Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold48G18067 Striga asiatica HOM05D008139 ORTHO05D009872 2.4e-54 215.3 113 100.0
Migut.N00505 Erythranthe guttata HOM05D008139 ORTHO05D009872 5.2e-25 117.9 101 58.4
SGA_v2.0_scaffold374G50235 Striga asiatica HOM05D008139 ORTHO05D009872 5.4e-22 107.8 93 58.1
SalBow8G2406 Salvia bowleyana HOM05D008139 ORTHO05D009872 3.0e-20 102.1 94 56.4
SalBow8G2479 Salvia bowleyana HOM05D008139 ORTHO05D009872 3.0e-20 102.1 94 56.4
Ciclev10017826m.g Citrus clementina HOM05D008139 ORTHO05D009872 6.2e-18 94.4 98 44.9
Migut.C00700 Erythranthe guttata HOM05D008139 ORTHO05D009872 8.0e-18 94.0 82 56.1
Gohir.D11G168166 Gossypium hirsutum HOM05D008139 ORTHO05D009872 1.8e-17 92.8 95 51.6
Gorai.007G179600 Gossypium raimondii HOM05D008139 ORTHO05D009872 1.8e-17 92.8 95 51.6
Cc10_g03180 Coffea canephora HOM05D008139 ORTHO05D009872 2.3e-17 92.4 84 52.4
Sabra17G0024400 Salix brachista HOM05D008139 ORTHO05D009872 4.0e-17 91.7 91 50.5
Gohir.A11G161900 Gossypium hirsutum HOM05D008139 ORTHO05D009872 6.8e-17 90.9 95 50.5
TWI36G0135 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 8.9e-17 90.5 98 45.9
Duzib133G0708 Durio zibethinus HOM05D008139 ORTHO05D009872 3.4e-16 88.6 94 45.7
DCAR_019772 Daucus carota HOM05D008139 ORTHO05D009872 9.8e-16 87.0 92 50.0
Manes.13G103000 Manihot esculenta HOM05D008139 ORTHO05D009872 9.8e-16 87.0 79 51.9
Hma1.2p1_0249F.1_g102430 Hydrangea macrophylla HOM05D008139 ORTHO05D009872 1.3e-15 86.7 85 48.2
Nitab4.5_0000790g0110 Nicotiana tabacum HOM05D008139 ORTHO05D009872 1.3e-15 86.7 101 46.5
Thecc.04G120400 Theobroma cacao HOM05D008139 ORTHO05D009872 2.2e-15 85.9 94 44.7
CAN.G1139.6 Capsicum annuum HOM05D008139 ORTHO05D009872 2.9e-15 85.5 81 51.9
Lalb_Chr03g0028851 Lupinus albus HOM05D008139 ORTHO05D009872 4.9e-15 84.7 80 52.5
Phvul.011G105800 Phaseolus vulgaris HOM05D008139 ORTHO05D009872 8.3e-15 84.0 88 45.5
Rhsim06G0158900 Rhododendron simsii HOM05D008139 ORTHO05D009872 8.3e-15 84.0 93 51.6
Solyc12g089070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 1.1e-14 83.6 91 45.1
Potri.017G037500 Populus trichocarpa HOM05D008139 ORTHO05D009872 1.4e-14 83.2 89 43.8
PGSC0003DMG400045933 Solanum tuberosum HOM05D008139 ORTHO05D009872 1.4e-14 83.2 81 46.9
Potri.007G122500 Populus trichocarpa HOM05D008139 ORTHO05D009872 1.9e-14 82.8 79 48.1
RcHm_v2.0_Chr2g0126901 Rosa chinensis HOM05D008139 ORTHO05D009872 1.9e-14 82.8 98 49.0
TWI75G0563 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 1.9e-14 82.8 90 46.7
Lsat_1_v5_gn_8_128280 Lactuca sativa HOM05D008139 ORTHO05D009872 2.4e-14 82.4 90 48.9
Prupe.3G131300 Prunus persica HOM05D008139 ORTHO05D009872 3.2e-14 82.0 89 52.8
TAR626G0589 Trochodendron aralioides HOM05D008139 ORTHO05D009872 3.2e-14 82.0 87 49.4
QL08p033688 Quercus lobata HOM05D008139 ORTHO05D009872 4.1e-14 81.6 85 48.2
TAR626G0598 Trochodendron aralioides HOM05D008139 ORTHO05D009872 4.1e-14 81.6 87 50.6
MELO3C018806.2 Cucumis melo HOM05D008139 ORTHO05D009872 5.4e-14 81.3 80 52.5
Lj3g0004995 Lotus japonicus HOM05D008139 ORTHO05D009872 7.0e-14 80.9 82 47.6
Cfa014432 Carpinus fangiana HOM05D008139 ORTHO05D009872 9.2e-14 80.5 90 47.8
ClCG02G001810 Citrullus lanatus HOM05D008139 ORTHO05D009872 9.2e-14 80.5 80 55.0
Eucgr.A01721 Eucalyptus grandis HOM05D008139 ORTHO05D009872 9.2e-14 80.5 111 40.5
FAN02G4280 Fragaria x ananassa HOM05D008139 ORTHO05D009872 9.2e-14 80.5 87 50.6
Nn1g07030 Nelumbo nucifera HOM05D008139 ORTHO05D009872 1.2e-13 80.1 81 50.6
CSS0007820 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 1.6e-13 79.7 85 48.2
CiPaw.04G117200 Carya illinoinensis HOM05D008139 ORTHO05D009872 1.6e-13 79.7 86 48.8
