Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold49G18292 Striga asiatica HOM05D007781 ORTHO05D009769 2.1e-149 532.7 354 100.0
MSTRG.14698 Avicennia marina HOM05D007781 ORTHO05D009769 6.8e-39 165.6 257 57.6
Migut.H01490 Erythranthe guttata HOM05D007781 ORTHO05D009769 2.1e-35 154.1 285 53.3
Oeu053970.1 Olea europaea HOM05D007781 ORTHO05D009769 1.7e-26 124.4 158 64.6
unitig_744.g24534 Utricularia gibba HOM05D007781 ORTHO05D009769 1.1e-17 95.1 383 38.4
Nitab4.5_0003432g0040 Nicotiana tabacum HOM05D007781 ORTHO05D009769 1.2e-16 91.7 164 51.2
Nitab4.5_0007940g0030 Nicotiana tabacum HOM05D007781 ORTHO05D009769 5.3e-15 86.3 196 44.9
Thecc.06G188400 Theobroma cacao HOM05D007781 ORTHO05D009769 9.0e-15 85.5 89 75.3
Sopen02g023130 Solanum pennellii HOM05D007781 ORTHO05D009769 1.5e-14 84.7 164 50.6
Glyma.07G196200 Glycine max HOM05D007781 ORTHO05D009769 2.0e-14 84.3 86 79.1
Dinv40553 Davidia involucrata HOM05D007781 ORTHO05D009769 2.6e-14 84.0 88 75.0
ClCG03G006020 Citrullus lanatus HOM05D007781 ORTHO05D009769 3.4e-14 83.6 102 68.6
CiPaw.09G059400 Carya illinoinensis HOM05D007781 ORTHO05D009769 4.4e-14 83.2 104 68.3
Ciclev10017149m.g Citrus clementina HOM05D007781 ORTHO05D009769 5.8e-14 82.8 100 70.0
Psat7g113680 Pisum sativum HOM05D007781 ORTHO05D009769 5.8e-14 82.8 106 66.0
Duzib235G1462 Durio zibethinus HOM05D007781 ORTHO05D009769 9.9e-14 82.0 131 56.5
Hma1.2p1_0126F.1_g059410 Hydrangea macrophylla HOM05D007781 ORTHO05D009769 9.9e-14 82.0 99 68.7
MD05G1313200 Malus domestica HOM05D007781 ORTHO05D009769 1.7e-13 81.3 103 67.0
MELO3C002600.2 Cucumis melo HOM05D007781 ORTHO05D009769 2.9e-13 80.5 108 64.8
Lj4g0009430 Lotus japonicus HOM05D007781 ORTHO05D009769 2.9e-13 80.5 92 72.8
CANSAT35G1759 Cannabis sativa HOM05D007781 ORTHO05D009769 4.9e-13 79.7 94 70.2
FvH4_3g09310 Fragaria vesca HOM05D007781 ORTHO05D009769 4.9e-13 79.7 85 74.1
FAN11G2776 Fragaria x ananassa HOM05D007781 ORTHO05D009769 4.9e-13 79.7 85 74.1
FAN16G0963 Fragaria x ananassa HOM05D007781 ORTHO05D009769 4.9e-13 79.7 85 74.1
RcHm_v2.0_Chr5g0008291 Rosa chinensis HOM05D007781 ORTHO05D009769 4.9e-13 79.7 107 63.6
FAN21G0375 Fragaria x ananassa HOM05D007781 ORTHO05D009769 6.4e-13 79.3 104 64.4
MD10G1295400 Malus domestica HOM05D007781 ORTHO05D009769 6.4e-13 79.3 107 65.4
TAR627G0113 Trochodendron aralioides HOM05D007781 ORTHO05D009769 6.4e-13 79.3 93 68.8
GSVIVG01003209001 Vitis vinifera HOM05D007781 ORTHO05D009769 8.4e-13 79.0 104 65.4
Actinidia05631 Actinidia chinensis HOM05D007781 ORTHO05D009769 1.1e-12 78.6 84 73.8
Cc02_g13310 Coffea canephora HOM05D007781 ORTHO05D009769 1.1e-12 78.6 103 64.1
CsaV3_1G012280 Cucumis sativus L. HOM05D007781 ORTHO05D009769 1.1e-12 78.6 108 65.7
Phvul.002G234100 Phaseolus vulgaris HOM05D007781 ORTHO05D009769 1.1e-12 78.6 89 70.8
CAN.G1164.27 Capsicum annuum HOM05D007781 ORTHO05D009769 1.4e-12 78.2 169 49.1
PGR042G1810 Punica granatum HOM05D007781 ORTHO05D009769 1.4e-12 78.2 295 34.9
PGSC0003DMG400029720 Solanum tuberosum HOM05D007781 ORTHO05D009769 1.4e-12 78.2 160 48.8
Nn1g06568 Nelumbo nucifera HOM05D007781 ORTHO05D009769 2.4e-12 77.4 98 65.3
Manes.16G027000 Manihot esculenta HOM05D007781 ORTHO05D009769 3.2e-12 77.0 83 73.5
COL.COLO4_31480 Corchorus olitorius HOM05D007781 ORTHO05D009769 4.2e-12 76.6 87 66.7
Gorai.009G169900 Gossypium raimondii HOM05D007781 ORTHO05D009769 5.4e-12 76.3 91 68.1
Sc17g0006220 Simmondsia chinensis HOM05D007781 ORTHO05D009769 5.4e-12 76.3 102 61.8
