Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 3.1e-216 755.0 416 100.0
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 5.4e-144 515.0 418 64.4
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 1.2e-143 513.8 422 66.6
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 2.0e-143 513.1 443 62.1
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 3.5e-143 512.3 417 72.4
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 6.8e-139 498.0 314 78.7
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 9.8e-138 494.2 348 73.0
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 1.7e-137 493.4 295 80.3
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 3.7e-137 492.3 325 75.1
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 3.7e-137 492.3 292 79.8
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 8.3e-137 491.1 325 74.8
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 8.3e-137 491.1 417 63.5
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 1.4e-136 490.3 292 79.5
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 2.4e-136 489.6 316 76.6
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 2.4e-136 489.6 314 78.0
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 3.2e-136 489.2 302 78.1
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 1.2e-135 487.3 348 70.1
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 1.6e-135 486.9 417 60.7
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 1.6e-135 486.9 418 63.6
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 3.5e-135 485.7 423 62.2
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 1.3e-134 483.8 287 80.8
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 1.3e-134 483.8 343 71.7
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 2.3e-134 483.0 310 76.5
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 3.0e-134 482.6 292 79.8
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 3.0e-134 482.6 320 75.3
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 6.6e-134 481.5 423 61.5
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 1.9e-133 479.9 418 63.6
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 2.5e-133 479.6 313 75.4
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 9.5e-133 477.6 306 74.8
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 1.6e-132 476.9 418 60.8
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 1.6e-132 476.9 429 60.6
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 2.8e-132 476.1 428 60.3
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 2.8e-132 476.1 293 77.1
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 3.6e-132 475.7 343 69.7
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 3.6e-132 475.7 293 77.1
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 4.7e-132 475.3 343 70.0
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 6.2e-132 474.9 422 60.7
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 1.1e-131 474.2 309 73.8
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 1.4e-131 473.8 292 78.1
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 1.4e-131 473.8 287 79.4
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 1.8e-131 473.4 348 70.1
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 2.3e-131 473.0 305 76.4
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 4.0e-131 472.2 354 68.1
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 4.0e-131 472.2 326 71.5
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 5.2e-131 471.9 348 69.8
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 8.9e-131 471.1 287 78.0
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 1.2e-130 470.7 419 59.9
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 2.0e-130 469.9 348 67.5
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 2.6e-130 469.5 302 75.8
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 7.5e-130 468.0 291 76.6
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 1.7e-129 466.8 298 75.8
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 3.7e-129 465.7 318 71.4
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 4.9e-129 465.3 325 72.3
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 2.4e-128 463.0 342 68.1
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 4.1e-128 462.2 293 75.4
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 7.1e-128 461.5 421 60.1
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 4.6e-127 458.8 427 58.3
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.0e-126 457.6 323 70.6
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 1.9e-125 453.4 304 74.0
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 4.3e-125 452.2 350 64.3
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 1.2e-124 450.7 423 58.4
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 8.1e-124 448.0 308 70.1
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 1.1e-123 447.6 306 70.6
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 2.3e-123 446.4 308 70.1
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 3.1e-123 446.0 344 65.7
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 4.0e-123 445.7 340 66.8
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 4.0e-123 445.7 306 70.6
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 7.6e-122 441.4 351 64.1
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 9.9e-122 441.0 333 66.7
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 2.9e-121 439.5 290 73.1
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 2.9e-121 439.5 290 73.1
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 2.9e-121 439.5 339 65.2
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 4.9e-121 438.7 421 57.0
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 1.9e-120 436.8 289 70.6
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 2.4e-120 436.4 331 66.2
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 3.2e-120 436.0 291 70.4
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 9.2e-120 434.5 418 57.4
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 9.2e-120 434.5 292 69.5
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 2.1e-119 433.3 348 63.5
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 2.1e-119 433.3 295 70.5
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 3.5e-119 432.6 306 69.3
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 3.5e-119 432.6 330 67.0
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 3.5e-119 432.6 332 65.1
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 6.0e-119 431.8 331 65.3
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 3.0e-118 429.5 291 71.1
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 1.1e-117 427.6 339 63.7
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 5.6e-117 425.2 310 66.8
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 3.6e-116 422.5 314 66.9
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 4.7e-116 422.2 348 63.5
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 6.2e-116 421.8 348 63.5
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.4e-115 420.6 348 62.4
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 3.1e-115 419.5 337 63.5
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 8.9e-115 417.9 340 62.4
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 2.6e-114 416.4 348 61.2
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 3.4e-114 416.0 329 65.3
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 3.4e-114 416.0 329 65.3
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 7.6e-114 414.8 337 63.8
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 7.6e-114 414.8 349 62.8
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 2.2e-113 413.3 339 63.4
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 2.2e-113 413.3 406 54.9
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 2.9e-113 412.9 334 64.1
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 3.8e-113 412.5 291 67.7
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 6.4e-113 411.8 329 65.0
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 3.2e-112 409.5 304 66.4
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 9.3e-112 407.9 304 62.8
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 1.2e-111 407.5 287 69.0
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 1.0e-110 404.4 290 63.4
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 1.7e-110 403.7 311 65.3
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 3.9e-110 402.5 419 54.2
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 2.5e-109 399.8 294 67.3
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 3.3e-109 399.4 353 60.6
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 2.8e-108 396.4 289 67.5
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 3.6e-108 396.0 331 62.8
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 1.1e-107 394.4 333 62.8
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 1.4e-107 394.0 287 70.4
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 1.8e-107 393.7 333 62.5
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 3.1e-107 392.9 328 63.7
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 4.0e-107 392.5 333 62.5
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 5.3e-107 392.1 298 66.4
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 9.0e-107 391.3 306 65.7
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 2.0e-106 390.2 306 65.7
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 2.0e-106 390.2 333 62.2
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 9.9e-106 387.9 260 72.7
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 1.7e-105 387.1 290 67.2
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 3.8e-105 386.0 275 67.6
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 6.4e-105 385.2 409 49.6
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 3.2e-104 382.9 325 61.8
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 3.2e-104 382.9 325 61.8
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 5.4e-104 382.1 285 64.2
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 9.3e-104 381.3 345 58.6
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 9.3e-104 381.3 345 58.6
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 2.7e-103 379.8 288 66.7
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 6.0e-103 378.6 325 61.2
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 1.9e-96 357.1 248 71.4
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 1.1e-93 347.8 313 56.2
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.8e-91 340.5 251 66.5
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 1.0e-89 334.7 226 72.1
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 2.9e-89 333.2 305 55.7
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 1.4e-72 277.7 194 72.7
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 4.4e-61 239.6 300 43.7
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 1.6e-55 221.1 293 42.3
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 2.7e-55 220.3 166 63.9
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 2.3e-54 217.2 160 65.0
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 5.0e-49 199.5 258 44.6
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 3.7e-44 183.3 248 44.4
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 1.0e-30 138.7 189 42.9
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 1.7e-25 121.3 72 73.6
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 9.5e-24 115.5 173 42.8
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 1.7e-17 94.7 43 95.3
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 6.6e-17 92.8 283 27.9
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 1.1e-14 85.5 56 73.2
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 1.2e-13 82.0 101 50.5


User provided reference genes

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