Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 2.8e-118 428.7 231 100.0
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 5.5e-98 361.3 235 80.0
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 3.2e-90 335.5 233 75.1
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 1.0e-88 330.5 231 71.9
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 1.0e-88 330.5 231 71.9
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 1.0e-80 303.9 234 67.5
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 4.4e-79 298.5 231 65.8
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 9.8e-79 297.4 235 66.0
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 2.2e-78 296.2 234 65.4
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 4.9e-78 295.0 233 67.8
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 6.3e-78 294.7 230 65.2
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 1.8e-77 293.1 230 64.8
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 5.4e-77 291.6 231 64.9
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 1.6e-76 290.0 235 65.1
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 2.0e-76 289.7 228 64.5
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 4.5e-76 288.5 230 64.3
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 7.8e-76 287.7 230 63.5
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 8.6e-75 284.3 212 68.4
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 1.1e-74 283.9 235 64.3
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 1.1e-74 283.9 234 63.7
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 1.1e-74 283.9 235 66.0
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 3.3e-74 282.3 233 62.2
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 4.3e-74 282.0 233 62.7
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 4.3e-74 282.0 230 65.2
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 7.3e-74 281.2 234 63.7
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 1.2e-73 280.4 235 62.6
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 1.2e-73 280.4 235 63.4
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 1.6e-73 280.0 229 64.2
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 1.6e-73 280.0 237 63.7
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 2.8e-73 279.3 235 62.1
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 8.0e-73 277.7 235 63.4
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 8.0e-73 277.7 234 61.1
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 1.0e-72 277.3 232 62.5
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 1.4e-72 276.9 231 63.2
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 1.8e-72 276.6 234 62.0
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 1.8e-72 276.6 236 63.1
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 2.3e-72 276.2 235 63.4
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 3.0e-72 275.8 236 62.7
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 6.8e-72 274.6 233 62.2
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 6.8e-72 274.6 212 67.0
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 3.4e-71 272.3 235 60.4
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 5.8e-71 271.6 234 62.4
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 7.5e-71 271.2 232 62.9
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 9.8e-71 270.8 234 60.7
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 9.8e-71 270.8 234 59.0
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 4.9e-70 268.5 241 59.3
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 2.4e-69 266.2 235 60.9
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 4.1e-69 265.4 232 60.8
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 4.1e-69 265.4 237 60.8
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 7.0e-69 264.6 225 63.6
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 9.2e-69 264.2 234 60.7
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 3.5e-68 262.3 230 59.1
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 1.0e-67 260.8 236 60.2
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 3.9e-67 258.8 236 58.9
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 1.1e-66 257.3 232 57.3
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 1.5e-66 256.9 233 63.9
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 5.6e-66 255.0 231 56.7
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 2.8e-65 252.7 248 54.8
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 6.2e-65 251.5 232 56.5
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 6.8e-64 248.1 231 56.7
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 8.9e-64 247.7 231 56.3
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 1.2e-63 247.3 240 56.7
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 5.8e-63 245.0 232 57.3
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 5.8e-63 245.0 230 57.8
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 5.8e-63 245.0 215 59.5
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 1.3e-62 243.8 231 55.8
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 1.7e-62 243.4 236 57.2
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 2.9e-62 242.7 231 56.3
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 2.9e-62 242.7 234 56.4
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 1.4e-61 240.4 236 56.4
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 4.1e-61 238.8 233 55.8
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 5.4e-61 238.4 225 56.4
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 5.4e-61 238.4 240 55.4
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 7.0e-61 238.0 235 54.9
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 7.0e-61 238.0 224 59.8
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 9.2e-61 237.7 229 56.8
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 4.6e-60 235.3 234 56.8
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 6.0e-60 235.0 234 54.7
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 1.3e-59 233.8 230 53.0
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 1.7e-59 233.4 232 52.6
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 2.3e-59 233.0 237 55.3
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 2.3e-59 233.0 231 51.9
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 2.3e-59 233.0 232 54.3
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 5.1e-59 231.9 239 54.0
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 8.6e-59 231.1 233 53.2
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 8.6e-59 231.1 230 53.5
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 1.5e-58 230.3 235 53.6
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 1.9e-58 229.9 234 53.0
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 7.3e-58 228.0 287 48.8
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 1.2e-57 227.3 232 53.4
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 1.8e-56 223.4 236 51.3
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 2.3e-56 223.0 242 52.5
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 2.0e-55 219.9 247 49.4
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 3.4e-55 219.2 231 54.1
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 1.7e-54 216.9 175 61.1
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 6.4e-54 214.9 280 47.9
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 3.2e-53 212.6 250 49.2
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 6.0e-52 208.4 233 50.2
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 1.0e-51 207.6 240 51.2
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 5.1e-51 205.3 241 50.2
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 1.1e-50 204.1 187 57.2
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 4.3e-50 202.2 237 45.6
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 1.6e-49 200.3 231 48.1
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 5.8e-47 191.8 235 47.7
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 1.3e-46 190.7 237 45.6
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 3.8e-46 189.1 267 41.9
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 2.4e-45 186.4 185 54.6
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 4.2e-45 185.7 168 59.5
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 7.8e-44 181.4 233 44.6
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 3.0e-43 179.5 238 42.9
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 6.6e-43 178.3 237 43.9
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 1.2e-41 174.1 153 57.5
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 1.8e-40 170.2 221 43.4
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 1.6e-36 157.1 138 63.0
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 3.5e-36 156.0 176 50.0
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 1.0e-35 154.5 141 54.6
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 1.3e-35 154.1 184 45.1
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 7.3e-34 148.3 136 58.1
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 2.4e-32 143.3 228 39.9
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 7.6e-31 138.3 142 52.8
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 1.3e-30 137.5 95 70.5
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 2.1e-28 130.2 217 41.5
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 1.9e-26 123.6 97 62.9
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 1.2e-23 114.4 136 45.6
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 1.3e-22 110.9 155 41.3
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 6.4e-22 108.6 103 56.3
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 3.2e-21 106.3 112 50.0
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 2.1e-20 103.6 158 38.6
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 2.5e-18 96.7 98 50.0
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 4.8e-17 92.4 108 44.4
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 8.2e-17 91.7 135 42.2
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 4.0e-16 89.4 141 44.0
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 1.0e-14 84.7 185 31.9
DCAR_021652 Daucus carota HOM05D000949 ORTHO05D001276 2.2e-14 83.6 112 40.2
DCAR_026119 Daucus carota HOM05D000323 ORTHO05D000201 3.2e-13 79.7 103 40.8
Ciclev10006356m.g Citrus clementina HOM05D005662 ORTHO05D007004 1.2e-12 77.8 76 52.6
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 1.8e-11 73.9 56 67.9
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 3.0e-11 73.2 73 49.3
FvH4_3g21360 Fragaria vesca HOM05D005731 ORTHO05D012104 2.9e-06 56.6 87 42.5


User provided reference genes

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