Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold47G17572 Striga asiatica HOM05D000135 ORTHO05D000816 6.5e-146 521.2 363 100.0
SGA_v2.0_scaffold47G17571 Striga asiatica HOM05D000135 ORTHO05D000816 1.3e-16 91.7 49 87.8
SalBow1G3513 Salvia bowleyana HOM05D016915 ORTHO05D000816 7.0e-15 85.9 50 76.0
SalBow7G4318 Salvia bowleyana HOM05D016915 ORTHO05D000816 1.2e-14 85.1 49 77.6
SalBow1G7946 Salvia bowleyana HOM05D000135 ORTHO05D000816 1.6e-14 84.7 50 78.0
SalBow7G1515 Salvia bowleyana HOM05D000135 ORTHO05D000816 1.6e-14 84.7 50 78.0
SalBow1G2517 Salvia bowleyana HOM05D016915 ORTHO05D000816 3.5e-14 83.6 50 76.0
SalBow7G4752 Salvia bowleyana HOM05D016915 ORTHO05D000816 3.5e-14 83.6 50 76.0
Migut.K01450 Erythranthe guttata HOM05D000135 ORTHO05D000816 1.9e-12 77.8 50 74.0
Migut.F00079 Erythranthe guttata HOM05D016915 ORTHO05D000816 2.5e-12 77.4 44 79.5
Migut.K01452 Erythranthe guttata HOM05D016915 ORTHO05D000816 3.3e-12 77.0 50 74.0
Migut.K01451 Erythranthe guttata HOM05D000135 ORTHO05D000816 4.3e-12 76.6 49 75.5
MSTRG.3087 Avicennia marina HOM05D000135 ORTHO05D000816 9.5e-12 75.5 50 72.0
Rhsim08G0044100 Rhododendron simsii HOM05D000135 ORTHO05D000816 1.8e-10 71.2 50 66.0
Actinidia05909 Actinidia chinensis HOM05D000135 ORTHO05D000816 2.3e-10 70.9 50 64.0
PGSC0003DMG400005909 Solanum tuberosum HOM05D000135 ORTHO05D000816 6.8e-10 69.3 48 64.6
Atru.chr6.2532 Acer truncatum HOM05D000135 ORTHO05D000816 8.9e-10 68.9 50 58.0
Sopen06g030230 Solanum pennellii HOM05D000135 ORTHO05D000816 1.2e-09 68.6 48 64.6
Gohir.D04G078000 Gossypium hirsutum HOM05D000135 ORTHO05D000816 1.5e-09 68.2 50 56.0
Gorai.012G087800 Gossypium raimondii HOM05D000135 ORTHO05D000816 1.5e-09 68.2 50 56.0
Solyc06g073830.1 Solanum lycopersicum HOM05D000135 ORTHO05D000816 1.5e-09 68.2 48 64.6
CAN.G1463.22 Capsicum annuum HOM05D000135 ORTHO05D000816 2.0e-09 67.8 48 64.6
Cc07_g00660 Coffea canephora HOM05D000135 ORTHO05D000816 2.0e-09 67.8 50 60.0
Lj7C609T6 Lonicera japonica HOM05D000135 ORTHO05D000816 2.0e-09 67.8 48 60.4
Manes.17G104400 Manihot esculenta HOM05D000135 ORTHO05D000816 2.6e-09 67.4 46 60.9
Eucgr.J02318 Eucalyptus grandis HOM05D000135 ORTHO05D000816 3.4e-09 67.0 47 63.8
Gohir.A05G339500 Gossypium hirsutum HOM05D000135 ORTHO05D000816 3.4e-09 67.0 50 56.0
MD06G1143500 Malus domestica HOM05D000135 ORTHO05D000816 3.4e-09 67.0 50 62.0
TWI12G0256 Tripterygium wilfordii HOM05D000135 ORTHO05D000816 3.4e-09 67.0 50 60.0
Cfa021347 Carpinus fangiana HOM05D000135 ORTHO05D000816 4.4e-09 66.6 49 61.2
unitig_748.g7057 Utricularia gibba HOM05D000135 ORTHO05D000816 4.4e-09 66.6 51 66.7
Nitab4.5_0000875g0030 Nicotiana tabacum HOM05D000135 ORTHO05D000816 7.5e-09 65.9 48 62.5
