Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold49G18090 Striga asiatica HOM05D006042 ORTHO05D007658 2.0e-147 525.8 273 100.0
MSTRG.2747 Avicennia marina HOM05D006042 ORTHO05D007658 1.2e-94 350.5 258 73.3
Migut.H00201 Erythranthe guttata HOM05D006042 ORTHO05D007658 4.5e-91 338.6 260 71.9
Cfa007944 Carpinus fangiana HOM05D006042 ORTHO05D007658 1.7e-85 320.1 187 87.2
Oeu030760.1 Olea europaea HOM05D006042 ORTHO05D007658 1.1e-84 317.4 250 70.0
QL02p052540 Quercus lobata HOM05D006042 ORTHO05D007658 2.0e-83 313.2 185 86.5
CiPaw.03G059800 Carya illinoinensis HOM05D006042 ORTHO05D007658 2.7e-83 312.8 191 83.2
Cc07_g09000 Coffea canephora HOM05D006042 ORTHO05D007658 5.9e-83 311.6 250 68.4
Rhsim08G0079500 Rhododendron simsii HOM05D006042 ORTHO05D007658 1.3e-82 310.5 186 83.3
GSVIVG01036442001 Vitis vinifera HOM05D006042 ORTHO05D007658 2.9e-82 309.3 254 67.3
Aqoxy3G03922 Aquilegia oxysepala HOM05D006042 ORTHO05D007658 3.8e-82 308.9 184 84.8
SalBow3G2575 Salvia bowleyana HOM05D006042 ORTHO05D007658 5.0e-82 308.5 256 69.9
SalBow3G3727 Salvia bowleyana HOM05D006042 ORTHO05D007658 5.0e-82 308.5 256 69.9
Potri.004G102100 Populus trichocarpa HOM05D006042 ORTHO05D007658 6.6e-82 308.1 182 85.2
CSS0008868 Camellia sinensis var. sinensis HOM05D006042 ORTHO05D007658 8.6e-82 307.8 185 84.9
Hma1.2p1_0550F.1_g177265 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 8.6e-82 307.8 189 82.0
Atru.chr8.825 Acer truncatum HOM05D006042 ORTHO05D007658 1.1e-81 307.4 185 84.3
Prupe.3G239600 Prunus persica HOM05D006042 ORTHO05D007658 1.9e-81 306.6 191 83.2
Nitab4.5_0002489g0020 Nicotiana tabacum HOM05D006042 ORTHO05D007658 2.5e-81 306.2 191 81.7
Nitab4.5_0004721g0010 Nicotiana tabacum HOM05D006042 ORTHO05D007658 2.5e-81 306.2 189 82.5
Actinidia26288 Actinidia chinensis HOM05D006042 ORTHO05D007658 3.3e-81 305.8 250 66.0
Ciclev10012434m.g Citrus clementina HOM05D006042 ORTHO05D007658 3.3e-81 305.8 185 82.2
CAN.G995.2 Capsicum annuum HOM05D006042 ORTHO05D007658 4.2e-81 305.4 218 75.2
MBI09_g41181_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 4.2e-81 305.4 190 83.2
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 9.5e-81 304.3 219 72.1
PGSC0003DMG400019582 Solanum tuberosum HOM05D006042 ORTHO05D007658 1.2e-80 303.9 208 76.4
Manes.02G066700 Manihot esculenta HOM05D006042 ORTHO05D007658 1.6e-80 303.5 185 83.8
Eucgr.F02481 Eucalyptus grandis HOM05D006042 ORTHO05D007658 2.1e-80 303.1 185 82.7
Potri.017G112700 Populus trichocarpa HOM05D006042 ORTHO05D007658 2.8e-80 302.8 180 82.8
Sopen03g006950 Solanum pennellii HOM05D006042 ORTHO05D007658 2.8e-80 302.8 189 81.5
PSO063G0034 Papaver somniferum HOM05D006042 ORTHO05D007658 3.6e-80 302.4 188 81.4
Solyc03g034170.4 Solanum lycopersicum HOM05D006042 ORTHO05D007658 4.7e-80 302.0 189 81.5
