Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold495G52461 Striga asiatica HOM05D002727 ORTHO05D002856 2.8e-70 268.5 135 100.0
SGA_v2.0_scaffold170G38831 Striga asiatica HOM05D002727 ORTHO05D002856 1.7e-43 179.5 115 82.6
SGA_v2.0_scaffold180G39653 Striga asiatica HOM05D000089 ORTHO05D000104 1.4e-37 159.8 113 76.1
SGA_v2.0_scaffold122G33196 Striga asiatica HOM05D002727 ORTHO05D002856 6.0e-36 154.5 94 84.0
SGA_v2.0_scaffold52G19078 Striga asiatica HOM05D002727 ORTHO05D002856 6.0e-36 154.5 113 77.0
SGA_v2.0_scaffold44G16740 Striga asiatica HOM05D002727 ORTHO05D002856 1.5e-31 139.8 91 83.5
SGA_v2.0_scaffold190G40405 Striga asiatica HOM05D002727 ORTHO05D002856 2.2e-30 136.0 102 73.5
Migut.E00413 Erythranthe guttata HOM05D002727 ORTHO05D002856 1.1e-29 133.7 118 61.9
SGA_v2.0_scaffold85G26696 Striga asiatica HOM05D002727 ORTHO05D002856 5.4e-29 131.3 88 80.7
SGA_v2.0_scaffold172G38950 Striga asiatica HOM05D002727 ORTHO05D002856 8.7e-27 124.0 77 83.1
SGA_v2.0_scaffold76G25158 Striga asiatica HOM05D002727 ORTHO05D002856 1.9e-26 122.9 83 80.7
SGA_v2.0_scaffold192G40538 Striga asiatica HOM05D001081 ORTHO05D004708 2.0e-23 112.8 81 75.3
Oeu044348.1 Olea europaea HOM05D002727 ORTHO05D002856 6.4e-22 107.8 114 56.1
SGA_v2.0_scaffold668G53415 Striga asiatica HOM05D002727 ORTHO05D002856 8.4e-22 107.5 72 80.6
unitig_27.g25263 Utricularia gibba HOM05D002727 ORTHO05D002856 7.1e-21 104.4 113 51.3
Solyc05g008320.1 Solanum lycopersicum HOM05D002727 ORTHO05D002856 1.6e-20 103.2 112 53.6
Sopen05g004150 Solanum pennellii HOM05D002727 ORTHO05D002856 1.6e-20 103.2 112 53.6
PGSC0003DMG400030506 Solanum tuberosum HOM05D002727 ORTHO05D002856 1.6e-20 103.2 112 53.6
Nitab4.5_0006134g0020 Nicotiana tabacum HOM05D002727 ORTHO05D002856 1.3e-19 100.1 112 53.6
CAN.G185.21 Capsicum annuum HOM05D002727 ORTHO05D002856 6.7e-19 97.8 109 54.1
SGA_v2.0_scaffold10G05490 Striga asiatica HOM05D002727 ORTHO05D002856 4.0e-16 88.6 64 75.0
Peaxi162Scf00205g00023 Petunia axillaris HOM05D002727 ORTHO05D002856 6.9e-16 87.8 99 51.5
unitig_26.g9074 Utricularia gibba HOM05D002727 ORTHO05D002856 2.6e-15 85.9 106 48.1
Lsat_1_v5_gn_8_43200 Lactuca sativa HOM05D002727 ORTHO05D002856 9.9e-15 84.0 99 48.5
HanXRQChr08g0212641 Helianthus annuus HOM05D002727 ORTHO05D002856 6.4e-14 81.3 110 43.6
TAR622G1289 Trochodendron aralioides HOM05D002727 ORTHO05D002856 1.9e-13 79.7 112 41.1
Rhsim09G0100100 Rhododendron simsii HOM05D008460 ORTHO05D001602 2.4e-13 79.3 97 47.4
MELO3C012299.2 Cucumis melo HOM05D002727 ORTHO05D002856 7.1e-13 77.8 97 46.4
unitig_26.g9076 Utricularia gibba HOM05D002727 ORTHO05D002856 7.1e-13 77.8 109 45.9
Hma1.2p1_0951F.1_g240760 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 1.6e-12 76.6 98 46.9
Hma1.2p1_2764F.1_g328145 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 1.6e-12 76.6 98 46.9
Atru.chr11.374 Acer truncatum HOM05D002727 ORTHO05D002856 6.0e-12 74.7 95 49.5
CsaV3_5G034890 Cucumis sativus L. HOM05D002727 ORTHO05D002856 6.0e-12 74.7 97 45.4
CSS0022209 Camellia sinensis var. sinensis HOM05D002727 ORTHO05D002856 7.9e-12 74.3 123 37.4
