Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 1.8e-108 396.0 206 100.0
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 2.2e-69 266.2 247 64.0
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 9.8e-30 134.4 244 41.4
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 2.8e-29 132.9 239 41.8
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 5.9e-27 125.2 218 43.1
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.3e-26 124.0 262 38.9
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 2.9e-26 122.9 254 39.4
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 1.9e-25 120.2 255 38.8
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 7.3e-25 118.2 267 38.2
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 1.2e-24 117.5 249 39.0
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 3.6e-24 115.9 248 38.7
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 4.7e-24 115.5 258 39.1
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 8.9e-23 111.3 221 38.9
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 8.9e-23 111.3 221 38.9
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 8.9e-23 111.3 238 40.3
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 1.2e-22 110.9 222 41.0
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 1.5e-22 110.5 157 46.5
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 2.0e-22 110.2 223 42.2
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 2.6e-22 109.8 223 43.5
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 3.4e-22 109.4 232 38.4
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 9.8e-22 107.8 252 37.3
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 1.3e-21 107.5 245 36.7
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 2.9e-21 106.3 212 42.0
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 2.9e-21 106.3 233 39.9
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 2.9e-21 106.3 158 47.5
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 2.9e-21 106.3 230 38.3
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 3.7e-21 105.9 184 41.8
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 6.4e-21 105.1 185 45.4
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 8.3e-21 104.8 226 39.4
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 8.3e-21 104.8 229 39.3
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 1.8e-20 103.6 77 63.6
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 1.8e-20 103.6 234 38.9
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 1.8e-20 103.6 238 39.1
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 2.4e-20 103.2 158 45.6
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 3.2e-20 102.8 136 52.2
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 3.2e-20 102.8 254 36.2
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 3.2e-20 102.8 245 38.8
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 4.1e-20 102.4 236 37.3
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 5.4e-20 102.1 198 40.9
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 5.4e-20 102.1 236 37.7
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 5.4e-20 102.1 237 38.0
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 7.0e-20 101.7 195 41.5
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 9.2e-20 101.3 236 39.8
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 1.2e-19 100.9 78 64.1
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 1.2e-19 100.9 78 64.1
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 1.2e-19 100.9 237 37.1
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 2.0e-19 100.1 237 37.6
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 2.7e-19 99.8 222 36.5
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 3.5e-19 99.4 77 63.6
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 3.5e-19 99.4 77 63.6
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 3.5e-19 99.4 79 59.5
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 4.6e-19 99.0 78 61.5
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 4.6e-19 99.0 78 61.5
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 4.6e-19 99.0 150 44.7
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 4.6e-19 99.0 80 62.5
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 4.6e-19 99.0 205 40.0
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 6.0e-19 98.6 239 37.2
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 6.0e-19 98.6 235 38.3
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 6.0e-19 98.6 157 43.9
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 6.0e-19 98.6 209 39.2
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 7.8e-19 98.2 70 67.1
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 7.8e-19 98.2 79 62.0
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 7.8e-19 98.2 150 44.7
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 7.8e-19 98.2 229 38.0
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.0e-18 97.8 227 38.3
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 1.0e-18 97.8 223 38.1
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 1.0e-18 97.8 237 35.9
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 1.0e-18 97.8 80 63.8
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 1.3e-18 97.4 75 64.0
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 1.3e-18 97.4 213 38.5
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 1.7e-18 97.1 78 61.5
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 1.7e-18 97.1 77 63.6
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.7e-18 97.1 80 61.2
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.7e-18 97.1 80 61.2
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 1.7e-18 97.1 250 34.4
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 1.7e-18 97.1 136 43.4
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.3e-18 96.7 68 70.6
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 3.0e-18 96.3 171 43.3
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 3.0e-18 96.3 237 36.3
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 3.9e-18 95.9 159 39.6
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 5.0e-18 95.5 186 43.0
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 5.0e-18 95.5 185 41.1
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 5.0e-18 95.5 116 50.0
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 6.6e-18 95.1 79 62.0
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 6.6e-18 95.1 79 60.8
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 6.6e-18 95.1 189 41.8
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 8.6e-18 94.7 217 37.3
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 8.6e-18 94.7 172 41.9
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 1.1e-17 94.4 225 36.0
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 1.5e-17 94.0 75 61.3
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 1.5e-17 94.0 234 35.0
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 1.5e-17 94.0 243 35.8
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 1.5e-17 94.0 244 38.1
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 1.9e-17 93.6 112 42.0
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 1.9e-17 93.6 237 35.4
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 1.9e-17 93.6 176 39.8
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 2.5e-17 93.2 224 33.5
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 2.5e-17 93.2 77 58.4
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 2.5e-17 93.2 237 33.8
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 3.3e-17 92.8 80 55.0
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 3.3e-17 92.8 235 37.4
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 3.3e-17 92.8 221 38.9
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 4.3e-17 92.4 116 50.9
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 5.6e-17 92.0 209 35.4
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 5.6e-17 92.0 144 39.6
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 5.6e-17 92.0 215 38.1
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 7.3e-17 91.7 71 59.2
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 7.3e-17 91.7 240 35.0
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 7.3e-17 91.7 227 37.9
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 9.5e-17 91.3 233 36.1
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 1.2e-16 90.9 80 58.8
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 2.1e-16 90.1 192 35.9
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 2.1e-16 90.1 198 36.4
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 2.1e-16 90.1 198 36.4
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 2.1e-16 90.1 225 34.7
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 2.1e-16 90.1 238 34.5
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 2.1e-16 90.1 192 40.1
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 2.8e-16 89.7 193 36.8
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 2.8e-16 89.7 227 37.4
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 3.6e-16 89.4 192 40.1
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 3.6e-16 89.4 227 37.0
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 4.7e-16 89.0 184 39.7
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 4.7e-16 89.0 200 36.5
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 6.2e-16 88.6 192 35.4
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 6.2e-16 88.6 201 34.8
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 6.2e-16 88.6 239 34.7
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 6.2e-16 88.6 242 37.2
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.1e-15 87.8 178 40.4
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.4e-15 87.4 213 37.6
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 1.4e-15 87.4 231 35.9
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 1.8e-15 87.0 180 40.6
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 2.3e-15 86.7 202 37.6
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 3.1e-15 86.3 131 42.0
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 5.2e-15 85.5 214 36.4
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 6.8e-15 85.1 216 31.5
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 6.8e-15 85.1 216 31.5
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 6.8e-15 85.1 226 30.5
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 1.2e-14 84.3 209 34.9
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 1.2e-14 84.3 202 34.2
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 1.2e-14 84.3 202 34.2
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 1.2e-14 84.3 229 36.7
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 3.4e-14 82.8 155 38.7
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 3.4e-14 82.8 215 33.5
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 5.8e-14 82.0 244 30.7
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 9.8e-14 81.3 203 35.0
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 9.8e-14 81.3 203 35.0
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 1.7e-13 80.5 218 36.2
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 3.7e-13 79.3 201 34.8
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 6.4e-13 78.6 208 37.0
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 8.3e-13 78.2 216 30.6
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 2.4e-12 76.6 216 30.6
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 1.2e-11 74.3 55 63.6
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 4.6e-11 72.4 258 32.2
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 1.0e-10 71.2 66 56.1
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 1.3e-10 70.9 240 35.0
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 1.9e-09 67.0 178 33.1
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 2.5e-09 66.6 101 43.6
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 9.5e-09 64.7 45 62.2
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 3.6e-08 62.8 50 58.0


User provided reference genes

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