Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold499G52489 Striga asiatica HOM05D006133 ORTHO05D007855 8.9e-94 347.1 190 100.0
SGA_v2.0_scaffold22G09717 Striga asiatica HOM05D006133 ORTHO05D007855 1.9e-35 153.3 205 51.2
Migut.M01145 Erythranthe guttata HOM05D006133 ORTHO05D007855 4.1e-30 135.6 201 46.8
Actinidia05630 Actinidia chinensis HOM05D006133 ORTHO05D007855 1.5e-24 117.1 201 42.3
Lj1A1206T67 Lonicera japonica HOM05D006133 ORTHO05D007855 9.7e-24 114.4 202 40.6
unitig_22.g6229 Utricularia gibba HOM05D006133 ORTHO05D007855 3.7e-23 112.5 173 45.7
Hma1.2p1_0785F.1_g217580 Hydrangea macrophylla HOM05D006133 ORTHO05D007855 6.3e-23 111.7 207 39.1
CSS0047692 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 1.4e-22 110.5 201 42.3
TWI38G1277 Tripterygium wilfordii HOM05D006133 ORTHO05D007855 1.4e-22 110.5 166 47.0
Atru.chr10.1894 Acer truncatum HOM05D006133 ORTHO05D007855 9.0e-22 107.8 197 42.6
Cc02_g13300 Coffea canephora HOM05D006133 ORTHO05D007855 9.0e-22 107.8 201 38.3
ECA234G2723 Erigeron canadensis HOM05D006133 ORTHO05D007855 9.0e-22 107.8 200 39.5
Dinv40551 Davidia involucrata HOM05D006133 ORTHO05D007855 3.4e-21 105.9 200 38.0
QL05p040164 Quercus lobata HOM05D006133 ORTHO05D007855 3.4e-21 105.9 196 40.8
Nitab4.5_0007940g0050 Nicotiana tabacum HOM05D006133 ORTHO05D007855 5.9e-21 105.1 189 41.8
Nitab4.5_0003432g0010 Nicotiana tabacum HOM05D006133 ORTHO05D007855 1.3e-20 104.0 182 41.8
CiPaw.09G059200 Carya illinoinensis HOM05D006133 ORTHO05D007855 2.9e-20 102.8 186 41.9
Manes.16G026900 Manihot esculenta HOM05D006133 ORTHO05D007855 2.9e-20 102.8 206 38.8
Oeu057904.1 Olea europaea HOM05D006133 ORTHO05D007855 2.9e-20 102.8 201 40.3
Cpa.g.sc27.45 Carica papaya HOM05D006133 ORTHO05D007855 5.0e-20 102.1 183 41.5
Gorai.011G027600 Gossypium raimondii HOM05D006133 ORTHO05D007855 5.0e-20 102.1 184 40.2
AUR62017011 Chenopodium quinoa HOM05D006133 ORTHO05D007855 6.5e-20 101.7 200 38.0
Haze_06477 Corylus avellana HOM05D006133 ORTHO05D007855 6.5e-20 101.7 186 40.9
CSS0042278 Camellia sinensis var. sinensis HOM05D006133 ORTHO05D007855 1.1e-19 100.9 201 38.3
Glyma.13G179800 Glycine max HOM05D006133 ORTHO05D007855 1.1e-19 100.9 203 37.9
Thecc.06G188500 Theobroma cacao HOM05D006133 ORTHO05D007855 1.1e-19 100.9 184 40.8
Cfa000437 Carpinus fangiana HOM05D006133 ORTHO05D007855 5.5e-19 98.6 201 39.8
COL.COLO4_31481 Corchorus olitorius HOM05D006133 ORTHO05D007855 5.5e-19 98.6 198 38.9
Potri.004G042800 Populus trichocarpa HOM05D006133 ORTHO05D007855 5.5e-19 98.6 206 38.8
TAR628G0719 Trochodendron aralioides HOM05D006133 ORTHO05D007855 7.2e-19 98.2 200 40.5
MBI09_g12165_MAGBIO Magnolia biondii HOM05D006133 ORTHO05D007855 1.2e-18 97.4 191 40.8
Peaxi162Scf00736g00427 Petunia axillaris HOM05D006133 ORTHO05D007855 1.6e-18 97.1 212 37.7
Gohir.A10G025600 Gossypium hirsutum HOM05D006133 ORTHO05D007855 2.1e-18 96.7 184 38.6
Sc05g0007700 Simmondsia chinensis HOM05D006133 ORTHO05D007855 2.7e-18 96.3 201 37.3
