Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold47G17673 Striga asiatica HOM05D005603 ORTHO05D006944 1.2e-249 865.9 409 100.0
MSTRG.15764 Avicennia marina HOM05D005603 ORTHO05D006944 3.1e-229 798.1 409 92.4
Migut.L00039 Erythranthe guttata HOM05D005603 ORTHO05D006944 3.3e-223 778.1 409 89.7
QL06p033966 Quercus lobata HOM05D005603 ORTHO05D006944 3.1e-221 771.5 407 89.9
Nitab4.5_0008176g0030 Nicotiana tabacum HOM05D005603 ORTHO05D006944 5.3e-221 770.8 424 86.1
Sopen02g029190 Solanum pennellii HOM05D005603 ORTHO05D006944 5.3e-221 770.8 409 89.0
SalBow8G5567 Salvia bowleyana HOM05D005603 ORTHO05D006944 9.1e-221 770.0 420 87.1
CSS0040106 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 1.6e-220 769.2 409 89.2
HanXRQChr16g0531111 Helianthus annuus HOM05D005603 ORTHO05D006944 3.2e-218 761.5 407 87.0
Oeu035330.1 Olea europaea HOM05D005603 ORTHO05D006944 7.2e-218 760.4 409 87.5
Aqoxy5G01490 Aquilegia oxysepala HOM05D005603 ORTHO05D006944 9.4e-218 760.0 408 87.5
FvH4_1g12160 Fragaria vesca HOM05D005603 ORTHO05D006944 9.4e-218 760.0 409 87.8
TAR628G0819 Trochodendron aralioides HOM05D005603 ORTHO05D006944 1.2e-217 759.6 408 87.7
Hma1.2p1_0743F.1_g211450 Hydrangea macrophylla HOM05D005603 ORTHO05D006944 4.7e-217 757.7 420 86.0
Nn5g29214 Nelumbo nucifera HOM05D005603 ORTHO05D006944 8.0e-217 756.9 409 87.3
Cc07_g10420 Coffea canephora HOM05D005603 ORTHO05D006944 1.4e-216 756.1 397 89.2
MD15G1249000 Malus domestica HOM05D005603 ORTHO05D006944 1.4e-216 756.1 408 87.0
Eucgr.I02369 Eucalyptus grandis HOM05D005603 ORTHO05D006944 2.3e-216 755.4 409 87.0
Prupe.7G165200 Prunus persica HOM05D005603 ORTHO05D006944 2.3e-216 755.4 409 87.3
RcHm_v2.0_Chr2g0099911 Rosa chinensis HOM05D005603 ORTHO05D006944 4.0e-216 754.6 409 87.8
COL.COLO4_21962 Corchorus olitorius HOM05D005603 ORTHO05D006944 5.2e-216 754.2 409 88.3
Glyma.01G168600 Glycine max HOM05D005603 ORTHO05D006944 1.2e-215 753.1 410 87.3
CiPaw.07G056000 Carya illinoinensis HOM05D005603 ORTHO05D006944 2.6e-215 751.9 410 87.3
Nitab4.5_0000912g0020 Nicotiana tabacum HOM05D005603 ORTHO05D006944 7.5e-215 750.4 416 85.6
Sc03g0003440 Simmondsia chinensis HOM05D005603 ORTHO05D006944 9.8e-215 750.0 408 86.5
Manes.02G101300 Manihot esculenta HOM05D005603 ORTHO05D006944 1.3e-214 749.6 408 88.0
CANSAT01G2298 Cannabis sativa HOM05D005603 ORTHO05D006944 2.2e-214 748.8 407 87.7
TWI09G0997 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 2.2e-214 748.8 409 86.1
TPR.G2333 Trifolium pratense HOM05D005603 ORTHO05D006944 4.8e-214 747.7 410 86.6
Gohir.A02G169100 Gossypium hirsutum HOM05D005603 ORTHO05D006944 1.1e-213 746.5 409 87.0
PGSC0003DMG400003547 Solanum tuberosum HOM05D005603 ORTHO05D006944 1.1e-213 746.5 395 88.6
AUR62007651 Chenopodium quinoa HOM05D005603 ORTHO05D006944 1.8e-213 745.7 408 85.0
Gohir.D03G010900 Gossypium hirsutum HOM05D005603 ORTHO05D006944 1.8e-213 745.7 409 86.8
Gorai.003G011300 Gossypium raimondii HOM05D005603 ORTHO05D006944 1.8e-213 745.7 409 86.8
