Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 8.9e-157 557.0 300 100.0
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 7.6e-132 474.2 264 97.7
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 1.4e-117 426.8 264 87.5
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 1.4e-117 426.8 264 86.0
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 2.0e-116 422.9 264 85.2
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 2.2e-115 419.5 264 86.4
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.9e-115 419.1 264 85.2
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 2.9e-115 419.1 264 84.1
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 1.4e-114 416.8 264 84.1
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 5.5e-114 414.8 264 83.7
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 9.3e-114 414.1 264 83.7
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 1.2e-113 413.7 264 83.7
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 2.1e-113 412.9 264 84.8
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 2.1e-113 412.9 264 85.2
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 2.7e-113 412.5 264 83.7
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 3.5e-113 412.1 264 85.2
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 4.6e-113 411.8 264 84.1
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 7.9e-113 411.0 264 84.8
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 7.9e-113 411.0 264 83.3
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.0e-112 410.6 264 83.0
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 1.0e-112 410.6 264 83.0
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.8e-112 409.8 264 83.3
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.8e-112 409.8 280 81.1
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 3.0e-112 409.1 264 83.3
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 3.0e-112 409.1 264 82.6
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 3.0e-112 409.1 264 83.3
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 3.0e-112 409.1 264 83.3
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 3.9e-112 408.7 264 82.2
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 3.9e-112 408.7 264 83.0
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 3.9e-112 408.7 264 83.7
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 5.1e-112 408.3 264 82.6
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 6.7e-112 407.9 264 84.5
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 8.7e-112 407.5 264 81.8
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 8.7e-112 407.5 264 84.1
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 8.7e-112 407.5 264 83.7
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 1.1e-111 407.1 264 82.2
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.1e-111 407.1 264 82.2
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.1e-111 407.1 264 82.2
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 1.1e-111 407.1 264 82.6
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.1e-111 407.1 264 84.1
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 1.5e-111 406.8 264 82.6
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 1.5e-111 406.8 264 82.6
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 1.5e-111 406.8 264 82.6
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 1.5e-111 406.8 264 82.6
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 1.9e-111 406.4 264 82.6
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 1.9e-111 406.4 264 82.6
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 2.5e-111 406.0 264 83.3
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 5.7e-111 404.8 264 81.1
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 5.7e-111 404.8 264 81.8
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 7.4e-111 404.4 264 81.4
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 9.6e-111 404.1 264 84.1
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 1.3e-110 403.7 264 81.1
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 1.3e-110 403.7 263 81.7
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 1.3e-110 403.7 264 82.2
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 1.6e-110 403.3 264 83.7
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 2.1e-110 402.9 262 82.1
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 2.1e-110 402.9 264 83.7
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 3.7e-110 402.1 264 81.8
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 6.3e-110 401.4 264 80.7
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 8.2e-110 401.0 264 80.7
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 1.1e-109 400.6 264 81.1
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 1.4e-109 400.2 264 79.9
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 1.8e-109 399.8 264 81.4
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 2.4e-109 399.4 264 80.3
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 3.1e-109 399.1 264 80.7
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 3.1e-109 399.1 264 81.1
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 4.1e-109 398.7 264 80.3
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 6.9e-109 397.9 264 81.8
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 6.9e-109 397.9 264 79.9
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 9.0e-109 397.5 264 80.3
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 1.2e-108 397.1 264 81.4
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.5e-108 396.7 264 79.2
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 1.5e-108 396.7 264 79.5
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 2.6e-108 396.0 308 71.8
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 5.9e-108 394.8 264 80.7
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 5.9e-108 394.8 264 80.7
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 1.0e-107 394.0 264 79.5
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 1.0e-107 394.0 264 79.5
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 1.3e-107 393.7 264 79.5
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 2.2e-107 392.9 264 79.5
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 3.8e-107 392.1 264 80.3
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 5.0e-107 391.7 264 79.9
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 8.4e-107 391.0 264 79.5
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 4.2e-106 388.7 268 78.0
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 9.3e-106 387.5 264 79.2