vmacro10627 Vaccinium macrocarpon HOM05D002727 ORTHO05D002856 7.9e-12 74.3 97 42.3
Hma1.2p1_0114F.1_g055280 Hydrangea macrophylla HOM05D002727 ORTHO05D002856 1.0e-11 73.9 97 44.3
Duzib251G0433 Durio zibethinus HOM05D002727 ORTHO05D002856 2.3e-11 72.8 115 40.9
Atru.chr11.406 Acer truncatum HOM05D002727 ORTHO05D002856 3.9e-11 72.0 105 40.0
FAN12G1004 Fragaria x ananassa HOM05D002727 ORTHO05D002856 3.9e-11 72.0 112 42.0
FAN22G0940 Fragaria x ananassa HOM05D002727 ORTHO05D002856 3.9e-11 72.0 112 42.0
arahy.Tifrunner.gnm1.ann1.NZR7KS Arachis hypogaea HOM05D002727 ORTHO05D002856 5.1e-11 71.6 112 38.4
ECA232G4731 Erigeron canadensis HOM05D002727 ORTHO05D002856 5.1e-11 71.6 100 43.0
FvH4_4g32150 Fragaria vesca HOM05D002727 ORTHO05D002856 5.1e-11 71.6 112 42.0
Lsat_1_v5_gn_3_54560 Lactuca sativa HOM05D002727 ORTHO05D002856 5.1e-11 71.6 120 36.7
Lj5g0017764 Lotus japonicus HOM05D002727 ORTHO05D002856 5.1e-11 71.6 109 42.2
Nn3g16463 Nelumbo nucifera HOM05D002727 ORTHO05D002856 5.1e-11 71.6 113 38.1
Potri.008G127500 Populus trichocarpa HOM05D002727 ORTHO05D002856 5.1e-11 71.6 100 42.0
Actinidia36683 Actinidia chinensis HOM05D002727 ORTHO05D002856 6.7e-11 71.2 95 46.3
Dinv16190 Davidia involucrata HOM05D002727 ORTHO05D002856 6.7e-11 71.2 101 42.6
Thecc.02G279300 Theobroma cacao HOM05D002727 ORTHO05D002856 6.7e-11 71.2 99 44.4
Actinidia15249 Actinidia chinensis HOM05D002727 ORTHO05D002856 8.7e-11 70.9 95 45.3
PSO478G1911 Papaver somniferum HOM05D002727 ORTHO05D002856 8.7e-11 70.9 116 40.5
ClCG05G022230 Citrullus lanatus HOM05D002727 ORTHO05D002856 1.1e-10 70.5 97 45.4
Ciclev10017676m.g Citrus clementina HOM05D002727 ORTHO05D002856 1.5e-10 70.1 101 43.6
DCAR_023615 Daucus carota HOM05D002727 ORTHO05D002856 1.5e-10 70.1 114 37.7
VMungo0720G2475 Vigna mungo HOM05D002727 ORTHO05D002856 1.5e-10 70.1 109 38.5
Ciclev10017720m.g Citrus clementina HOM05D002727 ORTHO05D002856 1.9e-10 69.7 110 40.9
MD16G1031100 Malus domestica HOM05D002727 ORTHO05D002856 1.9e-10 69.7 107 43.9
Prupe.1G322000 Prunus persica HOM05D002727 ORTHO05D002856 3.3e-10 68.9 102 42.2
arahy.Tifrunner.gnm1.ann1.E5JI7C Arachis hypogaea HOM05D002727 ORTHO05D002856 4.3e-10 68.6 112 37.5
DCAR_007283 Daucus carota HOM05D002727 ORTHO05D002856 4.3e-10 68.6 96 40.6
HanXRQChr15g0488631 Helianthus annuus HOM05D002727 ORTHO05D002856 4.3e-10 68.6 91 47.3
MD13G1028200 Malus domestica HOM05D002727 ORTHO05D002856 4.3e-10 68.6 102 45.1
PSO017G6820 Papaver somniferum HOM05D002727 ORTHO05D002856 4.3e-10 68.6 114 38.6
Sabra08G0096800 Salix brachista HOM05D002727 ORTHO05D002856 4.3e-10 68.6 99 41.4
ECA233G4969 Erigeron canadensis HOM05D002727 ORTHO05D002856 5.6e-10 68.2 100 42.0
PSO478G1097 Papaver somniferum HOM05D002727 ORTHO05D002856 5.6e-10 68.2 114 38.6
Glyma.10G265700 Glycine max HOM05D002727 ORTHO05D002856 7.4e-10 67.8 109 37.6
Thecc.02G278300 Theobroma cacao HOM05D002727 ORTHO05D002856 7.4e-10 67.8 105 39.0
MELO3C005314.2 Cucumis melo HOM05D002727 ORTHO05D002856 9.6e-10 67.4 102 39.2
Sabra08G0096300 Salix brachista HOM05D002727 ORTHO05D002856 9.6e-10 67.4 92 43.5