Nn1g08778 Nelumbo nucifera HOM05D006133 ORTHO05D007855 3.6e-18 95.9 180 42.2
HanXRQChr16g0517711 Helianthus annuus HOM05D006133 ORTHO05D007855 4.6e-18 95.5 192 38.0
AUR62014816 Chenopodium quinoa HOM05D006133 ORTHO05D007855 7.9e-18 94.7 200 36.5
Hund23730 Selenicereus undatus HOM05D006133 ORTHO05D007855 1.8e-17 93.6 201 36.3
Hund23731 Selenicereus undatus HOM05D006133 ORTHO05D007855 1.8e-17 93.6 201 36.3
Glyma.07G196100 Glycine max HOM05D006133 ORTHO05D007855 5.1e-17 92.0 203 36.5
arahy.Tifrunner.gnm1.ann1.Y5A5WX Arachis hypogaea HOM05D006133 ORTHO05D007855 1.5e-16 90.5 204 36.8
Potri.011G051900 Populus trichocarpa HOM05D006133 ORTHO05D007855 1.5e-16 90.5 206 36.9
FvH4_3g09320 Fragaria vesca HOM05D006133 ORTHO05D007855 4.3e-16 89.0 199 36.7
Lj4g0021405 Lotus japonicus HOM05D006133 ORTHO05D007855 4.3e-16 89.0 183 37.2
Sp4g16180 Schrenkiella parvula HOM05D006133 ORTHO05D007855 5.7e-16 88.6 207 36.2
Medtr4g088855 Medicago truncatula HOM05D006133 ORTHO05D007855 9.7e-16 87.8 194 36.1
Prupe.4G046300 Prunus persica HOM05D006133 ORTHO05D007855 9.7e-16 87.8 197 36.0
ClCG03G006010 Citrullus lanatus HOM05D006133 ORTHO05D007855 1.3e-15 87.4 172 38.4
RcHm_v2.0_Chr5g0008281 Rosa chinensis HOM05D006133 ORTHO05D007855 1.3e-15 87.4 199 36.7
Phvul.002G234200 Phaseolus vulgaris HOM05D006133 ORTHO05D007855 1.7e-15 87.0 203 35.5
AL4G29540 Arabidopsis lyrata HOM05D006133 ORTHO05D007855 2.2e-15 86.7 182 38.5
Cc01_g03530 Coffea canephora HOM05D006133 ORTHO05D007855 2.2e-15 86.7 168 39.3
Lsat_1_v5_gn_4_52940 Lactuca sativa HOM05D006133 ORTHO05D007855 2.2e-15 86.7 192 36.5
Carub.0004s1546 Capsella rubella HOM05D006133 ORTHO05D007855 2.8e-15 86.3 200 36.0
MELO3C002599.2 Cucumis melo HOM05D006133 ORTHO05D007855 2.8e-15 86.3 172 37.8
CsaV3_1G012270 Cucumis sativus L. HOM05D006133 ORTHO05D007855 2.8e-15 86.3 172 37.8
PSO478G5317 Papaver somniferum HOM05D006133 ORTHO05D007855 8.2e-15 84.7 198 36.9
CAN.G1164.26 Capsicum annuum HOM05D006133 ORTHO05D007855 1.4e-14 84.0 202 36.1
FAN16G1924 Fragaria x ananassa HOM05D006133 ORTHO05D007855 1.4e-14 84.0 220 32.3
CARHR127900 Cardamine hirsuta HOM05D006133 ORTHO05D007855 1.8e-14 83.6 182 36.3
Duzib235G0895 Durio zibethinus HOM05D006133 ORTHO05D007855 1.8e-14 83.6 168 38.1
TPR.G12027 Trifolium pratense HOM05D006133 ORTHO05D007855 2.4e-14 83.2 172 38.4
VMungo0251G0712 Vigna mungo HOM05D006133 ORTHO05D007855 2.4e-14 83.2 172 38.4
arahy.Tifrunner.gnm1.ann1.YAJ938 Arachis hypogaea HOM05D006133 ORTHO05D007855 3.1e-14 82.8 216 34.7
PSO478G1675 Papaver somniferum HOM05D006133 ORTHO05D007855 3.1e-14 82.8 198 36.4
THA.LOC104814218 Tarenaya hassleriana HOM05D006133 ORTHO05D007855 6.9e-14 81.6 204 34.8
Sopen02g023140 Solanum pennellii HOM05D006133 ORTHO05D007855 9.1e-14 81.3 195 35.9
Psat7g113640 Pisum sativum HOM05D006133 ORTHO05D007855 1.5e-13 80.5 197 33.5
PGSC0003DMG400029689 Solanum tuberosum HOM05D006133 ORTHO05D007855 1.5e-13 80.5 201 35.8
