Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold47G17582 Striga asiatica HOM05D004164 ORTHO05D004891 2.1e-91 339.0 165 100.0
SGA_v2.0_scaffold48G17919 Striga asiatica HOM05D004164 ORTHO05D004891 3.7e-64 248.4 164 78.7
SGA_v2.0_scaffold72G24132 Striga asiatica HOM05D004164 ORTHO05D004891 7.6e-25 117.9 70 87.1
Oeu007975.1 Olea europaea HOM05D004164 ORTHO05D004891 2.5e-12 76.3 50 74.0
Hma1.2p1_0784F.1_g217100 Hydrangea macrophylla HOM05D004164 ORTHO05D004891 3.3e-12 75.9 50 74.0
TPR.G10321 Trifolium pratense HOM05D004164 ORTHO05D004891 7.4e-12 74.7 50 74.0
Atru.chr6.1169 Acer truncatum HOM05D004164 ORTHO05D004891 1.3e-11 73.9 54 64.8
Cc02_g21290 Coffea canephora HOM05D004164 ORTHO05D004891 1.3e-11 73.9 50 72.0
Peaxi162Scf01060g00013 Petunia axillaris HOM05D004164 ORTHO05D004891 1.3e-11 73.9 50 72.0
Cfa005671 Carpinus fangiana HOM05D004164 ORTHO05D004891 1.6e-11 73.6 50 72.0
Migut.B00589 Erythranthe guttata HOM05D004164 ORTHO05D004891 1.6e-11 73.6 50 70.0
Potri.017G051800 Populus trichocarpa HOM05D004164 ORTHO05D004891 1.6e-11 73.6 50 72.0
Sabra17G0043400 Salix brachista HOM05D004164 ORTHO05D004891 1.6e-11 73.6 50 72.0
SabraUnG0002700 Salix brachista HOM05D004164 ORTHO05D004891 1.6e-11 73.6 50 72.0
arahy.Tifrunner.gnm1.ann1.IF3X13 Arachis hypogaea HOM05D004164 ORTHO05D004891 2.1e-11 73.2 50 70.0
THA.LOC104799917 Tarenaya hassleriana HOM05D004164 ORTHO05D004891 2.1e-11 73.2 50 70.0
Thecc.02G135100 Theobroma cacao HOM05D004164 ORTHO05D004891 2.1e-11 73.2 48 75.0
arahy.Tifrunner.gnm1.ann1.XH6BES Arachis hypogaea HOM05D004164 ORTHO05D004891 2.8e-11 72.8 50 70.0
Ciclev10028812m.g Citrus clementina HOM05D004164 ORTHO05D004891 2.8e-11 72.8 50 70.0
Haze_10597 Corylus avellana HOM05D004164 ORTHO05D004891 2.8e-11 72.8 44 79.5
Nitab4.5_0002401g0010 Nicotiana tabacum HOM05D004164 ORTHO05D004891 2.8e-11 72.8 50 72.0
Psat5g128640 Pisum sativum HOM05D004164 ORTHO05D004891 3.7e-11 72.4 50 72.0
VMungo0540G2402 Vigna mungo HOM05D004164 ORTHO05D004891 3.7e-11 72.4 50 72.0
Eucgr.G00847 Eucalyptus grandis HOM05D004164 ORTHO05D004891 4.8e-11 72.0 50 70.0
Lj5A235T51 Lonicera japonica HOM05D004164 ORTHO05D004891 4.8e-11 72.0 50 72.0
Lj6g0000010 Lotus japonicus HOM05D004164 ORTHO05D004891 4.8e-11 72.0 51 68.6
PSO210G2683 Papaver somniferum HOM05D004164 ORTHO05D004891 4.8e-11 72.0 50 70.0
vmacro01837 Vaccinium macrocarpon HOM05D004164 ORTHO05D004891 4.8e-11 72.0 49 71.4
DCAR_001777 Daucus carota HOM05D004164 ORTHO05D004891 6.2e-11 71.6 50 72.0
Dinv24178 Davidia involucrata HOM05D004164 ORTHO05D004891 6.2e-11 71.6 50 72.0
Medtr3g069190 Medicago truncatula HOM05D004164 ORTHO05D004891 8.1e-11 71.2 50 68.0
Sc08g0003530 Simmondsia chinensis HOM05D004164 ORTHO05D004891 8.1e-11 71.2 53 64.2
Actinidia24002 Actinidia chinensis HOM05D004164 ORTHO05D004891 1.1e-10 70.9 50 70.0
ECA234G4615 Erigeron canadensis HOM05D004164 ORTHO05D004891 1.1e-10 70.9 50 66.0
Gohir.A12G015600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 1.1e-10 70.9 50 68.0
Gohir.D12G015900 Gossypium hirsutum HOM05D004164 ORTHO05D004891 1.1e-10 70.9 50 68.0
Gorai.008G016000 Gossypium raimondii HOM05D004164 ORTHO05D004891 1.1e-10 70.9 50 68.0
Manes.07G033800 Manihot esculenta HOM05D004164 ORTHO05D004891 1.1e-10 70.9 50 68.0
TWI14G1169 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 1.1e-10 70.9 50 68.0
