Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 2277.3 1185 100.0
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1986.8 1092 91.9
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1960.3 1100 89.0
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1952.2 1100 88.7
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1922.9 1093 87.8
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 1910.2 1090 87.8
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 1907.9 1100 87.0
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 1904.0 1094 87.5
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1902.5 1099 86.8
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1902.5 1099 86.8
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1901.3 1097 87.1
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1900.2 1097 87.0
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1890.9 1093 86.5
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1889.8 1100 85.9
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1886.3 1145 83.7
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1880.1 1098 85.1
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 1880.1 1098 85.2
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 1879.8 1099 85.4
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1878.2 1090 86.4
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1872.8 1091 85.8
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1870.5 1133 84.5
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1870.1 1096 84.9
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1867.8 1096 85.1
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1864.4 1100 84.6
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1862.4 1099 84.2
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1860.9 1100 84.1
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1857.4 1097 84.8
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1856.6 1100 84.5
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 1854.3 1102 83.9
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1851.6 1101 83.7
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1851.3 1093 85.0
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1850.1 1099 84.4
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1850.1 1096 83.9
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1848.9 1099 83.8
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1848.6 1090 85.1
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1848.2 1100 84.2
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1845.9 1101 83.7
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1844.7 1090 86.1
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1843.9 1099 82.9
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1841.2 1099 83.8
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1840.5 1098 83.2
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1840.5 1100 84.1
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1840.1 1095 84.3
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1840.1 1099 83.2
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1838.2 1103 83.7
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1836.6 1098 83.5
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1835.8 1097 83.4
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1833.9 1099 83.2
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1833.5 1097 83.4
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1833.5 1097 84.1
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1830.1 1092 83.4
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1828.5 1095 82.6
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1827.0 1098 83.7
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1827.0 1090 83.9
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1826.2 1129 82.8
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1824.3 1102 81.9
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1823.1 1098 83.1
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1822.0 1094 82.7
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1821.2 1092 82.3
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1820.8 1136 81.7
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1820.8 1099 82.8
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1818.9 1092 83.3
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1818.9 1094 82.9
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1818.9 1090 83.3
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1818.5 1098 83.0
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1816.6 1105 81.9
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1815.4 1136 81.2
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1813.9 1094 82.1
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1812.3 1102 82.0
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1810.0 1103 82.0
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1809.7 1101 82.7
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1807.7 1102 81.8
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1804.6 1099 82.2
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1803.1 1100 81.5
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1803.1 1103 81.5
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1803.1 1099 82.2
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1801.9 1102 81.3
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1801.6 1099 82.0
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1799.3 1101 81.4
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1798.5 1100 81.5
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1798.5 1100 81.5
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1797.7 1102 81.3
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1797.3 1100 81.4
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1796.2 1103 81.1
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1793.5 1101 81.2
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1783.5 1090 82.1
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1781.5 1093 82.3
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1753.0 1097 81.1
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1746.5 1105 80.0
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1726.8 1292 72.8
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1709.1 1122 78.1
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1691.0 1067 80.2
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1676.0 1102 75.3
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1637.5 1092 75.4
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1635.2 1093 75.0
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1573.5 920 84.6
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1563.5 1096 70.0
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1546.2 1102 70.0
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1533.5 1089 73.6
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1465.7 875 83.1
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1444.1 847 85.5
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1427.2 1093 66.3
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1410.2 1104 64.0
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1373.6 1108 63.2
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1371.3 838 82.0
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1364.0 1108 62.7
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1352.8 1110 61.4
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1313.9 799 82.5
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1266.5 797 79.2
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1165.2 718 79.4
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 0.0e+00 1155.2 695 85.9
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 8.9e-309 1063.9 859 61.7
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 7.8e-305 1050.8 1106 48.2
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 2.4e-290 1002.7 576 88.7
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 4.3e-279 965.3 744 69.5
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 7.3e-279 964.5 584 80.1
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 7.3e-271 937.9 599 81.0
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 5.8e-268 928.3 546 86.6
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 3.8e-251 872.5 627 71.3
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 2.5e-250 869.8 519 81.9
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 8.7e-248 861.3 520 80.4
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 5.5e-218 762.3 470 78.5
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 9.4e-210 734.9 406 87.7
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 5.2e-200 702.6 404 84.4
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 3.0e-147 527.3 357 76.2
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 1.0e-126 459.1 280 81.4
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 2.5e-109 401.4 378 54.5
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 2.9e-94 351.3 215 79.1
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 1.0e-86 326.2 195 84.6
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 6.2e-60 237.3 168 73.2
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 9.2e-48 196.8 143 73.4
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 6.0e-47 194.1 117 88.9
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 3.9e-38 164.9 87 93.1
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 3.3e-37 161.8 103 83.5
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 2.1e-36 159.1 109 78.9
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 9.0e-35 153.7 78 92.3
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 1.5e-34 152.9 96 84.4
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 3.4e-18 98.6 110 46.4
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 4.5e-18 98.2 132 40.9
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 1.6e-15 89.7 96 55.2
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 1.1e-11 77.0 51 74.5
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 2.4e-11 75.9 51 72.5
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 1.5e-10 73.2 51 68.6
SGA_v2.0_scaffold120G32852 Striga asiatica HOM05D006860 ORTHO05D009547 5.5e-08 64.7 42 83.3
SGA_v2.0_scaffold16G07543 Striga asiatica HOM05D006860 ORTHO05D009547 2.1e-07 62.8 45 75.6
SGA_v2.0_scaffold191G40457 Striga asiatica HOM05D000592 ORTHO05D001485 2.3e-06 59.3 66 62.1


User provided reference genes

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