FAN07G1376 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.3e-09 67.0 112 40.2
Lalb_Chr21g0308511 Lupinus albus HOM05D002727 ORTHO05D002856 1.3e-09 67.0 110 37.3
VMungo0720G0381 Vigna mungo HOM05D002727 ORTHO05D002856 1.3e-09 67.0 109 38.5
CsaV3_5G028530 Cucumis sativus L. HOM05D002727 ORTHO05D002856 1.6e-09 66.6 102 37.3
Phvul.007G037300 Phaseolus vulgaris HOM05D002727 ORTHO05D002856 1.6e-09 66.6 112 35.7
THA.LOC104824147 Tarenaya hassleriana HOM05D002727 ORTHO05D002856 1.6e-09 66.6 107 38.3
Sed0008746 Sechium edule HOM05D002727 ORTHO05D002856 2.1e-09 66.2 112 37.5
Haze_11036 Corylus avellana HOM05D002727 ORTHO05D002856 2.8e-09 65.9 99 40.4
CiPaw.05G247600 Carya illinoinensis HOM05D002727 ORTHO05D002856 6.2e-09 64.7 101 41.6
Ca_11101_v3 Cicer arietinum L. HOM05D002727 ORTHO05D002856 6.2e-09 64.7 102 40.2
Potri.008G128200 Populus trichocarpa HOM05D002727 ORTHO05D002856 6.2e-09 64.7 99 37.4
PGR102G0802 Punica granatum HOM05D002727 ORTHO05D002856 6.2e-09 64.7 99 40.4
FAN10G0312 Fragaria x ananassa HOM05D002727 ORTHO05D002856 8.2e-09 64.3 115 38.3
QL01p002288 Quercus lobata HOM05D002727 ORTHO05D002856 8.2e-09 64.3 97 41.2
CANSAT64G1895 Cannabis sativa HOM05D002727 ORTHO05D002856 1.1e-08 63.9 106 40.6
FAN04G2031 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.8e-08 63.2 116 37.1
FAN05G1389 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.8e-08 63.2 116 37.1
Ah.02g128090 Amaranthus hybridus HOM05D002727 ORTHO05D002856 2.4e-08 62.8 112 33.9
Aqoxy2G00907 Aquilegia oxysepala HOM05D002727 ORTHO05D002856 3.1e-08 62.4 111 36.9
FAN05G3985 Fragaria x ananassa HOM05D002727 ORTHO05D002856 3.1e-08 62.4 115 37.4
BcaC02g08989 Brassica carinata HOM05D002727 ORTHO05D002856 4.0e-08 62.0 109 38.5
Cfa008577 Carpinus fangiana HOM05D002727 ORTHO05D002856 4.0e-08 62.0 99 38.4
Glyma.20G124900 Glycine max HOM05D002727 ORTHO05D002856 4.0e-08 62.0 109 35.8
Psat6g221920 Pisum sativum HOM05D002727 ORTHO05D002856 4.0e-08 62.0 108 40.7
RcHm_v2.0_Chr4g0440841 Rosa chinensis HOM05D002727 ORTHO05D002856 4.0e-08 62.0 99 40.4
EL10Ac6g14255 Beta vulgaris HOM05D002727 ORTHO05D002856 9.0e-08 60.8 117 35.0
FAN18G2560 Fragaria x ananassa HOM05D002727 ORTHO05D002856 9.0e-08 60.8 121 37.2
MD09G1010600 Malus domestica HOM05D002727 ORTHO05D002856 9.0e-08 60.8 111 38.7
Manes.17G075200 Manihot esculenta HOM05D002727 ORTHO05D002856 9.0e-08 60.8 108 33.3
A04p14000 Brassica napus HOM05D002727 ORTHO05D002856 1.2e-07 60.5 94 42.6
C04p48030 Brassica napus HOM05D002727 ORTHO05D002856 1.2e-07 60.5 94 42.6
BolC4t26395H Brassica oleracea HOM05D002727 ORTHO05D002856 1.2e-07 60.5 94 42.6
FAN06G1995 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.2e-07 60.5 105 37.1
FAN06G2836 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.2e-07 60.5 105 37.1
Sp7g01010 Schrenkiella parvula HOM05D002727 ORTHO05D002856 1.2e-07 60.5 111 38.7
BcaB06g27576 Brassica carinata HOM05D002727 ORTHO05D002856 1.5e-07 60.1 94 41.5
BraA04t17062Z Brassica rapa HOM05D002727 ORTHO05D002856 1.5e-07 60.1 94 41.5
FAN06G1300 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.5e-07 60.1 115 36.5