Glyma.11G074800 Glycine max HOM05D005603 ORTHO05D006944 3.1e-213 745.0 410 86.1
ECA246G4842 Erigeron canadensis HOM05D005603 ORTHO05D006944 4.1e-213 744.6 396 87.1
MD02G1111100 Malus domestica HOM05D005603 ORTHO05D006944 5.4e-213 744.2 408 85.5
Phvul.002G111500 Phaseolus vulgaris HOM05D005603 ORTHO05D006944 5.4e-213 744.2 410 86.3
Ca_24898_v3 Cicer arietinum L. HOM05D005603 ORTHO05D006944 7.0e-213 743.8 410 86.1
Thecc.01G023100 Theobroma cacao HOM05D005603 ORTHO05D006944 7.0e-213 743.8 409 87.0
Psat2g155920 Pisum sativum HOM05D005603 ORTHO05D006944 1.2e-212 743.0 410 86.3
VMungo1215G2039 Vigna mungo HOM05D005603 ORTHO05D006944 1.6e-212 742.7 410 85.9
ClCG01G020120 Citrullus lanatus HOM05D005603 ORTHO05D006944 2.7e-212 741.9 409 85.6
TAR376G0194 Trochodendron aralioides HOM05D005603 ORTHO05D006944 2.7e-212 741.9 409 85.6
Peaxi162Scf00083g01233 Petunia axillaris HOM05D005603 ORTHO05D006944 3.5e-212 741.5 402 87.3
Potri.005G117200 Populus trichocarpa HOM05D005603 ORTHO05D006944 3.5e-212 741.5 408 87.0
arahy.Tifrunner.gnm1.ann1.V913IW Arachis hypogaea HOM05D005603 ORTHO05D006944 5.9e-212 740.7 410 86.1
GSVIVG01018824001 Vitis vinifera HOM05D005603 ORTHO05D006944 5.9e-212 740.7 397 88.7
Medtr5g021520 Medicago truncatula HOM05D005603 ORTHO05D006944 7.7e-212 740.3 411 86.1
Ciclev10025760m.g Citrus clementina HOM05D005603 ORTHO05D006944 1.0e-211 740.0 408 85.3
Hund14030 Selenicereus undatus HOM05D005603 ORTHO05D006944 1.3e-211 739.6 408 84.6
PSO541G2355 Papaver somniferum HOM05D005603 ORTHO05D006944 2.9e-211 738.4 409 85.3
PSO675G2068 Papaver somniferum HOM05D005603 ORTHO05D006944 2.9e-211 738.4 409 85.3
MELO3C007885.2 Cucumis melo HOM05D005603 ORTHO05D006944 5.0e-211 737.6 408 85.3
CsaV3_6G046890 Cucumis sativus L. HOM05D005603 ORTHO05D006944 5.0e-211 737.6 408 85.5
arahy.Tifrunner.gnm1.ann1.8YZ064 Arachis hypogaea HOM05D005603 ORTHO05D006944 8.6e-211 736.9 433 82.2
Potri.007G015800 Populus trichocarpa HOM05D005603 ORTHO05D006944 1.1e-210 736.5 409 85.6
DCAR_021493 Daucus carota HOM05D005603 ORTHO05D006944 1.5e-210 736.1 406 85.0
Lsat_1_v5_gn_3_73720 Lactuca sativa HOM05D005603 ORTHO05D006944 1.5e-210 736.1 401 85.8
Lj2g0023828 Lotus japonicus HOM05D005603 ORTHO05D006944 3.3e-210 734.9 415 85.1
Hund16476 Selenicereus undatus HOM05D005603 ORTHO05D006944 4.2e-210 734.6 433 81.8
EL10As8g23850 Beta vulgaris HOM05D005603 ORTHO05D006944 1.6e-209 732.6 403 85.1
CDE05G2538 Ceratophyllum demersum HOM05D005603 ORTHO05D006944 1.8e-208 729.2 409 84.8
Sed0002868 Sechium edule HOM05D005603 ORTHO05D006944 2.3e-208 728.8 409 84.8
THA.LOC104819186 Tarenaya hassleriana HOM05D005603 ORTHO05D006944 6.8e-208 727.2 409 84.1
ATR0620G128 Amborella trichopoda HOM05D005603 ORTHO05D006944 2.0e-207 725.7 409 83.6
Carub.0005s1753 Capsella rubella HOM05D005603 ORTHO05D006944 3.4e-207 724.9 410 82.2
MSTRG.3829 Avicennia marina HOM05D005603 ORTHO05D006944 4.4e-207 724.5 409 84.1