ClCG11G005350 Citrullus lanatus HOM05D006042 ORTHO05D007658 6.1e-80 301.6 182 84.6
MD17G1074400 Malus domestica HOM05D006042 ORTHO05D007658 6.1e-80 301.6 190 81.6
arahy.Tifrunner.gnm1.ann1.TWH6SW Arachis hypogaea HOM05D006042 ORTHO05D007658 1.0e-79 300.8 188 78.7
MD09G1084900 Malus domestica HOM05D006042 ORTHO05D007658 1.0e-79 300.8 190 81.1
ATR0589G121 Amborella trichopoda HOM05D006042 ORTHO05D007658 1.4e-79 300.4 221 73.3
arahy.Tifrunner.gnm1.ann1.4I03R9 Arachis hypogaea HOM05D006042 ORTHO05D007658 1.8e-79 300.1 188 78.7
CARHR214100 Cardamine hirsuta HOM05D006042 ORTHO05D007658 1.8e-79 300.1 238 68.1
Thhalv10027870m.g Eutrema salsugineum HOM05D006042 ORTHO05D007658 1.8e-79 300.1 204 75.0
TWI53G1226 Tripterygium wilfordii HOM05D006042 ORTHO05D007658 5.2e-79 298.5 187 79.7
FAN14G4491 Fragaria x ananassa HOM05D006042 ORTHO05D007658 6.8e-79 298.1 172 85.5
Lj2g0022623 Lotus japonicus HOM05D006042 ORTHO05D007658 6.8e-79 298.1 186 79.0
Sp1g29720 Schrenkiella parvula HOM05D006042 ORTHO05D007658 6.8e-79 298.1 228 70.2
BcaC08g44400 Brassica carinata HOM05D006042 ORTHO05D007658 8.9e-79 297.7 204 75.5
Glyma.19G045600 Glycine max HOM05D006042 ORTHO05D007658 1.2e-78 297.4 170 84.1
PSO782G1563 Papaver somniferum HOM05D006042 ORTHO05D007658 1.2e-78 297.4 182 80.8
AL7G51880 Arabidopsis lyrata HOM05D006042 ORTHO05D007658 1.5e-78 297.0 240 67.1
Thecc.04G137400 Theobroma cacao HOM05D006042 ORTHO05D007658 1.5e-78 297.0 191 78.5
A07p19810 Brassica napus HOM05D006042 ORTHO05D007658 2.6e-78 296.2 244 66.8
Duzib138G1312 Durio zibethinus HOM05D006042 ORTHO05D007658 2.6e-78 296.2 196 76.5
C06p18330 Brassica napus HOM05D006042 ORTHO05D007658 4.4e-78 295.4 204 75.0
BolC6t37045H Brassica oleracea HOM05D006042 ORTHO05D007658 4.4e-78 295.4 204 75.0
CsaV3_5G039130 Cucumis sativus L. HOM05D006042 ORTHO05D007658 4.4e-78 295.4 237 69.6
Lalb_Chr06g0174661 Lupinus albus HOM05D006042 ORTHO05D007658 4.4e-78 295.4 177 80.8
FvH4_6g45340 Fragaria vesca HOM05D006042 ORTHO05D007658 5.7e-78 295.0 238 66.8
Gohir.D11G168732 Gossypium hirsutum HOM05D006042 ORTHO05D007658 5.7e-78 295.0 191 78.0
Gorai.007G180300 Gossypium raimondii HOM05D006042 ORTHO05D007658 5.7e-78 295.0 191 78.0
Zm00001eb042940 Zea mays HOM05D006042 ORTHO05D007658 5.7e-78 295.0 191 76.4
Gohir.A11G162500 Gossypium hirsutum HOM05D006042 ORTHO05D007658 7.5e-78 294.7 191 78.0
BraA07t29682Z Brassica rapa HOM05D006042 ORTHO05D007658 9.8e-78 294.3 244 66.4
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 1.3e-77 293.9 238 66.4
FAN09G0627 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.7e-77 293.5 237 67.1
THA.LOC104805550 Tarenaya hassleriana HOM05D006042 ORTHO05D007658 2.2e-77 293.1 215 71.2
CANSAT64G1085 Cannabis sativa HOM05D006042 ORTHO05D007658 2.8e-77 292.7 262 64.5
Carub.0007s3720 Capsella rubella HOM05D006042 ORTHO05D007658 2.8e-77 292.7 245 65.7