TPR.G12128 Trifolium pratense HOM05D007781 ORTHO05D009769 5.4e-12 76.3 106 65.1
VMungo0251G3178 Vigna mungo HOM05D007781 ORTHO05D009769 5.4e-12 76.3 88 70.5
Gohir.A05G161900 Gossypium hirsutum HOM05D007781 ORTHO05D009769 9.3e-12 75.5 85 71.8
Gohir.D05G164700 Gossypium hirsutum HOM05D007781 ORTHO05D009769 9.3e-12 75.5 85 71.8
CDE10G1000 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 1.6e-11 74.7 155 51.0
Solyc02g078270.3 Solanum lycopersicum HOM05D007781 ORTHO05D009769 1.6e-11 74.7 155 51.0
Sed0016416 Sechium edule HOM05D007781 ORTHO05D009769 7.8e-11 72.4 89 68.5
Prupe.4G046600 Prunus persica HOM05D007781 ORTHO05D009769 1.0e-10 72.0 104 65.4
Hund21227 Selenicereus undatus HOM05D007781 ORTHO05D009769 5.1e-10 69.7 91 62.6
arahy.Tifrunner.gnm1.ann1.QC0LUE Arachis hypogaea HOM05D007781 ORTHO05D009769 3.3e-09 67.0 94 67.0
Haze_06475 Corylus avellana HOM05D007781 ORTHO05D009769 3.3e-09 67.0 86 68.6
Lsat_1_v5_gn_7_21141 Lactuca sativa HOM05D007781 ORTHO05D009769 4.3e-09 66.6 132 51.5
THA.LOC104812795 Tarenaya hassleriana HOM05D007781 ORTHO05D009769 4.3e-09 66.6 85 65.9
HPP92_027869 Vanilla planifolia HOM05D007781 ORTHO05D009769 4.3e-09 66.6 154 48.7
arahy.Tifrunner.gnm1.ann1.KV0YZV Arachis hypogaea HOM05D007781 ORTHO05D009769 5.6e-09 66.2 92 67.4
Eucgr.E03314 Eucalyptus grandis HOM05D007781 ORTHO05D009769 9.6e-09 65.5 112 58.0
Sp7g19740 Schrenkiella parvula HOM05D007781 ORTHO05D009769 1.3e-08 65.1 83 69.9
Aqoxy1G02434 Aquilegia oxysepala HOM05D007781 ORTHO05D009769 2.8e-08 63.9 127 53.5
CARHR228320 Cardamine hirsuta HOM05D007781 ORTHO05D009769 2.8e-08 63.9 82 69.5
SHI01775 Sapria himalayana HOM05D007781 ORTHO05D009769 2.8e-08 63.9 70 80.0
PSO675G6168 Papaver somniferum HOM05D007781 ORTHO05D009769 4.8e-08 63.2 82 65.9
Lalb_Chr16g0383721 Lupinus albus HOM05D007781 ORTHO05D009769 8.1e-08 62.4 89 64.0
Potri.004G043100 Populus trichocarpa HOM05D007781 ORTHO05D009769 8.1e-08 62.4 82 68.3
Aa31LG6G3610 Aethionema arabicum HOM05D007781 ORTHO05D009769 1.1e-07 62.0 83 67.5
AT4G21610 Arabidopsis thaliana HOM05D007781 ORTHO05D009769 1.1e-07 62.0 84 66.7
Medtr4g088850 Medicago truncatula HOM05D007781 ORTHO05D009769 1.1e-07 62.0 44 65.9
AL7G32390 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.4e-07 61.6 84 65.5
A08p15070 Brassica napus HOM05D007781 ORTHO05D009769 1.4e-07 61.6 86 66.3
C03p83160 Brassica napus HOM05D001541 ORTHO05D009769 1.4e-07 61.6 86 66.3
Os01g0612700 Oryza sativa ssp. japonica HOM05D021202 ORTHO05D009769 1.4e-07 61.6 115 56.5
Sabra04G0026700 Salix brachista HOM05D007781 ORTHO05D009769 1.4e-07 61.6 82 67.1
PSO541G0656 Papaver somniferum HOM05D007781 ORTHO05D009769 1.8e-07 61.2 82 64.6
Thhalv10026412m.g Eutrema salsugineum HOM05D007781 ORTHO05D009769 2.4e-07 60.8 83 66.3
Peaxi162Scf00736g00429 Petunia axillaris HOM05D007781 ORTHO05D009769 4.0e-07 60.1 77 44.2
BcaB03g11687 Brassica carinata HOM05D001738 ORTHO05D001644 5.3e-07 59.7 83 67.5
CDE10G0168 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 5.3e-07 59.7 154 46.1
DCAR_028076 Daucus carota HOM05D007781 ORTHO05D009769 9.0e-07 58.9 74 41.9
BcaC01g00689 Brassica carinata HOM05D001738 ORTHO05D001644 1.5e-06 58.2 86 64.0
BolC3t20599H Brassica oleracea HOM05D007781 ORTHO05D009769 1.5e-06 58.2 86 64.0
CSS0040858 Camellia sinensis var. sinensis HOM05D007781 ORTHO05D009769 9.9e-06 55.5 38 60.5


User provided reference genes

Program Settings