Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold48G17914 Striga asiatica HOM05D002646 ORTHO05D002782 4.4e-95 351.3 176 100.0
SGA_v2.0_scaffold16G07867 Striga asiatica HOM05D002646 ORTHO05D002782 1.2e-89 333.2 176 94.3
SGA_v2.0_scaffold63G21638 Striga asiatica HOM05D002646 ORTHO05D002782 3.0e-56 222.2 124 85.5
MSTRG.13432 Avicennia marina HOM05D002646 ORTHO05D002782 6.4e-30 134.8 136 51.5
Migut.E00070 Erythranthe guttata HOM05D002646 ORTHO05D002782 1.9e-29 133.3 150 50.7
Lj9A571T76 Lonicera japonica HOM05D002646 ORTHO05D002782 4.3e-26 122.1 83 68.7
Cc02_g36600 Coffea canephora HOM05D002646 ORTHO05D002782 3.8e-22 109.0 118 46.6
Peaxi162Scf00021g01520 Petunia axillaris HOM05D002646 ORTHO05D002782 3.2e-21 105.9 90 54.4
Rhsim08G0118000 Rhododendron simsii HOM05D002646 ORTHO05D002782 7.1e-21 104.8 92 54.3
RhsimUnG0099800 Rhododendron simsii HOM05D002646 ORTHO05D002782 7.1e-21 104.8 92 54.3
TAR374G0079 Trochodendron aralioides HOM05D002646 ORTHO05D002782 1.2e-20 104.0 104 51.9
ClCG05G002180 Citrullus lanatus HOM05D002646 ORTHO05D002782 1.6e-20 103.6 94 51.1
Dinv29528 Davidia involucrata HOM05D002646 ORTHO05D002782 1.6e-20 103.6 91 52.7
PGSC0003DMG400012755 Solanum tuberosum HOM05D002646 ORTHO05D002782 2.1e-20 103.2 100 50.0
Nitab4.5_0002993g0040 Nicotiana tabacum HOM05D002646 ORTHO05D002782 2.7e-20 102.8 90 53.3
Nitab4.5_0000457g0400 Nicotiana tabacum HOM05D002646 ORTHO05D002782 3.5e-20 102.4 90 54.4
Actinidia12264 Actinidia chinensis HOM05D002646 ORTHO05D002782 4.6e-20 102.1 92 53.3
unitig_8.g3957 Utricularia gibba HOM05D002646 ORTHO05D002782 6.0e-20 101.7 88 60.2
Sabra14G0050200 Salix brachista HOM05D002646 ORTHO05D002782 7.8e-20 101.3 88 53.4
Sopen01g037190 Solanum pennellii HOM05D002646 ORTHO05D002782 7.8e-20 101.3 106 47.2
Solyc01g091450.3 Solanum lycopersicum HOM05D002646 ORTHO05D002782 1.0e-19 100.9 90 52.2
CAN.G388.3 Capsicum annuum HOM05D002646 ORTHO05D002782 1.3e-19 100.5 83 55.4
Lj1g0023852 Lotus japonicus HOM05D002646 ORTHO05D002782 1.7e-19 100.1 80 58.8
Thecc.01G375100 Theobroma cacao HOM05D002646 ORTHO05D002782 1.7e-19 100.1 77 58.4
Hund22797 Selenicereus undatus HOM05D002646 ORTHO05D002782 2.3e-19 99.8 112 43.8
Gohir.A08G133800 Gossypium hirsutum HOM05D002646 ORTHO05D002782 5.1e-19 98.6 77 55.8
Manes.01G265200 Manihot esculenta HOM05D002646 ORTHO05D002782 6.6e-19 98.2 88 51.1
Potri.014G070500 Populus trichocarpa HOM05D002646 ORTHO05D002782 6.6e-19 98.2 88 52.3
Haze_16825 Corylus avellana HOM05D002646 ORTHO05D002782 1.1e-18 97.4 89 51.7
Lalb_Chr03g0039441 Lupinus albus HOM05D002646 ORTHO05D002782 1.1e-18 97.4 96 50.0
Atru.chr5.320 Acer truncatum HOM05D002646 ORTHO05D002782 1.5e-18 97.1 99 47.5
Ciclev10020287m.g Citrus clementina HOM05D002646 ORTHO05D002782 1.5e-18 97.1 77 54.5
vmacro13392 Vaccinium macrocarpon HOM05D002646 ORTHO05D002782 1.5e-18 97.1 81 54.3
GSVIVG01027622001 Vitis vinifera HOM05D002646 ORTHO05D002782 1.5e-18 97.1 77 55.8
Nn4g26422 Nelumbo nucifera HOM05D002646 ORTHO05D002782 1.9e-18 96.7 81 53.1
Gohir.D08G155000 Gossypium hirsutum HOM05D002646 ORTHO05D002782 2.5e-18 96.3 77 54.5
