Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold49G18207 Striga asiatica HOM05D002505 ORTHO05D006559 6.4e-226 787.3 476 100.0
MSTRG.14571 Avicennia marina HOM05D002505 ORTHO05D006559 1.2e-128 464.2 406 66.5
Migut.H01653 Erythranthe guttata HOM05D002505 ORTHO05D006559 1.3e-104 384.4 496 60.7
Oeu019749.1 Olea europaea HOM05D002505 ORTHO05D006559 4.8e-104 382.5 408 57.8
PGSC0003DMG400022499 Solanum tuberosum HOM05D002505 ORTHO05D006559 3.7e-96 356.3 410 55.9
Peaxi162Scf00225g00129 Petunia axillaris HOM05D002505 ORTHO05D006559 2.4e-95 353.6 411 55.7
Actinidia12750 Actinidia chinensis HOM05D002505 ORTHO05D006559 2.2e-93 347.1 424 54.7
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 4.9e-93 345.9 499 47.5
Solyc01g098030.4 Solanum lycopersicum HOM05D002505 ORTHO05D006559 8.4e-93 345.1 404 55.9
Cc05_g16590 Coffea canephora HOM05D002505 ORTHO05D006559 1.9e-92 344.0 419 56.3
Sopen01g041610 Solanum pennellii HOM05D002505 ORTHO05D006559 2.5e-92 343.6 409 55.7
CSS0039073 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 2.1e-91 340.5 416 51.4
Cpa.g.sc77.87 Carica papaya HOM05D002505 ORTHO05D006559 1.8e-90 337.4 410 53.4
TWI59G0446 Tripterygium wilfordii HOM05D002505 ORTHO05D006559 2.3e-90 337.0 405 51.9
TAR626G1844 Trochodendron aralioides HOM05D002505 ORTHO05D006559 4.3e-89 332.8 453 51.2
CAN.G134.186 Capsicum annuum HOM05D002505 ORTHO05D006559 4.8e-88 329.3 353 60.1
Thecc.09G195000 Theobroma cacao HOM05D002505 ORTHO05D006559 1.1e-87 328.2 336 60.7
Nitab4.5_0002840g0110 Nicotiana tabacum HOM05D002505 ORTHO05D006559 1.4e-87 327.8 326 61.7
Eucgr.D02598 Eucalyptus grandis HOM05D002505 ORTHO05D006559 1.8e-87 327.4 417 51.1
Glyma.09G030100 Glycine max HOM05D002505 ORTHO05D006559 3.1e-87 326.6 419 52.3
CiPaw.15G113000 Carya illinoinensis HOM05D002505 ORTHO05D006559 6.9e-87 325.5 411 52.1
CSS0016681 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 2.0e-86 323.9 427 51.3
Sc18g0006950 Simmondsia chinensis HOM05D002505 ORTHO05D006559 2.6e-86 323.6 449 49.7
Rhsim09G0088500 Rhododendron simsii HOM05D002505 ORTHO05D006559 2.2e-85 320.5 423 53.9
Duzib168G0650 Durio zibethinus HOM05D002505 ORTHO05D006559 8.5e-85 318.5 416 51.7
Gohir.D13G211600 Gossypium hirsutum HOM05D002505 ORTHO05D006559 2.5e-84 317.0 413 52.3
Lj6g0017559 Lotus japonicus HOM05D002505 ORTHO05D006559 3.2e-84 316.6 420 52.1
Gorai.013G241700 Gossypium raimondii HOM05D002505 ORTHO05D006559 5.5e-84 315.8 412 52.4
Nitab4.5_0002361g0170 Nicotiana tabacum HOM05D002505 ORTHO05D006559 5.5e-84 315.8 325 60.9
VMungo0540G1128 Vigna mungo HOM05D002505 ORTHO05D006559 1.2e-83 314.7 391 54.2
Nn4g25029 Nelumbo nucifera HOM05D002505 ORTHO05D006559 4.6e-83 312.8 413 51.1
Gohir.A13G207000 Gossypium hirsutum HOM05D002505 ORTHO05D006559 7.9e-83 312.0 418 51.9
