Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 0.0e+00 1414.8 719 100.0
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 6.2e-257 891.0 757 65.8
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 2.5e-253 879.0 744 66.1
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 6.7e-219 764.6 779 57.1
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 1.7e-198 696.8 772 54.0
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 4.2e-197 692.2 786 53.8
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 4.2e-197 692.2 692 56.4
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 1.8e-195 686.8 789 52.1
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 1.3e-193 680.6 760 54.1
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 3.7e-193 679.1 595 62.2
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 1.1e-192 677.6 770 52.3
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 1.3e-190 670.6 754 52.5
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 1.1e-189 667.5 756 52.5
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 2.5e-189 666.4 743 54.0
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 2.8e-188 662.9 808 52.0
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 8.0e-188 661.4 756 54.8
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 1.8e-187 660.2 706 54.7
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 3.2e-184 649.4 741 53.8
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 4.1e-184 649.0 818 50.2
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 5.4e-184 648.7 762 51.2
Duzib187G0315 Durio zibethinus HOM05D006071 ORTHO05D007462 2.0e-183 646.7 757 51.9
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 2.0e-183 646.7 765 52.2
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 5.0e-182 642.1 753 51.8
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 6.6e-182 641.7 746 52.3
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 6.6e-182 641.7 766 53.1
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 1.5e-181 640.6 693 53.8
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 2.8e-180 636.3 783 50.3
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 3.6e-180 636.0 740 51.2
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 6.2e-180 635.2 720 51.8
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 1.1e-179 634.4 783 50.2
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 1.1e-179 634.4 751 51.4
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 2.6e-178 629.8 768 51.3
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 5.8e-178 628.6 783 52.0
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 5.8e-178 628.6 717 52.4
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.7e-177 627.1 773 50.8
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 3.7e-177 625.9 630 56.8
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 6.4e-177 625.2 784 50.5
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 1.9e-176 623.6 704 52.3
GSVIVG01032990001 Vitis vinifera HOM05D006071 ORTHO05D007462 5.4e-176 622.1 755 52.1
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 7.1e-176 621.7 746 51.6
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 7.8e-175 618.2 760 49.6
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 7.8e-175 618.2 672 52.7
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 1.3e-174 617.5 814 48.5
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 3.0e-174 616.3 760 49.3
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 7.3e-173 611.7 613 55.3
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 9.5e-173 611.3 646 54.5
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 9.5e-173 611.3 697 51.1
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 2.1e-172 610.1 725 51.2
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 2.1e-172 610.1 756 49.6
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 3.6e-172 609.4 768 50.5