ECA232G3341 Erigeron canadensis HOM05D006042 ORTHO05D007658 2.8e-77 292.7 256 63.7
Phvul.004G063000 Phaseolus vulgaris HOM05D006042 ORTHO05D007658 2.8e-77 292.7 170 82.4
Hund16127 Selenicereus undatus HOM05D006042 ORTHO05D007658 3.7e-77 292.4 191 76.4
FAN05G0122 Fragaria x ananassa HOM05D006042 ORTHO05D007658 4.9e-77 292.0 199 74.9
HanXRQChr14g0438681 Helianthus annuus HOM05D006042 ORTHO05D007658 6.3e-77 291.6 261 62.1
VMungo0464G1707 Vigna mungo HOM05D006042 ORTHO05D007658 6.3e-77 291.6 218 66.5
Ca_26178_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 8.3e-77 291.2 163 86.5
Ca_30067_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 8.3e-77 291.2 163 86.5
Os08g0359000 Oryza sativa ssp. japonica HOM05D006042 ORTHO05D007658 1.1e-76 290.8 168 84.5
Sed0018352 Sechium edule HOM05D006042 ORTHO05D007658 1.1e-76 290.8 182 81.3
Sc10g0001330 Simmondsia chinensis HOM05D006042 ORTHO05D007658 2.4e-76 289.7 185 76.2
EL10Ac2g04605 Beta vulgaris HOM05D006042 ORTHO05D007658 3.2e-76 289.3 190 74.2
PGR004G1523 Punica granatum HOM05D006042 ORTHO05D007658 4.1e-76 288.9 187 78.1
Lsat_1_v5_gn_4_153081 Lactuca sativa HOM05D006042 ORTHO05D007658 7.0e-76 288.1 186 77.4
RcHm_v2.0_Chr2g0163121 Rosa chinensis HOM05D006042 ORTHO05D007658 7.0e-76 288.1 188 79.8
TPR.G32447 Trifolium pratense HOM05D006042 ORTHO05D007658 7.0e-76 288.1 187 78.1
Medtr6g017260 Medicago truncatula HOM05D006042 ORTHO05D007658 2.7e-75 286.2 247 66.4
vmacro18106 Vaccinium macrocarpon HOM05D006042 ORTHO05D007658 5.9e-75 285.0 164 86.6
BcaB02g07998 Brassica carinata HOM05D006042 ORTHO05D007658 7.8e-75 284.6 204 72.5
Psat1g013000 Pisum sativum HOM05D006042 ORTHO05D007658 1.3e-74 283.9 185 76.8
DCAR_009854 Daucus carota HOM05D006042 ORTHO05D007658 8.6e-74 281.2 242 63.6
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 1.5e-73 280.4 156 87.8
HPP92_008047 Vanilla planifolia HOM05D006042 ORTHO05D007658 1.5e-73 280.4 186 76.3
Dinv34847 Davidia involucrata HOM05D006042 ORTHO05D007658 2.8e-72 276.2 186 78.5
FAN02G0945 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.8e-71 273.5 199 72.4
AUR62014538 Chenopodium quinoa HOM05D006042 ORTHO05D007658 8.9e-71 271.2 152 83.6
AUR62008965 Chenopodium quinoa HOM05D006042 ORTHO05D007658 4.4e-70 268.9 152 82.2
Hma1.2p1_0550F.1_g177260 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 2.9e-69 266.2 163 82.8
SEGI_07967 Sequoiadendron giganteum HOM05D006042 ORTHO05D007658 5.4e-68 261.9 189 70.9
Aa31LG9G16960 Aethionema arabicum HOM05D006042 ORTHO05D007658 8.6e-66 254.6 204 67.2
Mapoly0019s0052 Marchantia polymorpha HOM05D006042 ORTHO05D007658 1.6e-64 250.4 183 68.9
SMO232G0004 Selaginella moellendorffii HOM05D006042 ORTHO05D007658 1.6e-64 250.4 187 68.4
Sabra04G0078300 Salix brachista HOM05D006042 ORTHO05D007658 2.3e-63 246.5 275 54.5