MELO3C016182.2 Cucumis melo HOM05D002505 ORTHO05D006559 6.7e-82 308.9 411 50.6
ClCG07G010710 Citrullus lanatus HOM05D002505 ORTHO05D006559 1.1e-81 308.1 410 49.8
Prupe.4G127000 Prunus persica HOM05D002505 ORTHO05D006559 3.3e-81 306.6 402 53.7
Phvul.006G122700 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 1.3e-80 304.7 356 56.7
vmacro00789 Vaccinium macrocarpon HOM05D002505 ORTHO05D006559 3.7e-80 303.1 448 48.2
VMungo1309G1878 Vigna mungo HOM05D002505 ORTHO05D006559 4.8e-80 302.8 417 53.2
Phvul.006G073200 Phaseolus vulgaris HOM05D002505 ORTHO05D006559 6.3e-80 302.4 425 52.5
Potri.015G137000 Populus trichocarpa HOM05D002505 ORTHO05D006559 1.1e-79 301.6 413 50.4
PGR102G1955 Punica granatum HOM05D002505 ORTHO05D006559 2.4e-79 300.4 416 46.4
arahy.Tifrunner.gnm1.ann1.C6HHUS Arachis hypogaea HOM05D002505 ORTHO05D006559 4.1e-79 299.7 472 46.0
arahy.Tifrunner.gnm1.ann1.GJQ7VP Arachis hypogaea HOM05D002505 ORTHO05D006559 4.1e-79 299.7 473 45.7
MD10G1217100 Malus domestica HOM05D002505 ORTHO05D006559 5.3e-79 299.3 324 59.3
GSVIVG01031552001 Vitis vinifera HOM05D002505 ORTHO05D006559 1.2e-78 298.1 201 73.6
arahy.Tifrunner.gnm1.ann1.91B0ED Arachis hypogaea HOM05D002505 ORTHO05D006559 4.5e-78 296.2 468 45.3
BraA06t23318Z Brassica rapa HOM05D001023 ORTHO05D006559 1.7e-77 294.3 419 50.1
CANSAT21G0880 Cannabis sativa HOM05D002505 ORTHO05D006559 3.8e-77 293.1 408 49.3
Sed0021026 Sechium edule HOM05D002505 ORTHO05D006559 5.0e-77 292.7 408 50.7
Atru.chr3.1220 Acer truncatum HOM05D002505 ORTHO05D006559 1.1e-76 291.6 452 46.7
AT1G53645 Arabidopsis thaliana HOM05D002505 ORTHO05D006559 1.1e-76 291.6 453 45.5
MD05G1239100 Malus domestica HOM05D002505 ORTHO05D006559 1.4e-76 291.2 421 49.9
CsaV3_4G007590 Cucumis sativus L. HOM05D002505 ORTHO05D006559 1.9e-76 290.8 412 48.3
Ca_18602_v3 Cicer arietinum L. HOM05D002505 ORTHO05D006559 2.5e-76 290.4 425 48.7
Sp1g40180 Schrenkiella parvula HOM05D002505 ORTHO05D006559 2.5e-76 290.4 436 47.0
Atru.chr1.1039 Acer truncatum HOM05D002505 ORTHO05D006559 4.2e-76 289.7 424 47.9
AUR62011379 Chenopodium quinoa HOM05D002505 ORTHO05D006559 6.1e-75 285.8 413 47.7
A06p00890 Brassica napus HOM05D001023 ORTHO05D006559 7.9e-75 285.4 336 54.8
AL1G62310 Arabidopsis lyrata HOM05D002505 ORTHO05D006559 1.0e-74 285.0 489 42.7
BcaC08g43545 Brassica carinata HOM05D002505 ORTHO05D006559 1.4e-74 284.6 404 50.2
FAN16G0440 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.8e-74 284.3 204 70.1
Thhalv10011382m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 2.3e-74 283.9 447 45.6
FvH4_3g14000 Fragaria vesca HOM05D002505 ORTHO05D006559 2.3e-74 283.9 201 70.1
BolC6t36013H Brassica oleracea HOM05D001023 ORTHO05D006559 3.0e-74 283.5 404 50.2
Carub.0001s4291 Capsella rubella HOM05D002505 ORTHO05D006559 3.0e-74 283.5 353 51.8