Gorai.004G161000 Gossypium raimondii HOM05D002646 ORTHO05D002782 2.5e-18 96.3 77 54.5
Ca_07824_v3 Cicer arietinum L. HOM05D002646 ORTHO05D002782 3.3e-18 95.9 80 53.8
Duzib268G1615 Durio zibethinus HOM05D002646 ORTHO05D002782 3.3e-18 95.9 118 40.7
THA.LOC104817013 Tarenaya hassleriana HOM05D002646 ORTHO05D002782 3.3e-18 95.9 80 53.8
Ah.13g069210 Amaranthus hybridus HOM05D002646 ORTHO05D002782 4.3e-18 95.5 72 59.7
Duzib268G0058 Durio zibethinus HOM05D002646 ORTHO05D002782 4.3e-18 95.5 118 41.5
Psat3g115520 Pisum sativum HOM05D002646 ORTHO05D002782 4.3e-18 95.5 79 54.4
CANSAT11G0871 Cannabis sativa HOM05D002646 ORTHO05D002782 5.6e-18 95.1 91 50.5
Duzib268G0077 Durio zibethinus HOM05D002646 ORTHO05D002782 5.6e-18 95.1 118 41.5
TPR.G26954 Trifolium pratense HOM05D002646 ORTHO05D002782 5.6e-18 95.1 80 53.8
arahy.Tifrunner.gnm1.ann1.HKT7FP Arachis hypogaea HOM05D002646 ORTHO05D002782 7.3e-18 94.7 76 56.6
CsaV3_3G009620 Cucumis sativus L. HOM05D002646 ORTHO05D002782 7.3e-18 94.7 92 48.9
MELO3C006182.2 Cucumis melo HOM05D002646 ORTHO05D002782 9.6e-18 94.4 92 48.9
Ah.13g074290 Amaranthus hybridus HOM05D002646 ORTHO05D002782 1.3e-17 94.0 79 51.9
Glyma.09G268500 Glycine max HOM05D002646 ORTHO05D002782 1.3e-17 94.0 80 52.5
arahy.Tifrunner.gnm1.ann1.7IJL1I Arachis hypogaea HOM05D002646 ORTHO05D002782 1.6e-17 93.6 76 55.3
Medtr7g075010 Medicago truncatula HOM05D002646 ORTHO05D002782 1.6e-17 93.6 80 52.5
Glyma.18G221100 Glycine max HOM05D002646 ORTHO05D002782 3.6e-17 92.4 88 48.9
Sed0003475 Sechium edule HOM05D002646 ORTHO05D002782 3.6e-17 92.4 96 44.8
Eucgr.G00320 Eucalyptus grandis HOM05D002646 ORTHO05D002782 6.2e-17 91.7 74 54.1
PGR042G3460 Punica granatum HOM05D002646 ORTHO05D002782 6.2e-17 91.7 74 58.1
Ah.13g069980 Amaranthus hybridus HOM05D002646 ORTHO05D002782 8.1e-17 91.3 72 58.3
COL.COLO4_12558 Corchorus olitorius HOM05D002646 ORTHO05D002782 8.1e-17 91.3 77 53.2
CDE11G0049 Ceratophyllum demersum HOM05D002646 ORTHO05D002782 1.8e-16 90.1 96 44.8
Prupe.2G146700 Prunus persica HOM05D002646 ORTHO05D002782 1.8e-16 90.1 86 46.5
QL12p017558 Quercus lobata HOM05D002646 ORTHO05D002782 1.8e-16 90.1 135 34.1
RcHm_v2.0_Chr1g0350721 Rosa chinensis HOM05D002646 ORTHO05D002782 2.4e-16 89.7 102 43.1
EL10Ac2g03761 Beta vulgaris HOM05D002646 ORTHO05D002782 4.0e-16 89.0 74 54.1
HanXRQChr04g0122351 Helianthus annuus HOM05D002646 ORTHO05D002782 4.0e-16 89.0 95 43.2
Phvul.008G083500 Phaseolus vulgaris HOM05D002646 ORTHO05D002782 4.0e-16 89.0 79 51.9
AL1G10350 Arabidopsis lyrata HOM05D002646 ORTHO05D002782 5.3e-16 88.6 123 42.3
FAN03G1830 Fragaria x ananassa HOM05D002646 ORTHO05D002782 5.3e-16 88.6 121 37.2
Lsat_1_v5_gn_7_7441 Lactuca sativa HOM05D002646 ORTHO05D002782 5.3e-16 88.6 91 46.2
CSS0036552 Camellia sinensis var. sinensis HOM05D002646 ORTHO05D002782 6.9e-16 88.2 77 50.6
Thhalv10007755m.g Eutrema salsugineum HOM05D002646 ORTHO05D002782 6.9e-16 88.2 80 51.2
CSS0029682 Camellia sinensis var. sinensis HOM05D002646 ORTHO05D002782 9.0e-16 87.8 77 50.6