Nitab4.5_0002183g0010 Nicotiana tabacum HOM05D000135 ORTHO05D000816 7.5e-09 65.9 48 62.5
CANSAT64G0052 Cannabis sativa HOM05D000135 ORTHO05D000816 9.8e-09 65.5 50 58.0
Duzib147G0709 Durio zibethinus HOM05D000135 ORTHO05D000816 9.8e-09 65.5 50 56.0
Oeu035216.1 Olea europaea HOM05D000135 ORTHO05D000816 9.8e-09 65.5 50 58.0
FvH4_6g53150 Fragaria vesca HOM05D000135 ORTHO05D000816 1.3e-08 65.1 50 56.0
FAN14G0778 Fragaria x ananassa HOM05D000135 ORTHO05D000816 1.3e-08 65.1 50 56.0
Lju41C51T3 Lonicera japonica HOM05D000135 ORTHO05D000816 1.3e-08 65.1 49 57.1
MD17G1014200 Malus domestica HOM05D000135 ORTHO05D000816 1.3e-08 65.1 50 56.0
Peaxi162Scf00098g00156 Petunia axillaris HOM05D000135 ORTHO05D000816 1.3e-08 65.1 46 63.0
Dinv33354 Davidia involucrata HOM05D000135 ORTHO05D000816 1.7e-08 64.7 50 58.0
Hma1.2p1_1219F.1_g267940 Hydrangea macrophylla HOM05D000135 ORTHO05D000816 1.7e-08 64.7 50 58.0
Manes.15G159100 Manihot esculenta HOM05D000135 ORTHO05D000816 1.7e-08 64.7 46 60.9
Nitab4.5_0002498g0070 Nicotiana tabacum HOM05D000135 ORTHO05D000816 1.7e-08 64.7 44 65.9
Nitab4.5_0007815g0080 Nicotiana tabacum HOM05D000135 ORTHO05D000816 1.7e-08 64.7 44 65.9
Potri.001G332900 Populus trichocarpa HOM05D000135 ORTHO05D000816 1.7e-08 64.7 48 58.3
TPR.G39344 Trifolium pratense HOM05D000135 ORTHO05D000816 1.7e-08 64.7 50 58.0
Ciclev10018267m.g Citrus clementina HOM05D000135 ORTHO05D000816 2.2e-08 64.3 49 55.1
Eucgr.B00127 Eucalyptus grandis HOM05D000135 ORTHO05D000816 2.2e-08 64.3 44 65.9
MD09G1013600 Malus domestica HOM05D000135 ORTHO05D000816 2.9e-08 63.9 50 56.0
MD14G1158700 Malus domestica HOM05D000135 ORTHO05D000816 2.9e-08 63.9 50 60.0
GSVIVG01010378001 Vitis vinifera HOM05D000135 ORTHO05D000816 2.9e-08 63.9 44 61.4
CSS0033756 Camellia sinensis var. sinensis HOM05D000135 ORTHO05D000816 3.7e-08 63.5 46 60.9
COL.COLO4_17166 Corchorus olitorius HOM05D000135 ORTHO05D000816 3.7e-08 63.5 48 56.2
Sabra16G0213700 Salix brachista HOM05D000135 ORTHO05D000816 3.7e-08 63.5 50 52.0
Sabra16G0213800 Salix brachista HOM05D000135 ORTHO05D000816 3.7e-08 63.5 50 52.0
Solyc11g071740.2 Solanum lycopersicum HOM05D000135 ORTHO05D000816 3.7e-08 63.5 44 63.6
Sopen11g029410 Solanum pennellii HOM05D000135 ORTHO05D000816 3.7e-08 63.5 44 63.6
PGSC0003DMG400040538 Solanum tuberosum HOM05D000135 ORTHO05D000816 3.7e-08 63.5 44 63.6
PGSC0003DMG400045603 Solanum tuberosum HOM05D000135 ORTHO05D000816 3.7e-08 63.5 44 63.6
GSVIVG01010383001 Vitis vinifera HOM05D000135 ORTHO05D000816 3.7e-08 63.5 44 61.4
Oeu035215.1 Olea europaea HOM05D000135 ORTHO05D000816 4.9e-08 63.2 47 57.4
Sc07g0004160 Simmondsia chinensis HOM05D000135 ORTHO05D000816 4.9e-08 63.2 47 59.6
PGSC0003DMG400002993 Solanum tuberosum HOM05D000135 ORTHO05D000816 4.9e-08 63.2 44 63.6