ATR0057G033 Amborella trichopoda HOM05D002505 ORTHO05D006559 6.7e-74 282.3 380 50.3
C06p09440 Brassica napus HOM05D001023 ORTHO05D006559 8.8e-74 282.0 410 49.8
Manes.08G161700 Manihot esculenta HOM05D002505 ORTHO05D006559 8.8e-74 282.0 400 48.5
FAN25G1470 Fragaria x ananassa HOM05D002505 ORTHO05D006559 1.5e-73 281.2 327 57.2
Lsat_1_v5_gn_5_3041 Lactuca sativa HOM05D002505 ORTHO05D006559 2.0e-73 280.8 383 48.6
BcaB02g10898 Brassica carinata HOM05D002505 ORTHO05D006559 3.3e-73 280.0 397 49.1
CARHR043910 Cardamine hirsuta HOM05D002505 ORTHO05D006559 3.3e-73 280.0 462 45.0
FAN21G2970 Fragaria x ananassa HOM05D002505 ORTHO05D006559 3.3e-73 280.0 201 69.2
RcHm_v2.0_Chr5g0023231 Rosa chinensis HOM05D002505 ORTHO05D006559 9.7e-73 278.5 345 53.9
Aqoxy1G00117 Aquilegia oxysepala HOM05D002505 ORTHO05D006559 2.2e-72 277.3 346 51.7
FAN11G2806 Fragaria x ananassa HOM05D002505 ORTHO05D006559 2.8e-72 276.9 381 50.1
HanXRQChr05g0159341 Helianthus annuus HOM05D002505 ORTHO05D006559 1.1e-71 275.0 297 50.8
EL10Ac5g10510 Beta vulgaris HOM05D002505 ORTHO05D006559 1.4e-71 274.6 446 40.8
BcaB07g33312 Brassica carinata HOM05D002505 ORTHO05D006559 3.1e-71 273.5 419 47.5
unitig_21.g20249 Utricularia gibba HOM05D002505 ORTHO05D006559 3.1e-71 273.5 206 63.6
HPP92_002279 Vanilla planifolia HOM05D002505 ORTHO05D006559 3.1e-71 273.5 355 49.0
ECA246G4077 Erigeron canadensis HOM05D002505 ORTHO05D006559 4.1e-71 273.1 429 43.6
DCAR_009664 Daucus carota HOM05D002505 ORTHO05D006559 5.3e-71 272.7 191 68.1
Hund09330 Selenicereus undatus HOM05D002505 ORTHO05D006559 1.5e-70 271.2 427 46.6
AUR62016680 Chenopodium quinoa HOM05D002505 ORTHO05D006559 5.9e-70 269.2 412 47.6
Rhsim06G0244600 Rhododendron simsii HOM05D002505 ORTHO05D006559 5.9e-70 269.2 387 51.2
Medtr8g078230 Medicago truncatula HOM05D002505 ORTHO05D006559 1.7e-69 267.7 306 54.2
THA.LOC104822601 Tarenaya hassleriana HOM05D002505 ORTHO05D006559 5.5e-68 262.7 415 48.0
AUR62007763 Chenopodium quinoa HOM05D002505 ORTHO05D006559 7.2e-68 262.3 419 42.5
Aa31LG10G1650 Aethionema arabicum HOM05D002505 ORTHO05D006559 1.2e-67 261.5 456 42.3
Ah.09g227860 Amaranthus hybridus HOM05D002505 ORTHO05D006559 1.2e-67 261.5 418 42.8
AUR62002958 Chenopodium quinoa HOM05D002505 ORTHO05D006559 4.7e-67 259.6 408 41.9
PSO170G3666 Papaver somniferum HOM05D002505 ORTHO05D006559 1.4e-66 258.1 317 53.3
Sabra15G0148600 Salix brachista HOM05D002505 ORTHO05D006559 2.3e-66 257.3 416 42.3
PSO017G2893 Papaver somniferum HOM05D002505 ORTHO05D006559 7.4e-65 252.3 317 52.7
Zm00001eb060430 Zea mays HOM05D002505 ORTHO05D006559 2.8e-64 250.4 334 47.9
Lj1C206G15 Lonicera japonica HOM05D002505 ORTHO05D006559 2.4e-63 247.3 164 73.2
SHI32899 Sapria himalayana HOM05D002505 ORTHO05D006559 2.4e-63 247.3 312 50.0
Ciclev10019766m.g Citrus clementina HOM05D002505 ORTHO05D006559 2.2e-61 240.7 387 47.0