Duzib132G1201 Durio zibethinus HOM05D004164 ORTHO05D004891 1.4e-10 70.5 48 70.8
MSTRG.20292 Avicennia marina HOM05D004164 ORTHO05D004891 1.8e-10 70.1 50 68.0
Ca_16502_v3 Cicer arietinum L. HOM05D004164 ORTHO05D004891 1.8e-10 70.1 50 70.0
FAN15G1714 Fragaria x ananassa HOM05D004164 ORTHO05D004891 1.8e-10 70.1 50 68.0
Lsat_1_v5_gn_5_108141 Lactuca sativa HOM05D004164 ORTHO05D004891 1.8e-10 70.1 50 66.0
Rhsim11G0139400 Rhododendron simsii HOM05D004164 ORTHO05D004891 1.8e-10 70.1 47 72.3
TAR381G0722 Trochodendron aralioides HOM05D004164 ORTHO05D004891 1.8e-10 70.1 48 68.8
CiPaw.05G034200 Carya illinoinensis HOM05D004164 ORTHO05D004891 2.4e-10 69.7 50 68.0
FAN18G3873 Fragaria x ananassa HOM05D004164 ORTHO05D004891 2.4e-10 69.7 50 68.0
HanXRQChr10g0291731 Helianthus annuus HOM05D004164 ORTHO05D004891 2.4e-10 69.7 50 64.0
PGR042G3604 Punica granatum HOM05D004164 ORTHO05D004891 2.4e-10 69.7 49 67.3
ATR0782G002 Amborella trichopoda HOM05D004164 ORTHO05D004891 4.0e-10 68.9 48 68.8
CSS0002795 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 4.0e-10 68.9 49 69.4
CSS0040430 Camellia sinensis var. sinensis HOM05D004164 ORTHO05D004891 4.0e-10 68.9 49 69.4
CANSAT11G1236 Cannabis sativa HOM05D004164 ORTHO05D004891 4.0e-10 68.9 50 64.0
Lj6g0021052 Lotus japonicus HOM05D004164 ORTHO05D004891 4.0e-10 68.9 50 68.0
Phvul.006G205400 Phaseolus vulgaris HOM05D004164 ORTHO05D004891 4.0e-10 68.9 51 66.7
Prupe.8G064000 Prunus persica HOM05D004164 ORTHO05D004891 4.0e-10 68.9 48 70.8
SGA_v2.0_scaffold83G26314 Striga asiatica HOM05D004164 ORTHO05D004891 5.3e-10 68.6 44 72.7
Zm00001eb033580 Zea mays HOM05D004164 ORTHO05D004891 5.3e-10 68.6 49 67.3
Aqoxy6G02071 Aquilegia oxysepala HOM05D004164 ORTHO05D004891 6.9e-10 68.2 50 64.0
MD05G1043200 Malus domestica HOM05D004164 ORTHO05D004891 6.9e-10 68.2 44 75.0
Nitab4.5_0000863g0200 Nicotiana tabacum HOM05D004164 ORTHO05D004891 6.9e-10 68.2 44 75.0
AUR62010154 Chenopodium quinoa HOM05D004164 ORTHO05D004891 9.0e-10 67.8 50 64.0
Glyma.08G178100 Glycine max HOM05D004164 ORTHO05D004891 9.0e-10 67.8 50 68.0
Lj4g0000280 Lotus japonicus HOM05D004164 ORTHO05D004891 9.0e-10 67.8 50 62.0
QL11p022503 Quercus lobata HOM05D004164 ORTHO05D004891 9.0e-10 67.8 48 68.8
RcHm_v2.0_Chr6g0271551 Rosa chinensis HOM05D004164 ORTHO05D004891 9.0e-10 67.8 50 66.0
RcHm_v2.0_Chr6g0271711 Rosa chinensis HOM05D004164 ORTHO05D004891 9.0e-10 67.8 50 66.0
SalBow5G1609 Salvia bowleyana HOM05D004164 ORTHO05D004891 9.0e-10 67.8 40 80.0
SalBow5G4318 Salvia bowleyana HOM05D004164 ORTHO05D004891 9.0e-10 67.8 40 80.0
AUR62013150 Chenopodium quinoa HOM05D004164 ORTHO05D004891 1.2e-09 67.4 48 66.7
Sopen01g047880 Solanum pennellii HOM05D004164 ORTHO05D004891 1.2e-09 67.4 50 68.0
PGSC0003DMG400012550 Solanum tuberosum HOM05D004164 ORTHO05D004891 1.2e-09 67.4 50 68.0
TWI59G0238 Tripterygium wilfordii HOM05D004164 ORTHO05D004891 1.2e-09 67.4 44 72.7
GSVIVG01015759001 Vitis vinifera HOM05D004164 ORTHO05D004891 1.2e-09 67.4 50 60.0
EL10Ac9g21504 Beta vulgaris HOM05D004164 ORTHO05D004891 1.5e-09 67.0 48 66.7
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 1.5e-09 67.0 38 76.3
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 1.5e-09 67.0 38 78.9
Aa31LG1G17650 Aethionema arabicum HOM05D004164 ORTHO05D004891 2.6e-09 66.2 50 62.0