CsaV3_7G003730 Cucumis sativus L. HOM05D008139 ORTHO05D009872 2.0e-13 79.3 82 51.2
Lsat_1_v5_gn_5_103860 Lactuca sativa HOM05D008139 ORTHO05D009872 2.0e-13 79.3 78 48.7
MD07G1098300 Malus domestica HOM05D008139 ORTHO05D009872 2.7e-13 79.0 90 45.6
CSS0007440 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 3.5e-13 78.6 85 48.2
Nitab4.5_0003246g0060 Nicotiana tabacum HOM05D008139 ORTHO05D009872 3.5e-13 78.6 82 47.6
Sed0019249 Sechium edule HOM05D008139 ORTHO05D009872 3.5e-13 78.6 80 53.8
Atru.chr6.3155 Acer truncatum HOM05D008139 ORTHO05D009872 4.6e-13 78.2 90 46.7
Atru.chr6.3157 Acer truncatum HOM05D008139 ORTHO05D009872 4.6e-13 78.2 95 43.2
CAN.G1126.30 Capsicum annuum HOM05D008139 ORTHO05D009872 4.6e-13 78.2 79 49.4
COL.COLO4_15724 Corchorus olitorius HOM05D008139 ORTHO05D009872 4.6e-13 78.2 82 48.8
Nitab4.5_0000110g0510 Nicotiana tabacum HOM05D008139 ORTHO05D009872 4.6e-13 78.2 92 42.4
Peaxi162Scf00057g00045 Petunia axillaris HOM05D008139 ORTHO05D009872 6.0e-13 77.8 83 49.4
Prupe.2G122300 Prunus persica HOM05D008139 ORTHO05D009872 6.0e-13 77.8 90 45.6
Medtr4g046720 Medicago truncatula HOM05D008139 ORTHO05D009872 7.8e-13 77.4 79 49.4
Nitab4.5_0002296g0050 Nicotiana tabacum HOM05D008139 ORTHO05D009872 1.3e-12 76.6 92 43.5
TPR.G19049 Trifolium pratense HOM05D008139 ORTHO05D009872 1.3e-12 76.6 95 42.1
Glyma.12G100900 Glycine max HOM05D008139 ORTHO05D009872 3.0e-12 75.5 81 48.1
Dinv02745 Davidia involucrata HOM05D008139 ORTHO05D009872 2.5e-11 72.4 82 46.3
Aqoxy4G01991 Aquilegia oxysepala HOM05D008139 ORTHO05D009872 5.6e-11 71.2 85 42.4
Solyc04g080070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 9.5e-11 70.5 79 41.8
Sopen04g033660 Solanum pennellii HOM05D008139 ORTHO05D009872 9.5e-11 70.5 79 41.8
unitig_46.g17928 Utricularia gibba HOM05D008139 ORTHO05D009872 1.2e-10 70.1 80 46.2
THA.LOC104816105 Tarenaya hassleriana HOM05D011011 ORTHO05D009872 3.6e-10 68.6 91 40.7
PGSC0003DMG400005169 Solanum tuberosum HOM05D008139 ORTHO05D009872 6.2e-10 67.8 79 40.5
PGR083G1842 Punica granatum HOM05D008139 ORTHO05D009872 1.1e-09 67.0 88 42.0
A03p18150 Brassica napus HOM05D011011 ORTHO05D009872 1.8e-09 66.2 91 38.5
BraA03t11075Z Brassica rapa HOM05D011011 ORTHO05D009872 1.8e-09 66.2 91 38.5
Sp4g14730 Schrenkiella parvula HOM05D011011 ORTHO05D009872 2.3e-09 65.9 84 40.5
Carub.0004s1371 Capsella rubella HOM05D011011 ORTHO05D009872 3.1e-09 65.5 85 40.0
AT2G32360 Arabidopsis thaliana HOM05D011011 ORTHO05D009872 4.0e-09 65.1 90 38.9
BolC4t27657H Brassica oleracea HOM05D011011 ORTHO05D009872 4.0e-09 65.1 82 40.2
AL4G27740 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 6.8e-09 64.3 85 38.8
C04p61740 Brassica napus HOM05D011011 ORTHO05D009872 6.8e-09 64.3 82 40.2
BcaC02g07938 Brassica carinata HOM05D011011 ORTHO05D009872 8.9e-09 63.9 82 40.2
AL125U10020 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 3.4e-08 62.0 85 37.6
BcaB01g03982 Brassica carinata HOM05D011011 ORTHO05D009872 4.4e-08 61.6 85 35.3
BcaB06g28588 Brassica carinata HOM05D011011 ORTHO05D009872 4.4e-08 61.6 84 38.1
BcaC01g05908 Brassica carinata HOM05D011011 ORTHO05D009872 4.4e-08 61.6 85 35.3
C03p21180 Brassica napus HOM05D011011 ORTHO05D009872 4.4e-08 61.6 85 35.3
BcaB01g03981 Brassica carinata HOM05D011011 ORTHO05D009872 9.9e-08 60.5 91 36.3
BolC3t14501H Brassica oleracea HOM05D011011 ORTHO05D009872 1.3e-07 60.1 85 35.3
CARHR126180 Cardamine hirsuta HOM05D011011 ORTHO05D009872 2.2e-07 59.3 85 38.8
Potri.017G037400 Populus trichocarpa HOM05D008139 ORTHO05D009872 6.4e-07 57.8 78 38.5
TAR626G1168 Trochodendron aralioides HOM05D008139 ORTHO05D009872 7.1e-06 54.3 88 38.6


User provided reference genes

Program Settings