CSS0042462 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 1.7e-206 722.6 408 84.3
AL5G31550 Arabidopsis lyrata HOM05D005603 ORTHO05D006944 4.9e-206 721.1 409 81.9
AT3G51130 Arabidopsis thaliana HOM05D005603 ORTHO05D006944 8.3e-206 720.3 409 82.2
Duzib147G0771 Durio zibethinus HOM05D005603 ORTHO05D006944 8.3e-206 720.3 397 86.9
Thhalv10010418m.g Eutrema salsugineum HOM05D005603 ORTHO05D006944 8.3e-206 720.3 409 81.7
CAN.G358.2 Capsicum annuum HOM05D005603 ORTHO05D006944 1.1e-205 719.9 397 84.9
CSS0001882 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 1.8e-205 719.2 408 83.8
Aa31LG4G19220 Aethionema arabicum HOM05D005603 ORTHO05D006944 2.4e-205 718.8 410 83.2
Rhsim08G0035200 Rhododendron simsii HOM05D005603 ORTHO05D006944 3.5e-204 714.9 413 81.6
FAN28G0526 Fragaria x ananassa HOM05D005603 ORTHO05D006944 1.3e-203 713.0 409 83.6
Sp5g11080 Schrenkiella parvula HOM05D005603 ORTHO05D006944 1.6e-201 706.1 409 81.4
BcaC06g33053 Brassica carinata HOM05D005603 ORTHO05D006944 2.8e-201 705.3 409 80.9
Os06g0714000 Oryza sativa ssp. japonica HOM05D005603 ORTHO05D006944 2.8e-201 705.3 405 82.7
HPP92_025419 Vanilla planifolia HOM05D005603 ORTHO05D006944 2.8e-201 705.3 405 82.0
Sed0017160 Sechium edule HOM05D005603 ORTHO05D006944 1.8e-200 702.6 409 81.9
unitig_32.g11821 Utricularia gibba HOM05D005603 ORTHO05D006944 1.2e-199 699.9 392 85.2
Haze_03808 Corylus avellana HOM05D005603 ORTHO05D006944 1.5e-199 699.5 407 82.6
FAN23G1635 Fragaria x ananassa HOM05D005603 ORTHO05D006944 1.5e-199 699.5 403 83.1
A03p48150 Brassica napus HOM05D005603 ORTHO05D006944 9.2e-197 690.3 393 81.2
BraA03t13922Z Brassica rapa HOM05D005603 ORTHO05D006944 9.2e-197 690.3 393 81.2
CARHR160730 Cardamine hirsuta HOM05D005603 ORTHO05D006944 1.0e-195 686.8 409 78.2
Lj4C215G4 Lonicera japonica HOM05D005603 ORTHO05D006944 6.6e-195 684.1 408 79.7
BolC7t45134H Brassica oleracea HOM05D005603 ORTHO05D006944 1.5e-194 682.9 395 80.8
FAN19G0288 Fragaria x ananassa HOM05D005603 ORTHO05D006944 9.5e-194 680.2 393 82.7
Cpa.g.sc6.214 Carica papaya HOM05D005603 ORTHO05D006944 8.0e-193 677.2 426 78.2
FAN26G2705 Fragaria x ananassa HOM05D005603 ORTHO05D006944 5.8e-191 671.0 386 82.9
TWI53G1238 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 7.5e-191 670.6 371 85.4
C07p46180 Brassica napus HOM05D005603 ORTHO05D006944 6.4e-190 667.5 416 76.4
Sabra05G0096200 Salix brachista HOM05D005603 ORTHO05D006944 1.1e-189 666.8 411 79.8
vmacro22086 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 7.0e-189 664.1 363 84.3
BraA09t39879Z Brassica rapa HOM05D005603 ORTHO05D006944 4.6e-188 661.4 394 78.9
A09p44190 Brassica napus HOM05D005603 ORTHO05D006944 1.0e-187 660.2 394 78.7
BolC8t50258H Brassica oleracea HOM05D005603 ORTHO05D006944 5.1e-187 657.9 394 78.7
BcaB01g00547 Brassica carinata HOM05D005603 ORTHO05D006944 3.4e-183 645.2 382 79.3
Zm00001eb227930 Zea mays HOM05D005603 ORTHO05D006944 6.4e-182 641.0 405 76.3
