Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold48G17919 Striga asiatica HOM05D004164 ORTHO05D004891 1.4e-153 546.2 266 100.0
SGA_v2.0_scaffold47G17582 Striga asiatica HOM05D004164 ORTHO05D004891 4.6e-64 248.8 164 78.7
SGA_v2.0_scaffold72G24132 Striga asiatica HOM05D004164 ORTHO05D004891 9.4e-17 91.7 46 95.7
TPR.G10321 Trifolium pratense HOM05D004164 ORTHO05D004891 4.1e-12 76.3 47 80.9
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 7.0e-12 75.5 40 87.5
Cfa005671 Carpinus fangiana HOM05D004164 ORTHO05D004891 9.1e-12 75.1 47 78.7
Hma1.2p1_0784F.1_g217100 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 9.1e-12 75.1 47 78.7
Potri.017G051800 Populus trichocarpa HOM05D004164 ORTHO05D004891 9.1e-12 75.1 47 78.7
Sabra17G0043400 Salix brachista HOM05D004164 ORTHO05D004891 9.1e-12 75.1 47 78.7
SabraUnG0002700 Salix brachista HOM05D004164 ORTHO05D004891 9.1e-12 75.1 47 78.7
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 9.1e-12 75.1 75 52.0
Thecc.02G135100 Theobroma cacao HOM05D004164 ORTHO05D004891 9.1e-12 75.1 47 78.7
VMungo0540G2402 Vigna mungo HOM05D004164 ORTHO05D004891 1.2e-11 74.7 47 78.7
arahy.Tifrunner.gnm1.ann1.XH6BES Arachis hypogaea HOM05D004164 ORTHO05D004891 1.6e-11 74.3 47 76.6
Atru.chr6.1169 Acer truncatum HOM05D004164 ORTHO05D004891 2.0e-11 73.9 51 68.6
Cc02_g21290 Coffea canephora HOM05D004164 ORTHO05D004891 2.0e-11 73.9 47 76.6
Oeu007975.1 Olea europaea HOM05D004164 ORTHO05D004891 2.0e-11 73.9 47 76.6
Psat5g128640 Pisum sativum HOM05D004164 ORTHO05D004891 2.0e-11 73.9 47 78.7
DCAR_001777 Daucus carota HOM05D004164 ORTHO05D004891 3.5e-11 73.2 47 78.7
vmacro01837 Vaccinium macrocarpon HOM05D004164 ORTHO05D004891 3.5e-11 73.2 46 78.3
arahy.Tifrunner.gnm1.ann1.IF3X13 Arachis hypogaea HOM05D004164 ORTHO05D004891 4.5e-11 72.8 46 76.1
Ciclev10028812m.g Citrus clementina HOM05D004164 ORTHO05D004891 4.5e-11 72.8 47 74.5
Haze_10597 Corylus avellana HOM05D004164 ORTHO05D004891 4.5e-11 72.8 44 79.5
Medtr3g069190 Medicago truncatula HOM05D004164 ORTHO05D004891 4.5e-11 72.8 47 74.5
THA.LOC104799917 Tarenaya hassleriana HOM05D004164 ORTHO05D004891 4.5e-11 72.8 46 76.1
Actinidia24002 Actinidia chinensis HOM05D004164 ORTHO05D004891 5.9e-11 72.4 47 76.6
Duzib132G1201 Durio zibethinus HOM05D004164 ORTHO05D004891 5.9e-11 72.4 47 74.5
ECA234G4615 Erigeron canadensis HOM05D004164 ORTHO05D004891 5.9e-11 72.4 47 72.3
Gohir.A12G015600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 5.9e-11 72.4 47 74.5
Gohir.D12G015900 Gossypium hirsutum HOM05D004164 ORTHO05D004891 5.9e-11 72.4 47 74.5
Manes.07G033800 Manihot esculenta HOM05D004164 ORTHO05D004891 5.9e-11 72.4 47 74.5
Peaxi162Scf01060g00013 Petunia axillaris HOM05D004164 ORTHO05D004891 5.9e-11 72.4 46 76.1
TWI14G1169 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 5.9e-11 72.4 47 74.5
Dinv24178 Davidia involucrata HOM05D004164 ORTHO05D004891 7.7e-11 72.0 47 76.6
Rhsim11G0139400 Rhododendron simsii HOM05D004164 ORTHO05D004891 7.7e-11 72.0 46 76.1
Ca_16502_v3 Cicer arietinum L. HOM05D004164 ORTHO05D004891 1.0e-10 71.6 47 76.6
Gorai.008G016000 Gossypium raimondii HOM05D004164 ORTHO05D004891 1.0e-10 71.6 47 74.5
Lj5A235T51 Lonicera japonica HOM05D004164 ORTHO05D004891 1.0e-10 71.6 47 76.6
Lj6g0000010 Lotus japonicus HOM05D004164 ORTHO05D004891 1.0e-10 71.6 48 72.9