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 6.2e-172 608.6 648 54.5
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.4e-171 607.4 810 48.4
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 1.8e-171 607.1 762 49.9
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 2.3e-171 606.7 779 48.7
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 2.3e-171 606.7 767 49.0
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 4.0e-171 605.9 757 49.9
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 5.2e-171 605.5 769 48.0
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 6.8e-171 605.1 760 51.1
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 1.7e-169 600.5 755 49.7
Actinidia36244 Actinidia chinensis HOM05D000877 ORTHO05D001509 4.6e-167 592.4 658 52.0
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 1.3e-166 590.9 616 54.7
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 3.9e-166 589.3 754 48.3
Sabra14G0109500 Salix brachista HOM05D006071 ORTHO05D007462 7.3e-165 585.1 782 48.5
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 8.1e-164 581.6 768 47.5
TAR629G1421 Trochodendron aralioides HOM05D006071 ORTHO05D007462 1.1e-163 581.3 766 48.8
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 5.2e-163 578.9 769 47.3
MD09G1003000 Malus domestica HOM05D006071 ORTHO05D007462 8.9e-163 578.2 662 51.5
Hma1.2p1_0421F.1_g149975 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 1.7e-161 573.9 449 64.1
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 2.2e-161 573.5 726 47.5
Thhalv10003691m.g Eutrema salsugineum HOM05D006071 ORTHO05D007462 1.4e-160 570.9 790 47.3
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 1.3e-158 564.3 793 46.7
BcaB07g30217 Brassica carinata HOM05D006071 ORTHO05D007462 1.9e-157 560.5 642 51.4
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 2.5e-157 560.1 604 52.6
Aa31LG2G5830 Aethionema arabicum HOM05D006071 ORTHO05D007462 2.1e-156 557.0 784 46.2
Eucgr.I01601 Eucalyptus grandis HOM05D006071 ORTHO05D007462 1.2e-154 551.2 739 47.9
unitig_0.g2406 Utricularia gibba HOM05D006071 ORTHO05D007462 1.2e-154 551.2 594 54.7
FvH4_6g54271 Fragaria vesca HOM05D006071 ORTHO05D007462 2.6e-154 550.1 653 51.1
THA.LOC104805300 Tarenaya hassleriana HOM05D006071 ORTHO05D007462 9.9e-154 548.1 772 47.3
CARHR147750 Cardamine hirsuta HOM05D006071 ORTHO05D007462 2.9e-153 546.6 790 45.7
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 7.1e-152 542.0 762 46.3
BraA02t08478Z Brassica rapa HOM05D006071 ORTHO05D007462 1.2e-151 541.2 788 45.3
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 1.6e-151 540.8 623 49.0
Sp2g15850 Schrenkiella parvula HOM05D006071 ORTHO05D007462 1.0e-150 538.1 773 46.3
A02p34700 Brassica napus HOM05D006071 ORTHO05D007462 6.6e-150 535.4 789 44.7
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 3.3e-149 533.1 754 44.3
C02p53260 Brassica napus HOM05D006071 ORTHO05D007462 9.6e-149 531.6 786 44.7
BolC2t11398H Brassica oleracea HOM05D006071 ORTHO05D007462 9.6e-149 531.6 783 45.2
AL5G15580 Arabidopsis lyrata HOM05D006071 ORTHO05D007462 4.8e-148 529.3 769 45.1
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 8.1e-148 528.5 782 44.5
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 1.4e-144 517.7 721 45.6
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 6.0e-143 512.3 785 42.7
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 1.5e-138 497.7 760 42.6
Hma1.2p1_0033F.1_g021090 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 7.2e-128 462.2 501 52.7
Atru.chr6.2689 Acer truncatum HOM05D006071 ORTHO05D007462 4.2e-120 436.4 416 56.7
Psat3g093480 Pisum sativum HOM05D006071 ORTHO05D007462 2.3e-118 430.6 498 50.6
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 8.8e-118 428.7 841 37.9
AUR62041072 Chenopodium quinoa HOM05D006071 ORTHO05D007462 1.0e-113 415.2 532 47.7
SMO141G0304 Selaginella moellendorffii HOM05D006071 ORTHO05D007462 3.0e-110 403.7 713 38.7
COL.COLO4_13369 Corchorus olitorius HOM05D006071 ORTHO05D007462 5.0e-105 386.3 674 40.5
