Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 3.0e-87 325.1 158 100.0
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 3.0e-79 298.5 155 92.9
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 7.7e-67 257.3 155 78.7
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.0e-63 246.9 155 76.8
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 3.0e-63 245.4 153 75.8
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 5.7e-62 241.1 151 75.5
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 7.4e-62 240.7 145 76.6
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 7.4e-62 240.7 155 76.8
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 1.7e-61 239.6 151 74.2
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 2.2e-61 239.2 153 73.9
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.8e-61 238.8 147 75.5
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 2.8e-61 238.8 147 75.5
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 2.8e-61 238.8 153 74.5
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 3.7e-61 238.4 153 75.2
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 3.7e-61 238.4 154 72.7
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 3.7e-61 238.4 154 72.7
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 3.7e-61 238.4 153 70.6
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 6.3e-61 237.7 147 75.5
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.1e-60 236.9 147 74.8
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 1.8e-60 236.1 148 73.6
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 2.4e-60 235.7 150 74.7
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 3.1e-60 235.3 153 73.9
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 3.1e-60 235.3 147 74.1
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 4.1e-60 235.0 147 75.5
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 7.0e-60 234.2 142 75.4
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 9.1e-60 233.8 155 72.3
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 2.6e-59 232.3 145 75.9
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 3.5e-59 231.9 144 74.3
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 3.5e-59 231.9 147 74.8
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 4.5e-59 231.5 152 71.7
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 4.5e-59 231.5 142 73.9
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 1.0e-58 230.3 153 71.9
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.7e-58 229.6 143 75.5
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 1.7e-58 229.6 144 75.0
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 2.2e-58 229.2 153 68.6
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 2.9e-58 228.8 150 69.3
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 2.9e-58 228.8 150 69.3
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 6.5e-58 227.6 147 72.8
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 8.5e-58 227.3 152 69.7
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 8.5e-58 227.3 152 69.1
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 1.5e-57 226.5 151 70.2
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 1.9e-57 226.1 151 68.2
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 1.9e-57 226.1 151 68.2
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 2.5e-57 225.7 147 70.1
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 2.5e-57 225.7 151 72.2
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 3.2e-57 225.3 153 69.3
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 3.2e-57 225.3 142 70.4
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 4.2e-57 224.9 151 68.2
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 4.2e-57 224.9 153 68.6
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 7.2e-57 224.2 152 69.1
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 9.4e-57 223.8 146 70.5
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 9.4e-57 223.8 146 69.2
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 1.2e-56 223.4 146 68.5
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 1.6e-56 223.0 156 67.3
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 1.6e-56 223.0 149 71.1
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 1.6e-56 223.0 142 71.8
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 1.6e-56 223.0 146 69.2
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 2.1e-56 222.6 153 68.6
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 2.1e-56 222.6 149 75.2
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 2.1e-56 222.6 150 69.3
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 2.7e-56 222.2 151 68.9
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 2.7e-56 222.2 145 69.7
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 2.7e-56 222.2 153 68.6
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 2.7e-56 222.2 155 67.1
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 8.0e-56 220.7 146 69.9
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 8.0e-56 220.7 151 69.5
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 8.0e-56 220.7 151 69.5
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 1.4e-55 219.9 153 68.0
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 1.4e-55 219.9 145 71.0
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 1.8e-55 219.5 149 67.1
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 1.8e-55 219.5 149 73.8
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 3.0e-55 218.8 147 68.7
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 4.0e-55 218.4 144 72.2
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 8.8e-55 217.2 146 69.2
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 8.8e-55 217.2 149 72.5
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 1.5e-54 216.5 149 66.4
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 1.5e-54 216.5 146 67.8
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 2.6e-54 215.7 146 68.5
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 3.3e-54 215.3 142 71.1
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 5.7e-54 214.5 146 69.2
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 1.3e-53 213.4 153 66.0
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 2.2e-53 212.6 153 66.0
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 2.8e-53 212.2 144 68.8
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 1.4e-52 209.9 144 66.0
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 1.4e-52 209.9 142 69.7
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 1.8e-52 209.5 203 54.7
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 1.2e-51 206.8 129 74.4
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 2.0e-51 206.1 147 65.3
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 3.5e-51 205.3 147 66.0
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 5.9e-51 204.5 126 74.6
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 1.3e-50 203.4 159 62.3
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.9e-50 202.2 150 69.3
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 5.0e-50 201.4 144 66.0
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 6.5e-50 201.1 133 70.7
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 6.5e-50 201.1 147 63.9
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 8.5e-50 200.7 139 70.5
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 5.5e-49 198.0 189 53.4
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 7.2e-49 197.6 127 74.0
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 1.2e-48 196.8 155 63.9
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 6.1e-48 194.5 142 62.7
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 8.0e-48 194.1 146 61.6
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.0e-47 193.7 153 64.7
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 1.4e-47 193.4 153 64.1
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.4e-47 193.4 153 64.1
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 1.8e-47 193.0 152 60.5
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 2.3e-47 192.6 138 66.7
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 2.3e-47 192.6 159 61.6
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 5.2e-47 191.4 175 57.1
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 1.5e-46 189.9 146 61.0
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 5.7e-46 188.0 141 61.7
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 7.5e-46 187.6 148 63.5
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 2.2e-45 186.0 132 69.7
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 2.2e-45 186.0 142 64.8
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 1.8e-44 183.0 134 66.4
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 2.4e-44 182.6 131 65.6
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 7.7e-43 177.6 115 68.7
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 7.7e-43 177.6 127 65.4
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 6.5e-42 174.5 142 57.7
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 1.8e-39 166.4 100 77.0
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 8.8e-39 164.1 125 62.4
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 7.5e-38 161.0 102 69.6
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 2.4e-36 156.0 154 48.1
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 5.4e-36 154.8 105 72.4
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.9e-33 146.4 134 56.7
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 2.5e-33 146.0 75 96.0
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 2.5e-33 146.0 75 96.0
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 3.3e-33 145.6 101 66.3
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 4.3e-33 145.2 141 47.5
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 5.6e-33 144.8 143 49.7
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 5.6e-33 144.8 75 94.7
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 2.1e-32 142.9 146 45.9
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.5e-30 136.7 108 59.3
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 2.0e-30 136.3 88 72.7
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 1.4e-28 130.2 144 43.1
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 3.2e-28 129.0 142 43.7
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 3.1e-23 112.5 79 63.3
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 4.0e-23 112.1 106 50.9
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 6.8e-23 111.3 144 44.4
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 4.9e-21 105.1 77 63.6
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 1.2e-19 100.5 84 59.5
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 1.2e-19 100.5 114 40.4
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 6.0e-19 98.2 72 59.7
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 7.8e-19 97.8 152 38.8
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 1.0e-18 97.4 114 36.8
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 3.3e-17 92.4 140 37.9
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 8.1e-16 87.8 127 40.2
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 1.8e-15 86.7 71 59.2
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 8.9e-15 84.3 140 32.1
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 4.4e-14 82.0 60 61.7
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 1.3e-13 80.5 109 40.4
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.3e-13 80.5 128 33.6
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.3e-13 80.5 108 36.1
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 1.1e-12 77.4 80 53.8
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 3.2e-12 75.9 120 35.0
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 1.2e-08 63.9 48 60.4
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 8.1e-08 61.2 77 42.9
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 8.9e-07 57.8 113 33.6
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 5.8e-06 55.1 140 26.4


User provided reference genes

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