Prupe.3G306500 Prunus persica HOM05D002727 ORTHO05D002856 1.5e-07 60.1 110 40.0
TPR.G4843 Trifolium pratense HOM05D002727 ORTHO05D002856 2.0e-07 59.7 91 42.9
Atru.chr6.2573 Acer truncatum HOM05D002727 ORTHO05D002856 2.6e-07 59.3 118 33.9
ClCG01G006130 Citrullus lanatus HOM05D002727 ORTHO05D002856 2.6e-07 59.3 102 37.3
FvH4_2g32760 Fragaria vesca HOM05D002727 ORTHO05D002856 2.6e-07 59.3 100 39.0
FAN12G0073 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.6e-07 59.3 119 31.9
FAN20G2548 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.6e-07 59.3 112 35.7
FAN27G2751 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.6e-07 59.3 100 39.0
FvH4_4g32590 Fragaria vesca HOM05D002727 ORTHO05D002856 3.4e-07 58.9 119 31.9
FvH4_7g12190 Fragaria vesca HOM05D002727 ORTHO05D002856 3.4e-07 58.9 105 36.2
FAN15G1981 Fragaria x ananassa HOM05D002727 ORTHO05D002856 3.4e-07 58.9 112 37.5
PGR119G0434 Punica granatum HOM05D002727 ORTHO05D002856 3.4e-07 58.9 99 36.4
Sc18g0004340 Simmondsia chinensis HOM05D002727 ORTHO05D002856 3.4e-07 58.9 92 42.4
Eucgr.G02206 Eucalyptus grandis HOM05D002727 ORTHO05D002856 4.5e-07 58.5 100 36.0
QL02p071341 Quercus lobata HOM05D002727 ORTHO05D002856 4.5e-07 58.5 116 36.2
Sed0024961 Sechium edule HOM05D002727 ORTHO05D002856 4.5e-07 58.5 112 35.7
arahy.Tifrunner.gnm1.ann1.L56H08 Arachis hypogaea HOM05D002727 ORTHO05D002856 5.8e-07 58.2 106 36.8
Glyma.09G119800 Glycine max HOM05D002727 ORTHO05D002856 5.8e-07 58.2 110 36.4
Eucgr.G02210 Eucalyptus grandis HOM05D002727 ORTHO05D002856 7.6e-07 57.8 100 37.0
CARHR213470 Cardamine hirsuta HOM05D002727 ORTHO05D002856 1.0e-06 57.4 93 39.8
AUR62039553 Chenopodium quinoa HOM05D002727 ORTHO05D002856 1.0e-06 57.4 105 33.3
arahy.Tifrunner.gnm1.ann1.A4HJXM Arachis hypogaea HOM05D002727 ORTHO05D002856 1.3e-06 57.0 108 36.1
Eucgr.G02208 Eucalyptus grandis HOM05D002727 ORTHO05D002856 1.3e-06 57.0 111 36.0
Medtr1g108470 Medicago truncatula HOM05D002727 ORTHO05D002856 1.3e-06 57.0 95 38.9
Thhalv10028170m.g Eutrema salsugineum HOM05D002727 ORTHO05D002856 1.7e-06 56.6 98 40.8
FAN14G5438 Fragaria x ananassa HOM05D002727 ORTHO05D002856 1.7e-06 56.6 121 34.7
FvH4_6g53540 Fragaria vesca HOM05D002727 ORTHO05D002856 2.9e-06 55.8 109 35.8
FAN05G4306 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.9e-06 55.8 106 36.8
FAN24G3357 Fragaria x ananassa HOM05D002727 ORTHO05D002856 2.9e-06 55.8 100 38.0
Medtr4g084160 Medicago truncatula HOM05D002727 ORTHO05D002856 2.9e-06 55.8 95 38.9
RcHm_v2.0_Chr2g0175581 Rosa chinensis HOM05D002727 ORTHO05D002856 3.8e-06 55.5 106 37.7
Aa31LG1G13580 Aethionema arabicum HOM05D002727 ORTHO05D002856 6.5e-06 54.7 107 38.3
FAN03G1798 Fragaria x ananassa HOM05D002727 ORTHO05D002856 6.5e-06 54.7 105 34.3
Lalb_Chr17g0338701 Lupinus albus HOM05D002727 ORTHO05D002856 6.5e-06 54.7 106 34.0
Manes.17G103100 Manihot esculenta HOM05D002727 ORTHO05D002856 6.5e-06 54.7 103 37.9
MD13G1026900 Malus domestica HOM05D002727 ORTHO05D002856 8.4e-06 54.3 100 37.0


User provided reference genes

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