Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 1.4e-195 686.0 339 100.0
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 1.8e-129 466.5 358 69.6
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 3.6e-122 442.2 358 65.9
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 1.8e-121 439.9 291 75.3
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 3.1e-121 439.1 289 76.5
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 3.1e-121 439.1 289 74.4
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 1.5e-120 436.8 287 74.2
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 1.5e-120 436.8 362 63.3
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 2.0e-120 436.4 289 72.7
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 4.4e-120 435.3 289 74.0
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 4.4e-120 435.3 358 63.4
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 9.8e-120 434.1 289 74.4
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 9.8e-120 434.1 289 74.0
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 1.7e-119 433.3 279 76.3
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 3.7e-119 432.2 289 73.0
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 4.9e-119 431.8 289 72.3
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 1.1e-118 430.6 290 73.8
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 1.1e-118 430.6 289 72.7
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 1.4e-118 430.3 268 77.2
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 5.4e-118 428.3 289 72.0
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 9.2e-118 427.6 338 65.1
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 1.2e-117 427.2 289 73.0
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 2.1e-117 426.4 278 74.5
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 2.1e-117 426.4 289 72.3
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.7e-117 426.0 289 72.0
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 2.7e-117 426.0 265 77.4
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 3.5e-117 425.6 354 64.1
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 6.0e-117 424.9 288 73.3
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 7.8e-117 424.5 265 78.1
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 1.3e-116 423.7 293 73.4
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 2.3e-116 422.9 358 61.7
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 2.3e-116 422.9 287 72.1
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 3.0e-116 422.5 265 77.4
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 3.0e-116 422.5 354 62.7
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 3.0e-116 422.5 314 68.2
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 3.9e-116 422.2 265 78.1
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 3.9e-116 422.2 356 63.5
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 3.9e-116 422.2 289 70.9
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 3.9e-116 422.2 289 72.0
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 5.0e-116 421.8 354 62.7
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 5.0e-116 421.8 289 71.3
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 6.6e-116 421.4 285 71.9
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 6.6e-116 421.4 298 69.8
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 1.1e-115 420.6 265 77.4
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 1.5e-115 420.2 265 77.0
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 1.5e-115 420.2 280 73.6
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 1.9e-115 419.9 269 76.6
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.9e-115 419.9 354 62.1
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 1.9e-115 419.9 289 72.0
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 1.9e-115 419.9 289 72.0
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 3.3e-115 419.1 246 81.7
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 3.3e-115 419.1 278 73.0
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 4.3e-115 418.7 279 74.2
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 4.3e-115 418.7 358 62.3
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 5.6e-115 418.3 265 75.1
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 5.6e-115 418.3 289 70.6
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 9.5e-115 417.5 290 70.3
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 9.5e-115 417.5 273 75.8
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 9.5e-115 417.5 265 76.6
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 1.6e-114 416.8 265 76.2
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 2.1e-114 416.4 265 77.0
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 2.1e-114 416.4 287 71.1
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 3.6e-114 415.6 265 77.0
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 3.6e-114 415.6 288 70.1
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 4.7e-114 415.2 297 67.7
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 1.1e-113 414.1 358 61.2
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 1.4e-113 413.7 290 70.3
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 2.3e-113 412.9 265 76.2
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 4.0e-113 412.1 289 69.2
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 5.2e-113 411.8 288 70.1
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 5.2e-113 411.8 291 70.8
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 6.8e-113 411.4 258 77.1
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 6.8e-113 411.4 265 74.3
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 6.8e-113 411.4 291 69.1
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 8.9e-113 411.0 294 68.7
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 8.9e-113 411.0 287 70.4
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 1.2e-112 410.6 285 69.8
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 2.6e-112 409.5 297 66.7
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 2.6e-112 409.5 285 71.9
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 2.6e-112 409.5 287 70.0
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 5.8e-112 408.3 271 74.2
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 1.3e-111 407.1 289 67.5
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 1.3e-111 407.1 264 74.2
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 2.9e-111 406.0 289 68.5
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 3.7e-111 405.6 267 75.3
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 3.7e-111 405.6 339 61.9
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 3.7e-111 405.6 265 72.1
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 3.7e-111 405.6 240 80.4
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 4.9e-111 405.2 279 70.3
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 6.4e-111 404.8 277 70.4