AagrBONN_evm.TU.Sc2ySwM_340.223 Anthoceros agrestis HOM05D000513 ORTHO05D003825 2.6e-62 243.0 160 73.8
Nn3g17761 Nelumbo nucifera HOM05D006042 ORTHO05D007658 1.1e-60 237.7 183 69.9
CBR_g44937 Chara braunii HOM05D006042 ORTHO05D007658 1.0e-58 231.1 162 67.9
MELO3C022088.2 Cucumis melo HOM05D006042 ORTHO05D007658 2.3e-58 229.9 211 62.6
Pp3c4_3720 Physcomitrium patens HOM05D006042 ORTHO05D007658 2.3e-58 229.9 191 64.4
CDE09G0042 Ceratophyllum demersum HOM05D006042 ORTHO05D007658 1.9e-57 226.9 187 65.2
Peaxi162Scf00751g00624 Petunia axillaris HOM05D006042 ORTHO05D007658 3.7e-53 212.6 121 83.5
MBI09_g40289_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 1.6e-51 207.2 207 58.9
TAR278G0002 Trochodendron aralioides HOM05D006042 ORTHO05D007658 1.3e-42 177.6 182 58.2
BolC3t18613H Brassica oleracea HOM05D006042 ORTHO05D032368 1.3e-40 171.0 97 85.6
BcaC02g09662 Brassica carinata HOM05D006042 ORTHO05D007658 2.8e-40 169.9 176 59.1
Cpa.g.sc179.22 Carica papaya HOM05D006042 ORTHO05D007658 4.8e-40 169.1 185 53.0
BolC5t30891H Brassica oleracea HOM05D006042 ORTHO05D007658 8.1e-40 168.3 97 84.5
MCO16G088 Micromonas commoda HOM05D006042 ORTHO05D007658 5.3e-39 165.6 171 49.1
PRCOL_00000779 Prasinoderma coloniale HOM05D006042 ORTHO05D007658 7.6e-38 161.8 191 44.5
Cre16.g665250 Chlamydomonas reinhardtii HOM05D006042 ORTHO05D007658 1.3e-37 161.0 173 52.0
Haze_14131 Corylus avellana HOM05D006042 ORTHO05D007658 3.2e-36 156.4 119 72.3
unitig_0.g9 Utricularia gibba HOM05D006042 ORTHO05D007658 3.0e-34 149.8 115 68.7
Cpa.g.sc179.23 Carica papaya HOM05D006042 ORTHO05D007658 1.6e-32 144.1 78 87.2
GSVIVG01026074001 Vitis vinifera HOM05D006042 ORTHO05D007658 1.8e-31 140.6 104 70.2
BolC4t26112H Brassica oleracea HOM05D006042 ORTHO05D007658 9.0e-31 138.3 246 41.5
GSVIVG01027526001 Vitis vinifera HOM05D006042 ORTHO05D007658 3.2e-28 129.8 78 80.8
C04p45290 Brassica napus HOM05D006042 ORTHO05D007658 1.6e-27 127.5 278 37.8
Sabra17G0093400 Salix brachista HOM05D006042 ORTHO05D007658 1.6e-19 100.9 79 70.9
CARHR262580 Cardamine hirsuta HOM05D006042 ORTHO05D007658 3.9e-18 96.3 145 49.0
BcaC05g29172 Brassica carinata HOM05D006042 ORTHO05D032368 8.2e-16 88.6 50 84.0
C02p54890 Brassica napus HOM05D006042 ORTHO05D032368 1.1e-15 88.2 51 82.4
Haze_14130 Corylus avellana HOM05D006042 ORTHO05D007658 2.6e-14 83.6 100 53.0
Phvul.004G063400 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 7.6e-14 82.0 55 70.9
Peaxi162Scf00104g00074 Petunia axillaris HOM05D006042 ORTHO05D007658 6.5e-13 79.0 52 73.1
Phvul.004G063200 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 1.4e-12 77.8 47 74.5
VMungo0464G0819 Vigna mungo HOM05D006042 ORTHO05D007658 5.7e-09 65.9 47 66.0
unitig_0.g10 Utricularia gibba HOM05D006042 ORTHO05D007658 2.2e-08 63.9 54 66.7


User provided reference genes

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