Duzib264G0505 Durio zibethinus HOM05D005603 ORTHO05D006944 1.4e-181 639.8 409 78.0
Sabra07G0013000 Salix brachista HOM05D005603 ORTHO05D006944 1.0e-179 633.6 410 76.3
vmacro18394 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 5.1e-179 631.3 347 84.1
C08p26410 Brassica napus HOM05D005603 ORTHO05D006944 8.4e-174 614.0 363 79.6
Lalb_Chr16g0377611 Lupinus albus HOM05D005603 ORTHO05D006944 2.5e-170 602.4 345 81.7
Pp3c2_6370 Physcomitrium patens HOM05D005603 ORTHO05D006944 3.1e-168 595.5 402 70.1
Ah.02g124640 Amaranthus hybridus HOM05D005603 ORTHO05D006944 3.4e-167 592.0 402 71.4
AagrBONN_evm.TU.Sc2ySwM_228.543 Anthoceros agrestis HOM05D005603 ORTHO05D006944 1.7e-166 589.7 406 70.2
Dinv40059 Davidia involucrata HOM05D005603 ORTHO05D006944 2.1e-164 582.8 311 87.5
Pp3c10_8990 Physcomitrium patens HOM05D005603 ORTHO05D006944 7.8e-164 580.9 402 67.7
Dinv33602 Davidia involucrata HOM05D005603 ORTHO05D006944 1.7e-163 579.7 312 87.2
SMO117G0153 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 6.6e-163 577.8 401 68.6
Actinidia31012 Actinidia chinensis HOM05D005603 ORTHO05D006944 1.5e-154 550.1 312 83.3
SEGI_22640 Sequoiadendron giganteum HOM05D005603 ORTHO05D006944 1.2e-151 540.4 352 74.1
Mapoly0152s0028 Marchantia polymorpha HOM05D005603 ORTHO05D006944 4.6e-148 528.5 407 63.6
Mapoly0094s0075 Marchantia polymorpha HOM05D005603 ORTHO05D006944 1.1e-144 517.3 399 62.2
Lalb_Chr09g0321921 Lupinus albus HOM05D005603 ORTHO05D006944 3.3e-122 442.6 243 85.6
Solyc02g075630.3 Solanum lycopersicum HOM05D005603 ORTHO05D006944 1.2e-108 397.5 208 89.4
SMO037G0002 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 3.1e-104 382.9 272 66.5
Atru.chr3.766 Acer truncatum HOM05D005603 ORTHO05D006944 1.0e-94 351.3 192 84.4
Migut.H02480 Erythranthe guttata HOM05D005603 ORTHO05D006944 9.5e-93 344.7 378 54.0
Nn015s41468 Nelumbo nucifera HOM05D005603 ORTHO05D006944 4.5e-87 325.9 177 86.4
Actinidia26078 Actinidia chinensis HOM05D005603 ORTHO05D006944 8.6e-86 321.6 224 72.8
Lalb_Chr09g0321931 Lupinus albus HOM05D005603 ORTHO05D006944 3.1e-83 313.2 159 88.1
CBR_g36682 Chara braunii HOM05D005603 ORTHO05D000002 5.0e-78 295.8 230 61.3
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 1.5e-77 294.3 435 39.8
Nn015s41469 Nelumbo nucifera HOM05D005603 ORTHO05D006944 5.4e-72 275.8 152 85.5
BcaC06g33054 Brassica carinata HOM05D005603 ORTHO05D006944 1.4e-59 234.6 145 76.6
CBR_g36680 Chara braunii HOM05D005603 ORTHO05D006944 2.0e-58 230.7 172 63.4
Atru.chr2.40 Acer truncatum HOM05D005603 ORTHO05D006944 3.5e-47 193.4 196 53.6
Actinidia31013 Actinidia chinensis HOM05D005603 ORTHO05D006944 1.2e-31 141.7 72 88.9
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 6.3e-20 102.8 204 39.2
Cfa027245 Carpinus fangiana HOM05D005603 ORTHO05D006944 3.6e-15 87.0 273 28.9
COL.COLO4_32114 Corchorus olitorius HOM05D000931 ORTHO05D002226 4.2e-08 63.5 51 60.8


User provided reference genes

Program Settings