ATR0584G083 Amborella trichopoda HOM05D006133 ORTHO05D007855 2.6e-13 79.7 179 38.0
Ca_18541_v3 Cicer arietinum L. HOM05D006133 ORTHO05D007855 7.7e-13 78.2 172 36.6
Dinv07556 Davidia involucrata HOM05D006133 ORTHO05D007855 7.7e-13 78.2 120 43.3
BcaC02g07769 Brassica carinata HOM05D006133 ORTHO05D007855 1.0e-12 77.8 207 33.8
Ah.09g237330 Amaranthus hybridus HOM05D006133 ORTHO05D007855 1.7e-12 77.0 215 32.6
BolC4t27810H Brassica oleracea HOM05D006133 ORTHO05D007855 2.2e-12 76.6 207 33.3
Solyc02g078290.4 Solanum lycopersicum HOM05D006133 ORTHO05D007855 4.2e-11 72.4 113 42.5
AT2G33793 Arabidopsis thaliana HOM05D006133 ORTHO05D007855 7.2e-11 71.6 214 32.2
Cc01_g03500 Coffea canephora HOM05D006133 ORTHO05D007855 9.4e-11 71.2 205 32.7
PGR004G1018 Punica granatum HOM05D006133 ORTHO05D007855 1.2e-10 70.9 197 33.0
Gohir.D10G026300 Gossypium hirsutum HOM05D006133 ORTHO05D007855 2.1e-10 70.1 106 45.3
Rhsim13G0177600 Rhododendron simsii HOM05D006133 ORTHO05D007855 4.7e-10 68.9 244 30.3
GSVIVG01033625001 Vitis vinifera HOM05D006133 ORTHO05D007855 7.9e-10 68.2 173 35.8
Solyc02g078280.3 Solanum lycopersicum HOM05D006133 ORTHO05D007855 1.8e-09 67.0 169 36.1
CANSAT35G1333 Cannabis sativa HOM05D006133 ORTHO05D007855 2.3e-09 66.6 172 34.9
Sabra11G0035700 Salix brachista HOM05D006133 ORTHO05D007855 3.0e-09 66.2 206 32.5
BraA04t18104Z Brassica rapa HOM05D006133 ORTHO05D007855 3.9e-09 65.9 163 33.7
Thhalv10017234m.g Eutrema salsugineum HOM05D006133 ORTHO05D007855 3.9e-09 65.9 207 31.4
MD05G1313300 Malus domestica HOM05D006133 ORTHO05D007855 1.5e-08 63.9 130 38.5
DCAR_028075 Daucus carota HOM05D006133 ORTHO05D007855 2.0e-08 63.5 145 35.9
FAN11G1298 Fragaria x ananassa HOM05D006133 ORTHO05D007855 3.3e-08 62.8 152 34.2
C04p15330 Brassica napus HOM05D006133 ORTHO05D007855 4.4e-08 62.4 164 34.1
Sed0025328 Sechium edule HOM05D006133 ORTHO05D007855 1.3e-07 60.8 113 38.9
Zm00001eb063880 Zea mays HOM05D006133 ORTHO05D007855 1.3e-07 60.8 186 32.3
BolC4t23106H Brassica oleracea HOM05D006133 ORTHO05D007855 6.3e-07 58.5 205 30.2
Ciclev10017918m.g Citrus clementina HOM05D006133 ORTHO05D007855 8.2e-07 58.2 144 34.7
FAN25G2154 Fragaria x ananassa HOM05D006133 ORTHO05D007855 8.2e-07 58.2 146 33.6
AagrBONN_evm.TU.Sc2ySwM_228.202 Anthoceros agrestis HOM05D006133 ORTHO05D007855 1.1e-06 57.8 177 30.5
C04p63360 Brassica napus HOM05D006133 ORTHO05D007855 1.4e-06 57.4 193 29.5
Os03g0837800 Oryza sativa ssp. japonica HOM05D006133 ORTHO05D007855 1.8e-06 57.0 197 31.0
HPP92_006840 Vanilla planifolia HOM05D006133 ORTHO05D007855 1.8e-06 57.0 87 42.5
BcaC02g11457 Brassica carinata HOM05D006133 ORTHO05D007855 3.1e-06 56.2 154 33.1
Gohir.A01G166500 Gossypium hirsutum HOM05D006133 ORTHO05D007855 3.1e-06 56.2 60 50.0
FAN21G1061 Fragaria x ananassa HOM05D006133 ORTHO05D007855 4.1e-06 55.8 145 33.1
Prupe.4G042300 Prunus persica HOM05D006133 ORTHO05D007855 4.1e-06 55.8 69 47.8


User provided reference genes

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