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 6.4e-111 404.8 289 68.5
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 8.3e-111 404.4 264 74.2
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 1.1e-110 404.1 275 71.6
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 1.9e-110 403.3 262 74.0
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 3.2e-110 402.5 281 70.1
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 3.2e-110 402.5 281 70.1
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 7.1e-110 401.4 270 73.0
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 9.2e-110 401.0 265 73.6
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 1.6e-109 400.2 265 74.0
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 1.6e-109 400.2 281 69.8
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 1.6e-109 400.2 281 69.8
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 1.6e-109 400.2 281 69.8
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 2.1e-109 399.8 259 77.2
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 1.7e-108 396.7 265 70.2
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 3.0e-108 396.0 294 66.7
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 3.0e-108 396.0 270 72.2
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 3.0e-108 396.0 288 67.4
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 5.1e-108 395.2 287 66.9
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 1.1e-107 394.0 268 72.0
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 1.9e-107 393.3 266 72.6
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 3.3e-107 392.5 287 66.9
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 4.3e-107 392.1 287 66.6
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 4.3e-107 392.1 284 68.0
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 5.6e-107 391.7 270 71.1
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 5.6e-107 391.7 269 71.4
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 1.1e-105 387.5 263 70.0
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 1.1e-105 387.5 289 65.7
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 2.4e-105 386.3 287 66.6
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 3.1e-105 386.0 243 74.1
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 3.1e-105 386.0 243 74.1
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 3.1e-105 386.0 315 62.9
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 6.8e-105 384.8 268 70.9
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 1.5e-104 383.6 265 68.3
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 1.7e-103 380.2 287 64.8
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 1.7e-103 380.2 265 67.9
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 9.2e-102 374.4 263 68.8
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 7.8e-101 371.3 252 69.4
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 9.6e-99 364.4 316 60.4
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 1.6e-98 363.6 295 64.7
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 6.2e-98 361.7 270 65.9
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 1.5e-96 357.1 219 79.0
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 1.7e-92 343.6 245 65.7
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 5.1e-92 342.0 267 61.4
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.3e-90 337.4 234 66.2
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 3.1e-89 332.8 277 63.2
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 3.4e-88 329.3 246 62.2
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 6.4e-87 325.1 252 66.3
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 7.9e-85 318.2 249 60.2
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 1.5e-83 313.9 270 58.1
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 4.8e-82 308.9 314 51.9
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 4.5e-80 302.4 265 54.7
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 8.4e-79 298.1 264 57.6
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 3.9e-76 289.3 240 57.5
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 2.5e-75 286.6 226 66.4
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 9.0e-73 278.1 270 52.2
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 8.2e-66 255.0 192 69.3
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 2.0e-59 233.8 203 61.6
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 1.2e-53 214.5 153 70.6
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 2.0e-51 207.2 143 73.4
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 9.7e-51 204.9 123 78.0
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 2.2e-50 203.8 248 44.8
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 1.1e-49 201.4 302 38.7
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 9.1e-49 198.4 242 45.0
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 1.2e-48 198.0 143 68.5
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 1.1e-46 191.4 239 43.5
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 2.0e-40 170.6 271 40.2
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 5.5e-38 162.5 136 59.6
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 1.0e-36 158.3 94 81.9
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 1.4e-36 157.9 99 78.8
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 5.2e-36 156.0 131 62.6
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 1.5e-35 154.5 99 76.8
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 2.6e-35 153.7 94 79.8
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 4.4e-35 152.9 131 61.8
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 3.7e-34 149.8 131 60.3
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 2.7e-32 143.7 97 78.4
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 3.4e-27 126.7 66 84.8
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 4.4e-27 126.3 278 33.5
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 2.9e-23 113.6 99 63.6
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 3.8e-23 113.2 133 48.9
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 2.8e-21 107.1 198 36.4
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 9.8e-19 98.6 68 67.6
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 4.5e-16 89.7 51 80.4
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 6.6e-15 85.9 248 25.8
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 2.5e-14 84.0 252 28.2
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 5.2e-12 76.3 41 85.4
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 8.9e-12 75.5 45 77.8
QL04p088979 Quercus lobata HOM05D003670 ORTHO05D004767 1.4e-09 68.2 64 54.7
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 3.0e-07 60.5 33 84.8
Cre01.g008891 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D031137 5.6e-06 56.2 58 41.4
Hma1.2p1_1039F.1_g250810 Hydrangea macrophylla HOM05D001854 ORTHO05D001800 7.3e-06 55.8 39 66.7


User provided reference genes

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