CiPaw.03G053600 Carya illinoinensis HOM05D000135 ORTHO05D000816 6.4e-08 62.8 51 56.9
Rhsim10G0007700 Rhododendron simsii HOM05D000135 ORTHO05D000816 8.3e-08 62.4 48 58.3
Rhsim10G0007900 Rhododendron simsii HOM05D000135 ORTHO05D000816 8.3e-08 62.4 48 58.3
Thecc.04G033300 Theobroma cacao HOM05D000135 ORTHO05D000816 8.3e-08 62.4 50 52.0
Haze_14848 Corylus avellana HOM05D000135 ORTHO05D000816 1.1e-07 62.0 45 60.0
Peaxi162Scf00259g00126 Petunia axillaris HOM05D000135 ORTHO05D000816 1.1e-07 62.0 42 64.3
Prupe.3G303600 Prunus persica HOM05D000135 ORTHO05D000816 1.1e-07 62.0 48 56.2
RcHm_v2.0_Chr2g0175201 Rosa chinensis HOM05D000135 ORTHO05D000816 1.1e-07 62.0 50 54.0
TAR622G0710 Trochodendron aralioides HOM05D000135 ORTHO05D000816 1.1e-07 62.0 48 58.3
GSVIVG01010385001 Vitis vinifera HOM05D000135 ORTHO05D000816 1.1e-07 62.0 44 59.1
DCAR_015089 Daucus carota HOM05D000135 ORTHO05D000816 1.4e-07 61.6 48 56.2
Psat3g176000 Pisum sativum HOM05D000135 ORTHO05D000816 1.4e-07 61.6 48 60.4
QL02p071822 Quercus lobata HOM05D000135 ORTHO05D000816 1.4e-07 61.6 50 54.0
Glyma.19G088200 Glycine max HOM05D000135 ORTHO05D000816 1.9e-07 61.2 50 54.0
Potri.005G259900 Populus trichocarpa HOM05D000135 ORTHO05D000816 1.9e-07 61.2 44 61.4
FvH4_5g08060 Fragaria vesca HOM05D000135 ORTHO05D000816 3.2e-07 60.5 47 59.6
FAN18G3513 Fragaria x ananassa HOM05D000135 ORTHO05D000816 3.2e-07 60.5 47 59.6
Glyma.16G059300 Glycine max HOM05D000135 ORTHO05D000816 3.2e-07 60.5 50 50.0
Nitab4.5_0002498g0080 Nicotiana tabacum HOM05D000135 ORTHO05D000816 3.2e-07 60.5 44 61.4
PGSC0003DMG400002994 Solanum tuberosum HOM05D000135 ORTHO05D000816 3.2e-07 60.5 44 61.4
GSVIVG01008516001 Vitis vinifera HOM05D000135 ORTHO05D000816 3.2e-07 60.5 48 54.2
CAN.G742.5 Capsicum annuum HOM05D000135 ORTHO05D000816 4.1e-07 60.1 46 58.7
Eucgr.B00125 Eucalyptus grandis HOM05D000135 ORTHO05D000816 4.1e-07 60.1 44 63.6
Hma1.2p1_1219F.1_g267970 Hydrangea macrophylla HOM05D000135 ORTHO05D000816 4.1e-07 60.1 50 54.0
Hma1.2p1_2105F.1_g314145 Hydrangea macrophylla HOM05D000135 ORTHO05D000816 4.1e-07 60.1 50 54.0
Lsat_1_v5_gn_9_1180 Lactuca sativa HOM05D000135 ORTHO05D000816 4.1e-07 60.1 50 50.0
Peaxi162Scf00259g00018 Petunia axillaris HOM05D000135 ORTHO05D000816 4.1e-07 60.1 42 64.3
Rhsim10G0008000 Rhododendron simsii HOM05D000135 ORTHO05D000816 4.1e-07 60.1 48 56.2
FAN02G0421 Fragaria x ananassa HOM05D000135 ORTHO05D000816 5.4e-07 59.7 50 52.0
Hma1.2p1_1219F.1_g267950 Hydrangea macrophylla HOM05D000135 ORTHO05D000816 5.4e-07 59.7 50 56.0
Psat1g085520 Pisum sativum HOM05D000135 ORTHO05D000816 5.4e-07 59.7 50 54.0
Prupe.5G152700 Prunus persica HOM05D000135 ORTHO05D000816 5.4e-07 59.7 50 54.0