Mapoly0006s0082 Marchantia polymorpha HOM05D006071 ORTHO05D007462 6.1e-103 379.4 738 36.3
Pp3c20_8910 Physcomitrium patens HOM05D006071 ORTHO05D007462 8.5e-97 359.0 762 34.8
CSS0035612 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 1.8e-91 341.3 471 45.9
Duzib147G1044 Durio zibethinus HOM05D006071 ORTHO05D007462 5.4e-91 339.7 582 41.2
SHI11389 Sapria himalayana HOM05D006071 ORTHO05D007462 1.6e-87 328.2 491 42.4
CBR_g4363 Chara braunii HOM05D006071 ORTHO05D007462 1.9e-72 278.1 799 29.3
Solyc02g094510.4 Solanum lycopersicum HOM05D006071 ORTHO05D007462 1.9e-72 278.1 321 52.0
AagrBONN_evm.TU.Sc2ySwM_344.4297 Anthoceros agrestis HOM05D006071 ORTHO05D007462 4.0e-62 243.8 754 31.4
Psat2g052360 Pisum sativum HOM05D006071 ORTHO05D007462 3.9e-49 200.7 464 35.3
AUR62041071 Chenopodium quinoa HOM05D006071 ORTHO05D007462 6.2e-47 193.4 234 53.8
Psat2g087400 Pisum sativum HOM05D006071 ORTHO05D007462 1.1e-46 192.6 327 38.5
CDE05G1324 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 5.4e-43 180.3 235 44.7
HanXRQChr17g0550971 Helianthus annuus HOM05D006071 ORTHO05D007462 4.6e-42 177.2 189 51.3
MCO15G395 Micromonas commoda HOM05D006071 ORTHO05D007462 4.9e-36 157.1 558 25.8
Cre03.g144687 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 2.5e-32 144.8 619 23.7
HanXRQChr17g0550951 Helianthus annuus HOM05D006071 ORTHO05D007462 3.4e-29 134.4 241 45.6
Sc07g0003760 Simmondsia chinensis HOM05D006071 ORTHO05D007462 1.9e-24 118.6 114 53.5
Psat0s2046g0080 Pisum sativum HOM05D006071 ORTHO05D007462 3.3e-24 117.9 180 44.4
Atru.chr6.2690 Acer truncatum HOM05D006071 ORTHO05D007462 5.8e-21 107.1 198 42.4
Psat0s2046g0120 Pisum sativum HOM05D006071 ORTHO05D007462 7.1e-19 100.1 94 55.3
Lj1g0013684 Lotus japonicus HOM05D006071 ORTHO05D007462 1.8e-17 95.5 105 51.4
Psat2g087520 Pisum sativum HOM05D006071 ORTHO05D007462 2.1e-15 88.6 155 43.2
Actinidia09845 Actinidia chinensis HOM05D006071 ORTHO05D007462 4.5e-13 80.9 115 40.0
Cre16.g681251 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 1.3e-12 79.3 168 29.2
Atru.chr6.2688 Acer truncatum HOM05D006071 ORTHO05D007462 1.4e-11 75.9 96 52.1
unitig_0.g2405 Utricularia gibba HOM05D006071 ORTHO05D007462 2.5e-11 75.1 100 45.0
Actinidia09844 Actinidia chinensis HOM05D006071 ORTHO05D007462 1.3e-09 69.3 80 55.0
CDE05G2071 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 2.2e-07 62.0 122 40.2
Nitab4.5_0000207g0130 Nicotiana tabacum HOM05D000463 ORTHO05D001294 6.3e-07 60.5 96 32.3
AL6G49390 Arabidopsis lyrata HOM05D000463 ORTHO05D001294 1.4e-06 59.3 98 32.7
Thhalv10028914m.g Eutrema salsugineum HOM05D000463 ORTHO05D001294 2.4e-06 58.5 101 33.7
Nitab4.5_0004411g0010 Nicotiana tabacum HOM05D000463 ORTHO05D001294 3.1e-06 58.2 56 44.6
unitig_578.g16702 Utricularia gibba HOM05D000463 ORTHO05D008669 3.1e-06 58.2 82 36.6
AUR62017010 Chenopodium quinoa HOM05D000463 ORTHO05D001294 4.1e-06 57.8 52 46.2
Nitab4.5_0002158g0130 Nicotiana tabacum HOM05D000463 ORTHO05D001294 4.1e-06 57.8 56 44.6
Oeu019332.1 Olea europaea HOM05D000463 ORTHO05D001294 4.1e-06 57.8 56 41.1
THA.LOC104799924 Tarenaya hassleriana HOM05D000463 ORTHO05D001294 4.1e-06 57.8 66 39.4
MSTRG.7331 Avicennia marina HOM05D000463 ORTHO05D001294 5.3e-06 57.4 56 42.9
Gohir.D04G143800 Gossypium hirsutum HOM05D000463 ORTHO05D001294 5.3e-06 57.4 56 44.6
Gorai.012G129300 Gossypium raimondii HOM05D000463 ORTHO05D001294 5.3e-06 57.4 56 44.6
Atru.chr6.3003 Acer truncatum HOM05D000463 ORTHO05D001294 6.9e-06 57.0 86 33.7
Ah.09g237320 Amaranthus hybridus HOM05D000463 ORTHO05D001294 6.9e-06 57.0 52 46.2
EL10Ac8g20376 Beta vulgaris HOM05D000463 ORTHO05D001294 6.9e-06 57.0 52 46.2
Nitab4.5_0013630g0020 Nicotiana tabacum HOM05D000463 ORTHO05D001294 6.9e-06 57.0 56 42.9
Ah.14g089430 Amaranthus hybridus HOM05D000463 ORTHO05D001294 9.1e-06 56.6 52 46.2
MSTRG.14363 Avicennia marina HOM05D000463 ORTHO05D001294 9.1e-06 56.6 56 41.1


User provided reference genes

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