PSO210G2683 Papaver somniferum HOM05D004164 ORTHO05D004891 1.0e-10 71.6 46 76.1
CiPaw.05G034200 Carya illinoinensis HOM05D004164 ORTHO05D004891 1.3e-10 71.2 47 74.5
FAN15G1714 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.3e-10 71.2 47 74.5
FAN18G3873 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.3e-10 71.2 47 74.5
Nitab4.5_0002401g0010 Nicotiana tabacum HOM05D004164 ORTHO05D004891 1.3e-10 71.2 46 76.1
ATR0782G002 Amborella trichopoda HOM05D004164 ORTHO05D004891 1.7e-10 70.9 47 72.3
Prupe.8G064000 Prunus persica HOM05D004164 ORTHO05D004891 1.7e-10 70.9 47 74.5
CSS0002795 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 2.2e-10 70.5 46 76.1
CSS0040430 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 2.2e-10 70.5 46 76.1
Sc08g0003530 Simmondsia chinensis HOM05D004164 ORTHO05D004891 2.2e-10 70.5 46 71.7
MSTRG.20292 Avicennia marina HOM05D004164 ORTHO05D004891 2.9e-10 70.1 47 72.3
Migut.B00589 Erythranthe guttata HOM05D004164 ORTHO05D004891 2.9e-10 70.1 62 59.7
Phvul.006G205400 Phaseolus vulgaris HOM05D004164 ORTHO05D004891 2.9e-10 70.1 48 72.9
Eucgr.G00847 Eucalyptus grandis HOM05D004164 ORTHO05D004891 3.8e-10 69.7 47 72.3
Lsat_1_v5_gn_5_108141 Lactuca sativa HOM05D004164 ORTHO05D004891 3.8e-10 69.7 46 71.7
Lj6g0021052 Lotus japonicus HOM05D004164 ORTHO05D004891 3.8e-10 69.7 47 72.3
QL11p022503 Quercus lobata HOM05D004164 ORTHO05D004891 3.8e-10 69.7 47 72.3
TWI59G0238 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 3.8e-10 69.7 47 72.3
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 5.0e-10 69.3 89 43.8
CANSAT11G1236 Cannabis sativa HOM05D004164 ORTHO05D004891 5.0e-10 69.3 46 69.6
Glyma.08G178100 Glycine max HOM05D004164 ORTHO05D004891 5.0e-10 69.3 47 74.5
HanXRQChr10g0291731 Helianthus annuus HOM05D004164 ORTHO05D004891 5.0e-10 69.3 46 69.6
Nitab4.5_0000863g0200 Nicotiana tabacum HOM05D004164 ORTHO05D004891 5.0e-10 69.3 50 70.0
PGR042G3604 Punica granatum HOM05D004164 ORTHO05D004891 5.0e-10 69.3 45 73.3
RcHm_v2.0_Chr6g0271551 Rosa chinensis HOM05D004164 ORTHO05D004891 5.0e-10 69.3 47 72.3
RcHm_v2.0_Chr6g0271711 Rosa chinensis HOM05D004164 ORTHO05D004891 5.0e-10 69.3 47 72.3
TAR381G0722 Trochodendron aralioides HOM05D004164 ORTHO05D004891 8.5e-10 68.6 44 72.7
MD05G1043200 Malus domestica HOM05D004164 ORTHO05D004891 1.1e-09 68.2 44 75.0
SGA_v2.0_scaffold83G26314 Striga asiatica HOM05D004164 ORTHO05D004891 1.5e-09 67.8 44 72.7
AUR62010154 Chenopodium quinoa HOM05D004164 ORTHO05D004891 1.9e-09 67.4 46 69.6
AUR62013150 Chenopodium quinoa HOM05D004164 ORTHO05D004891 1.9e-09 67.4 46 69.6
SalBow5G1609 Salvia bowleyana HOM05D004164 ORTHO05D004891 1.9e-09 67.4 44 75.0
SalBow5G4318 Salvia bowleyana HOM05D004164 ORTHO05D004891 1.9e-09 67.4 44 75.0
Sopen01g047880 Solanum pennellii HOM05D004164 ORTHO05D004891 1.9e-09 67.4 46 73.9
PGSC0003DMG400012550 Solanum tuberosum HOM05D004164 ORTHO05D004891 1.9e-09 67.4 46 73.9
GSVIVG01015759001 Vitis vinifera HOM05D004164 ORTHO05D004891 1.9e-09 67.4 47 63.8
Aqoxy6G02071 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 2.5e-09 67.0 46 69.6
EL10Ac9g21504 Beta vulgaris HOM05D004164 ORTHO05D004891 2.5e-09 67.0 46 69.6
CsaV3_7G006720 Cucumis sativus L. HOM05D004164 ORTHO05D004891 3.2e-09 66.6 47 70.2