CDE05G0972 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 8.5e-61 238.8 415 43.9
CDE02G1608 Ceratophyllum demersum HOM05D002505 ORTHO05D006559 1.9e-60 237.7 331 48.0
Os06g0664400 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D006559 5.5e-60 236.1 308 49.0
Lalb_Chr20g0120281 Lupinus albus HOM05D002505 ORTHO05D006559 8.0e-59 232.3 398 46.0
Psat4g091000 Pisum sativum HOM05D002505 ORTHO05D006559 9.7e-57 225.3 391 43.5
BolC6t36693H Brassica oleracea HOM05D002505 ORTHO05D006559 6.3e-56 222.6 336 46.1
A05p18000 Brassica napus HOM05D002505 ORTHO05D006559 1.4e-55 221.5 176 63.6
BraA05t20694Z Brassica rapa HOM05D002505 ORTHO05D006559 1.4e-55 221.5 176 63.6
C06p15180 Brassica napus HOM05D002505 ORTHO05D006559 1.5e-52 211.5 140 72.1
Dinv17234 Davidia involucrata HOM05D002505 ORTHO05D006559 1.7e-48 198.0 410 40.7
Haze_18498 Corylus avellana HOM05D002505 ORTHO05D006559 5.2e-42 176.4 316 46.5
QL04p094522 Quercus lobata HOM05D002505 ORTHO05D000632 6.8e-42 176.0 606 31.7
BcaC08g44112 Brassica carinata HOM05D002505 ORTHO05D006559 5.7e-41 172.9 139 63.3
Thhalv10012156m.g Eutrema salsugineum HOM05D002505 ORTHO05D006559 2.3e-37 161.0 106 71.7
Dinv29488 Davidia involucrata HOM05D002505 ORTHO05D006559 1.5e-33 148.3 90 78.9
Glyma.15G135900 Glycine max HOM05D002505 ORTHO05D006559 9.8e-33 145.6 130 58.5
Ah.07g202770 Amaranthus hybridus HOM05D002505 ORTHO05D006559 3.3e-28 130.6 91 69.2
Mapoly0043s0004 Marchantia polymorpha HOM05D002505 ORTHO05D006559 7.5e-25 119.4 264 33.3
Pp3c12_26140 Physcomitrium patens HOM05D002505 ORTHO05D006559 2.9e-24 117.5 219 32.4
Ah.13g066500 Amaranthus hybridus HOM05D002505 ORTHO05D006559 6.4e-24 116.3 316 34.2
AagrBONN_evm.TU.Sc2ySwM_228.276 Anthoceros agrestis HOM05D002505 ORTHO05D006559 7.8e-22 109.4 127 38.6
Actinidia26206 Actinidia chinensis HOM05D002505 ORTHO05D006559 3.0e-21 107.5 64 79.7
CSS0015020 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D006559 1.5e-20 105.1 281 35.9
QL04p094482 Quercus lobata HOM05D000280 ORTHO05D006559 4.7e-19 100.1 63 79.4
Haze_18499 Corylus avellana HOM05D002505 ORTHO05D006559 9.9e-17 92.4 62 74.2
RcHm_v2.0_Chr5g0023281 Rosa chinensis HOM05D002505 ORTHO05D006559 1.7e-16 91.7 62 74.2
Ah.13g066490 Amaranthus hybridus HOM05D002505 ORTHO05D006559 3.5e-14 84.0 63 68.3
SEGI_13390 Sequoiadendron giganteum HOM05D002505 ORTHO05D006559 3.5e-14 84.0 82 47.6
Sopen01g041600 Solanum pennellii HOM05D002505 ORTHO05D006559 1.9e-07 61.6 164 36.6
COL.COLO4_21461 Corchorus olitorius HOM05D002505 ORTHO05D006559 3.2e-07 60.8 223 35.0
QL04p094472 Quercus lobata HOM05D002505 ORTHO05D006559 1.6e-06 58.5 31 80.6
AagrBONN_evm.TU.Sc2ySwM_117.3603 Anthoceros agrestis HOM05D002505 ORTHO05D006559 3.5e-06 57.4 82 30.5


User provided reference genes

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