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 9.5e-50 201.1 195 55.4
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 1.2e-49 200.7 192 58.3
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 1.2e-49 200.7 191 55.0
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 2.8e-49 199.5 250 48.4
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 1.8e-48 196.8 187 56.1
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 3.4e-47 192.6 195 56.4
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 4.4e-47 192.2 186 56.5
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 7.5e-47 191.4 195 54.4
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 7.5e-47 191.4 190 57.9
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 9.8e-47 191.0 192 56.2
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 1.1e-45 187.6 190 54.7
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 1.4e-45 187.2 193 57.0
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 1.8e-45 186.8 152 62.5
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 2.4e-45 186.4 228 49.1
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 7.0e-45 184.9 193 55.4
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 7.0e-45 184.9 192 53.6
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 1.6e-44 183.7 192 55.2
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 1.6e-44 183.7 195 52.3
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 3.5e-44 182.6 192 54.7
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 3.5e-44 182.6 192 54.7
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 3.5e-44 182.6 196 53.6
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 3.5e-44 182.6 198 52.5
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 4.5e-44 182.2 193 53.9
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 1.0e-43 181.0 192 54.2
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 1.7e-43 180.3 194 53.6
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 2.3e-43 179.9 186 56.5
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 4.3e-42 175.6 177 54.2
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 9.5e-42 174.5 193 52.8
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 4.7e-41 172.2 181 56.4
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 2.3e-40 169.9 189 53.4
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 7.5e-39 164.9 124 63.7
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 2.9e-38 162.9 195 46.7
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 1.4e-37 160.6 199 47.7
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 3.2e-37 159.5 175 52.0
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 3.2e-37 159.5 192 49.0
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 9.2e-37 157.9 182 48.4
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 2.0e-36 156.8 194 45.4
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 3.5e-36 156.0 176 50.6
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 4.3e-34 149.1 162 50.0
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 4.7e-33 145.6 188 47.3
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 1.2e-31 141.0 125 57.6
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 5.1e-27 125.6 124 52.4
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 6.6e-27 125.2 145 44.1
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 2.8e-25 119.8 99 67.7
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 1.8e-24 117.1 101 59.4
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 2.3e-24 116.7 97 67.0
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 4.0e-24 115.9 99 58.6
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 7.6e-23 111.7 100 56.0
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 2.7e-20 103.2 116 51.7
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 3.5e-20 102.8 116 50.0
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 1.3e-19 100.9 98 61.2
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 2.3e-19 100.1 133 44.4
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 2.3e-19 100.1 146 45.9
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 1.1e-18 97.8 158 39.2
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 1.9e-18 97.1 100 58.0
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 2.5e-18 96.7 155 39.4
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 1.8e-16 90.5 100 54.0
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 9.9e-15 84.7 127 40.2
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 4.9e-14 82.4 114 44.7
BcaB05g22696 Brassica carinata HOM05D004696 ORTHO05D005645 4.6e-12 75.9 117 41.0
QL04p080373 Quercus lobata HOM05D000023 ORTHO05D000014 6.6e-11 72.0 45 73.3
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 8.7e-11 71.6 164 34.1
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 5.6e-10 68.9 54 68.5
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 1.6e-09 67.4 57 61.4
QL12p004065 Quercus lobata HOM05D004696 ORTHO05D005645 6.2e-09 65.5 63 60.3
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 6.9e-08 62.0 65 52.3
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 2.9e-06 56.6 100 37.0
Medtr7g074130 Medicago truncatula HOM05D004696 ORTHO05D005645 4.9e-06 55.8 58 53.4


User provided reference genes

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