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 9.3e-106 387.5 252 80.6
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 9.3e-106 387.5 264 76.5
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 2.1e-105 386.3 264 77.3
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 2.7e-105 386.0 264 78.8
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 2.7e-105 386.0 264 78.8
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 2.7e-105 386.0 264 78.8
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 6.1e-105 384.8 264 77.3
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 1.0e-104 384.0 250 82.0
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 1.3e-104 383.6 264 77.7
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 3.0e-104 382.5 264 78.8
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 3.0e-104 382.5 264 78.8
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 3.9e-104 382.1 250 81.6
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 1.5e-103 380.2 264 78.4
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 2.5e-103 379.4 264 76.9
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 2.5e-103 379.4 262 78.6
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 4.3e-103 378.6 247 81.8
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 4.3e-103 378.6 264 78.0
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 4.3e-103 378.6 264 78.0
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 4.3e-103 378.6 264 78.0
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 4.3e-103 378.6 264 78.0
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 4.3e-103 378.6 264 78.4
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 4.3e-103 378.6 264 77.7
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 5.7e-103 378.3 264 79.2
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 7.4e-103 377.9 264 78.0
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 9.7e-103 377.5 264 78.0
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 9.7e-103 377.5 264 78.0
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 9.7e-103 377.5 264 78.0
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 9.7e-103 377.5 264 78.0
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 1.3e-102 377.1 270 75.2
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 1.6e-102 376.7 264 77.7
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 2.8e-102 375.9 264 77.7
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 2.8e-102 375.9 264 75.8
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 3.7e-102 375.6 264 77.7
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 3.7e-102 375.6 264 77.7
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 8.2e-102 374.4 264 77.7
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 1.1e-101 374.0 264 77.3
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 1.1e-101 374.0 264 78.4
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 1.4e-101 373.6 264 75.0
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 1.8e-101 373.2 264 78.8
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 5.9e-100 368.2 264 75.4
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 1.3e-99 367.1 270 71.9
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 5.0e-99 365.2 264 77.3
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 6.5e-99 364.8 264 76.9
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 9.4e-98 360.9 250 75.2
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 2.1e-97 359.8 265 75.1
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 2.5e-95 352.8 250 76.4
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 2.5e-95 352.8 274 73.0
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 4.8e-94 348.6 218 83.9
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 3.1e-93 345.9 233 77.3
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.2e-92 344.0 264 72.3
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 7.7e-92 341.3 210 85.2
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 1.0e-91 340.9 264 73.1
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 2.2e-91 339.7 247 75.7
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 8.5e-91 337.8 241 78.0
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.6e-89 333.6 264 68.2
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 4.7e-89 332.0 220 76.4
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 1.0e-88 330.9 227 75.3
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.3e-86 323.9 264 66.7
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 6.3e-86 321.6 270 66.7
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 2.9e-83 312.8 264 68.9
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 1.6e-81 307.0 267 63.7
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 7.0e-77 291.6 241 65.1
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.9e-75 286.2 229 64.2
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 1.2e-73 280.8 251 64.5
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 4.7e-73 278.9 203 69.5
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.8e-72 276.9 251 64.5
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 5.7e-71 271.9 264 60.6
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 3.7e-70 269.2 250 61.2
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 4.8e-70 268.9 206 71.8
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 1.3e-67 260.8 270 55.2
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 5.0e-67 258.8 211 63.5
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 3.6e-65 252.7 271 58.7
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.9e-54 216.5 237 57.4
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 9.2e-53 211.5 247 47.8
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 3.0e-51 206.5 131 80.9
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 1.5e-50 204.1 138 79.0
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 4.3e-50 202.6 250 49.6
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 2.0e-47 193.7 121 83.5
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 2.0e-47 193.7 180 62.2
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 1.3e-38 164.5 119 75.6
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 1.1e-32 144.8 144 61.1
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 2.6e-31 140.2 188 46.8
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 5.6e-26 122.5 97 68.0
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 1.5e-23 114.4 69 84.1


User provided reference genes

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