Lalb_Chr20g0122971 Lupinus albus HOM05D004164 ORTHO05D004891 4.2e-09 66.2 47 68.1
Aa31LG1G17650 Aethionema arabicum HOM05D004164 ORTHO05D004891 5.5e-09 65.9 46 67.4
Ah.01g022180 Amaranthus hybridus HOM05D004164 ORTHO05D004891 5.5e-09 65.9 46 65.2
Thhalv10004559m.g Eutrema salsugineum HOM05D004164 ORTHO05D004891 7.2e-09 65.5 46 71.7
Lj4g0000280 Lotus japonicus HOM05D004164 ORTHO05D004891 7.2e-09 65.5 47 63.8
Os08g0485400 Oryza sativa ssp. japonica HOM05D004164 ORTHO05D004891 7.2e-09 65.5 64 53.1
CAN.G523.53 Capsicum annuum HOM05D004164 ORTHO05D004891 9.4e-09 65.1 50 64.0
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 9.4e-09 65.1 89 41.6
Hund00072 Selenicereus undatus HOM05D004164 ORTHO05D004891 9.4e-09 65.1 46 65.2
BcaB02g09775 Brassica carinata HOM05D004164 ORTHO05D004891 1.6e-08 64.3 46 69.6
Carub.0008s2504 Capsella rubella HOM05D004164 ORTHO05D004891 1.6e-08 64.3 46 69.6
MELO3C018623.2 Cucumis melo HOM05D004164 ORTHO05D004891 1.6e-08 64.3 47 68.1
Sp2g27310 Schrenkiella parvula HOM05D004164 ORTHO05D004891 1.6e-08 64.3 46 69.6
Zm00001eb033580 Zea mays HOM05D004164 ORTHO05D004891 1.6e-08 64.3 61 57.4
ClCG09G015620 Citrullus lanatus HOM05D004164 ORTHO05D004891 2.1e-08 63.9 47 70.2
Sed0011830 Sechium edule HOM05D004164 ORTHO05D004891 2.1e-08 63.9 48 64.6
HPP92_004281 Vanilla planifolia HOM05D004164 ORTHO05D004891 2.7e-08 63.5 47 61.7
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 4.7e-08 62.8 40 72.5
Gohir.A04G114200 Gossypium hirsutum HOM05D004164 ORTHO05D004891 6.1e-08 62.4 47 63.8
Solyc01g105370.4 Solanum lycopersicum HOM05D004164 ORTHO05D004891 6.1e-08 62.4 46 71.7
AT5G64250 Arabidopsis thaliana HOM05D004164 ORTHO05D004891 8.0e-08 62.0 43 72.1
CARHR278160 Cardamine hirsuta HOM05D004164 ORTHO05D004891 8.0e-08 62.0 46 67.4
BcaC01g02680 Brassica carinata HOM05D004164 ORTHO05D004891 1.4e-07 61.2 46 67.4
A06p30940 Brassica napus HOM05D004164 ORTHO05D004891 1.4e-07 61.2 46 67.4
C03p62030 Brassica napus HOM05D004164 ORTHO05D004891 1.4e-07 61.2 46 67.4
BolC3t18463H Brassica oleracea HOM05D004164 ORTHO05D004891 1.4e-07 61.2 46 67.4
BraA06t26033Z Brassica rapa HOM05D004164 ORTHO05D004891 1.4e-07 61.2 46 67.4
AL8G41570 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 3.0e-07 60.1 43 69.8
AL8G41600 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 3.0e-07 60.1 43 69.8
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 4.0e-07 59.7 39 64.1
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 5.2e-07 59.3 39 66.7
SMO143G0159 Selaginella moellendorffii HOM05D004164 ORTHO05D004891 5.2e-07 59.3 46 56.5
Gohir.D04G155600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 8.8e-07 58.5 47 59.6
Gorai.012G142600 Gossypium raimondii HOM05D004164 ORTHO05D004891 8.8e-07 58.5 47 59.6
MBI02_g02172_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 2.0e-06 57.4 44 61.4
Pp3c2_200 Physcomitrium patens HOM05D004164 ORTHO05D004891 2.0e-06 57.4 60 53.3
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 2.6e-06 57.0 39 64.1
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 4.4e-06 56.2 39 64.1
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 5.7e-06 55.8 39 64.1
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 9.7e-06 55.1 39 64.1


User provided reference genes

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