Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 2.9e-140 501.9 256 100.0
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 9.2e-78 294.3 256 64.5
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 6.2e-66 255.0 250 58.8
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 7.5e-64 248.1 252 57.1
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 1.5e-59 233.8 250 54.4
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 9.2e-54 214.5 252 51.6
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 4.6e-45 185.7 247 45.3
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 6.6e-44 181.8 249 45.4
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 3.3e-43 179.5 264 41.7
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.6e-42 177.2 253 43.9
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 2.4e-41 173.3 254 42.9
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 2.6e-40 169.9 252 43.7
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 7.6e-40 168.3 252 42.5
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 9.9e-40 167.9 251 42.2
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 5.4e-38 162.2 248 41.9
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.6e-37 160.6 251 41.8
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 1.6e-37 160.6 258 40.3
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 2.7e-37 159.8 258 40.7
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 8.7e-36 154.8 249 40.2
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 4.3e-35 152.5 249 39.8
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 2.1e-34 150.2 253 38.3
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 3.7e-34 149.4 263 38.8
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 6.2e-34 148.7 265 39.2
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 1.4e-33 147.5 254 36.6
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 1.4e-33 147.5 248 39.1
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 4.0e-33 146.0 261 37.9
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 1.2e-32 144.4 249 37.8
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 2.0e-32 143.7 249 39.8
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 2.6e-32 143.3 254 37.4
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 4.5e-32 142.5 254 38.2
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 7.6e-32 141.7 250 37.2
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 1.7e-31 140.6 279 36.6
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 2.9e-31 139.8 250 36.0
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 3.8e-31 139.4 259 36.7
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 4.9e-31 139.0 253 38.3
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 1.4e-30 137.5 277 35.4
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 1.9e-30 137.1 260 35.4
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 2.5e-30 136.7 254 35.8
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 2.5e-30 136.7 254 35.8
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 2.5e-30 136.7 249 35.3
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 2.5e-30 136.7 257 36.2
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 2.5e-30 136.7 254 36.2
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 3.2e-30 136.3 262 36.6
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 3.2e-30 136.3 250 37.2
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 3.2e-30 136.3 255 37.3
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 4.2e-30 136.0 252 37.7
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 9.3e-30 134.8 264 35.6
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 9.3e-30 134.8 264 36.0
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 1.6e-29 134.0 282 34.0
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 4.6e-29 132.5 254 37.4
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 6.0e-29 132.1 253 36.0
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 1.0e-28 131.3 228 36.8
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 1.3e-28 131.0 240 35.4
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 6.7e-28 128.6 248 37.1
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 6.7e-28 128.6 252 36.5
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 1.5e-27 127.5 246 37.0
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 3.7e-26 122.9 248 36.7
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 8.2e-26 121.7 256 36.7
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 1.1e-25 121.3 191 38.2
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 1.8e-25 120.6 250 34.8
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 1.8e-25 120.6 222 32.9
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 1.2e-24 117.9 250 34.4
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 4.5e-24 115.9 250 33.6
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 5.8e-24 115.5 260 33.8
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 1.0e-23 114.8 246 35.4
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 1.0e-23 114.8 246 35.8
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 1.3e-23 114.4 245 36.7
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 2.9e-23 113.2 250 32.4
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 3.8e-23 112.8 249 33.3
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 8.4e-23 111.7 261 33.0
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 1.4e-22 110.9 203 36.9
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 1.9e-22 110.5 261 33.0
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.2e-22 109.8 200 36.5
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 4.2e-22 109.4 193 37.3
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 1.2e-21 107.8 178 37.1
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 1.2e-21 107.8 184 37.0
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 1.2e-21 107.8 246 35.4
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 2.1e-21 107.1 203 36.5
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 7.9e-21 105.1 258 34.5
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.0e-20 104.8 221 35.3
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 3.0e-20 103.2 257 35.8
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 5.1e-20 102.4 181 37.6
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 6.7e-20 102.1 265 30.9
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 1.1e-19 101.3 259 31.3
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 1.5e-19 100.9 179 36.9
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 1.9e-19 100.5 253 35.6
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 4.3e-19 99.4 178 37.1
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 7.4e-19 98.6 182 36.3
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 9.7e-19 98.2 255 33.3
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 9.7e-19 98.2 181 36.5
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 9.7e-19 98.2 219 34.2
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 2.8e-18 96.7 182 36.8
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 2.8e-18 96.7 162 38.9
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 2.8e-18 96.7 162 38.9
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 2.8e-18 96.7 162 38.9
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 3.7e-18 96.3 219 36.1
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 6.3e-18 95.5 181 35.9
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 6.3e-18 95.5 182 35.7
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 1.4e-17 94.4 186 35.5
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 2.4e-17 93.6 109 45.9
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 2.4e-17 93.6 109 45.9
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 3.1e-17 93.2 180 35.0
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 6.9e-17 92.0 243 30.0
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 1.2e-16 91.3 245 31.4
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 1.5e-16 90.9 110 44.5
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 2.6e-16 90.1 179 35.2
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 3.4e-16 89.7 107 42.1
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 4.5e-16 89.4 242 33.5
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 5.9e-16 89.0 238 31.1
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 8.5e-15 85.1 240 30.0
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 2.5e-14 83.6 144 35.4
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 7.2e-14 82.0 206 35.4
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 8.8e-12 75.1 102 42.2
CDE05G0211 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 1.1e-11 74.7 246 27.2
SEGI_06248 Sequoiadendron giganteum HOM05D005385 ORTHO05D004652 1.3e-07 61.2 90 38.9


User provided reference genes

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