FAN01G3025 Fragaria x ananassa HOM05D002646 ORTHO05D002782 1.2e-15 87.4 121 36.4
Dinv43720 Davidia involucrata HOM05D002646 ORTHO05D002782 1.5e-15 87.0 60 61.7
Phvul.008G076800 Phaseolus vulgaris HOM05D002646 ORTHO05D002782 1.5e-15 87.0 76 53.9
Sc19g0004610 Simmondsia chinensis HOM05D002646 ORTHO05D002782 1.5e-15 87.0 118 41.5
HPP92_001656 Vanilla planifolia HOM05D002646 ORTHO05D002782 1.5e-15 87.0 75 52.0
ATR0697G028 Amborella trichopoda HOM05D002646 ORTHO05D002782 2.0e-15 86.7 74 48.6
TWI23G1057 Tripterygium wilfordii HOM05D002646 ORTHO05D002782 2.0e-15 86.7 101 42.6
CARHR000380 Cardamine hirsuta HOM05D002646 ORTHO05D002782 2.6e-15 86.3 79 51.9
MD08G1028000 Malus domestica HOM05D002646 ORTHO05D002782 2.6e-15 86.3 84 45.2
DCAR_006871 Daucus carota HOM05D002646 ORTHO05D002782 4.5e-15 85.5 91 44.0
PSO782G0929 Papaver somniferum HOM05D002646 ORTHO05D002782 7.6e-15 84.7 90 45.6
FvH4_7g12010 Fragaria vesca HOM05D002646 ORTHO05D002782 9.9e-15 84.3 86 44.2
FAN06G4772 Fragaria x ananassa HOM05D002646 ORTHO05D002782 9.9e-15 84.3 86 44.2
FAN10G1248 Fragaria x ananassa HOM05D002646 ORTHO05D002782 9.9e-15 84.3 86 44.2
FAN10G4284 Fragaria x ananassa HOM05D002646 ORTHO05D002782 9.9e-15 84.3 86 44.2
PSO478G1528 Papaver somniferum HOM05D002646 ORTHO05D002782 9.9e-15 84.3 90 45.6
Aa31LG1G11300 Aethionema arabicum HOM05D002646 ORTHO05D002782 1.7e-14 83.6 80 46.2
Aqoxy7G00603 Aquilegia oxysepala HOM05D002646 ORTHO05D002782 1.7e-14 83.6 79 50.6
Carub.0001s0027 Capsella rubella HOM05D002646 ORTHO05D002782 2.9e-14 82.8 80 47.5
MBI04_g32239_MAGBIO Magnolia biondii HOM05D002646 ORTHO05D002782 2.9e-14 82.8 96 41.7
Oeu003485.1 Olea europaea HOM05D002646 ORTHO05D002782 2.9e-14 82.8 58 58.6
Sp1g00330 Schrenkiella parvula HOM05D002646 ORTHO05D002782 2.9e-14 82.8 80 47.5
AT1G01970 Arabidopsis thaliana HOM05D002646 ORTHO05D002782 3.8e-14 82.4 80 47.5
CiPaw.01G261200 Carya illinoinensis HOM05D002646 ORTHO05D002782 4.2e-13 79.0 60 55.0
A10p00160 Brassica napus HOM05D002646 ORTHO05D002782 2.1e-12 76.6 75 46.7
BraA10t42295Z Brassica rapa HOM05D002646 ORTHO05D002782 2.1e-12 76.6 75 46.7
AUR62030050 Chenopodium quinoa HOM05D002646 ORTHO05D002782 2.1e-12 76.6 60 55.0
BcaB03g13627 Brassica carinata HOM05D002646 ORTHO05D002782 4.6e-12 75.5 79 46.8
Zm00001eb329950 Zea mays HOM05D002646 ORTHO05D002782 4.6e-12 75.5 96 38.5
Ah.12g056930 Amaranthus hybridus HOM05D002646 ORTHO05D002782 7.9e-12 74.7 54 64.8
AUR62002634 Chenopodium quinoa HOM05D002646 ORTHO05D002782 7.9e-12 74.7 60 53.3
BcaNung05290 Brassica carinata HOM05D002646 ORTHO05D002782 1.0e-11 74.3 129 33.3
C05p00160 Brassica napus HOM05D002646 ORTHO05D002782 1.0e-11 74.3 129 33.3
BolC5t28806H Brassica oleracea HOM05D002646 ORTHO05D002782 1.0e-11 74.3 129 33.3
Actinidia31415 Actinidia chinensis HOM05D002646 ORTHO05D002782 5.6e-10 68.6 60 48.3
SEGI_14547 Sequoiadendron giganteum HOM05D007858 ORTHO05D002782 7.4e-10 68.2 98 36.7
Os07g0661900 Oryza sativa ssp. japonica HOM05D002646 ORTHO05D002782 2.6e-07 59.7 99 31.3


User provided reference genes

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