Ah.01g022180 Amaranthus hybridus HOM05D004164 ORTHO05D004891 3.4e-09 65.9 48 62.5
Thhalv10004559m.g Eutrema salsugineum HOM05D004164 ORTHO05D004891 3.4e-09 65.9 50 66.0
Os08g0485400 Oryza sativa ssp. japonica HOM05D004164 ORTHO05D004891 3.4e-09 65.9 48 62.5
CAN.G523.53 Capsicum annuum HOM05D004164 ORTHO05D004891 5.8e-09 65.1 54 59.3
CsaV3_7G006720 Cucumis sativus L. HOM05D004164 ORTHO05D004891 5.8e-09 65.1 50 64.0
Lalb_Chr20g0122971 Lupinus albus HOM05D004164 ORTHO05D004891 5.8e-09 65.1 50 62.0
Hund00072 Selenicereus undatus HOM05D004164 ORTHO05D004891 5.8e-09 65.1 48 62.5
Carub.0008s2504 Capsella rubella HOM05D004164 ORTHO05D004891 7.6e-09 64.7 50 64.0
Sp2g27310 Schrenkiella parvula HOM05D004164 ORTHO05D004891 7.6e-09 64.7 50 64.0
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 1.3e-08 63.9 38 73.7
BcaC01g02680 Brassica carinata HOM05D004164 ORTHO05D004891 1.3e-08 63.9 50 64.0
C03p62030 Brassica napus HOM05D004164 ORTHO05D004891 1.3e-08 63.9 50 64.0
BolC3t18463H Brassica oleracea HOM05D004164 ORTHO05D004891 1.3e-08 63.9 50 64.0
HPP92_004281 Vanilla planifolia HOM05D004164 ORTHO05D004891 2.2e-08 63.2 48 60.4
AT5G64250 Arabidopsis thaliana HOM05D004164 ORTHO05D004891 2.9e-08 62.8 47 66.0
MELO3C018623.2 Cucumis melo HOM05D004164 ORTHO05D004891 2.9e-08 62.8 50 62.0
Sed0011830 Sechium edule HOM05D004164 ORTHO05D004891 2.9e-08 62.8 51 58.8
ClCG09G015620 Citrullus lanatus HOM05D004164 ORTHO05D004891 3.8e-08 62.4 50 64.0
Solyc01g105370.4 Solanum lycopersicum HOM05D004164 ORTHO05D004891 3.8e-08 62.4 50 66.0
CARHR278160 Cardamine hirsuta HOM05D004164 ORTHO05D004891 4.9e-08 62.0 48 64.6
BcaB02g09775 Brassica carinata HOM05D004164 ORTHO05D004891 6.5e-08 61.6 50 62.0
A06p30940 Brassica napus HOM05D004164 ORTHO05D004891 6.5e-08 61.6 50 62.0
BraA06t26033Z Brassica rapa HOM05D004164 ORTHO05D004891 6.5e-08 61.6 50 62.0
Gohir.A04G114200 Gossypium hirsutum HOM05D004164 ORTHO05D004891 8.4e-08 61.2 48 62.5
AL8G41570 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 1.1e-07 60.8 47 63.8
AL8G41600 Arabidopsis lyrata HOM05D004164 ORTHO05D004891 1.1e-07 60.8 47 63.8
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 3.2e-07 59.3 38 65.8
Pp3c2_200 Physcomitrium patens HOM05D004164 ORTHO05D004891 4.2e-07 58.9 47 61.7
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 5.5e-07 58.5 38 68.4
SMO143G0159 Selaginella moellendorffii HOM05D004164 ORTHO05D004891 7.1e-07 58.2 44 59.1
Gohir.D04G155600 Gossypium hirsutum HOM05D004164 ORTHO05D004891 9.3e-07 57.8 40 67.5
Gorai.012G142600 Gossypium raimondii HOM05D004164 ORTHO05D004891 9.3e-07 57.8 40 67.5
MBI02_g02172_MAGBIO Magnolia biondii HOM05D004164 ORTHO05D004891 9.3e-07 57.8 49 57.1
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 9.3e-07 57.8 38 63.2
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 1.6e-06 57.0 37 67.6
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 2.1e-06 56.6 38 65.8
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 2.7e-06 56.2 38 65.8
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 2.7e-06 56.2 38 65.8
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 3.5e-06 55.8 38 63.2
TAR365G1146 Trochodendron aralioides HOM05D004164 ORTHO05D004891 7.9e-06 54.7 41 61.0


User provided reference genes

Program Settings