Solyc11g071760.3 Solanum lycopersicum HOM05D000135 ORTHO05D000816 5.4e-07 59.7 44 59.1
Sopen11g029420 Solanum pennellii HOM05D000135 ORTHO05D000816 5.4e-07 59.7 44 59.1
Sopen11g029430 Solanum pennellii HOM05D000135 ORTHO05D000816 5.4e-07 59.7 44 59.1
HanXRQChr15g0474941 Helianthus annuus HOM05D000135 ORTHO05D000816 7.0e-07 59.3 50 52.0
Oeu011957.1 Olea europaea HOM05D000135 ORTHO05D000816 7.0e-07 59.3 52 51.9
Rhsim10G0007800 Rhododendron simsii HOM05D000135 ORTHO05D000816 7.0e-07 59.3 48 56.2
Dinv14818 Davidia involucrata HOM05D000135 ORTHO05D000816 9.2e-07 58.9 43 53.5
Eucgr.B00128 Eucalyptus grandis HOM05D000135 ORTHO05D000816 9.2e-07 58.9 44 61.4
FAN04G2593 Fragaria x ananassa HOM05D000135 ORTHO05D000816 9.2e-07 58.9 47 57.4
FAN13G0461 Fragaria x ananassa HOM05D000135 ORTHO05D000816 9.2e-07 58.9 47 57.4
Lsat_1_v5_gn_4_185301 Lactuca sativa HOM05D000135 ORTHO05D000816 9.2e-07 58.9 50 48.0
Medtr6g023460 Medicago truncatula HOM05D000135 ORTHO05D000816 9.2e-07 58.9 50 54.0
vmacro05944 Vaccinium macrocarpon HOM05D000135 ORTHO05D000816 9.2e-07 58.9 48 56.2
Eucgr.B00123 Eucalyptus grandis HOM05D000135 ORTHO05D000816 1.2e-06 58.5 44 63.6
Eucgr.B00124 Eucalyptus grandis HOM05D000135 ORTHO05D000816 1.2e-06 58.5 44 61.4
Sabra05G0201600 Salix brachista HOM05D000135 ORTHO05D000816 1.2e-06 58.5 44 56.8
Ca_28119_v3 Cicer arietinum L. HOM05D000135 ORTHO05D000816 1.6e-06 58.2 47 55.3
RcHm_v2.0_Chr7g0190421 Rosa chinensis HOM05D000135 ORTHO05D000816 1.6e-06 58.2 47 57.4
TAR622G0218 Trochodendron aralioides HOM05D000135 ORTHO05D000816 1.6e-06 58.2 48 56.2
Lj2C97T3 Lonicera japonica HOM05D000135 ORTHO05D000816 2.1e-06 57.8 41 65.9
QL02p016429 Quercus lobata HOM05D000135 ORTHO05D000816 2.1e-06 57.8 42 57.1
Thecc.03G127000 Theobroma cacao HOM05D000135 ORTHO05D000816 2.1e-06 57.8 48 56.2
VMungo0464G1988 Vigna mungo HOM05D000135 ORTHO05D000816 2.7e-06 57.4 50 54.0
GSVIVG01010382001 Vitis vinifera HOM05D000135 ORTHO05D000816 2.7e-06 57.4 42 57.1
CAN.G742.23 Capsicum annuum HOM05D000135 ORTHO05D000816 3.5e-06 57.0 44 56.8
CiPaw.07G129800 Carya illinoinensis HOM05D000135 ORTHO05D000816 3.5e-06 57.0 42 59.5
Duzib264G0451 Durio zibethinus HOM05D000135 ORTHO05D000816 3.5e-06 57.0 47 51.1
Duzib264G0910 Durio zibethinus HOM05D000135 ORTHO05D000816 3.5e-06 57.0 47 51.1
ECA232G4862 Erigeron canadensis HOM05D000135 ORTHO05D000816 3.5e-06 57.0 49 53.1
Eucgr.F03632 Eucalyptus grandis HOM05D000135 ORTHO05D000816 3.5e-06 57.0 42 59.5
HanXRQChr15g0486921 Helianthus annuus HOM05D000135 ORTHO05D000816 3.5e-06 57.0 50 46.0
Prupe.5G000600 Prunus persica HOM05D000135 ORTHO05D000816 3.5e-06 57.0 43 62.8
TPR.G38330 Trifolium pratense HOM05D000135 ORTHO05D000816 3.5e-06 57.0 48 56.2
vmacro05943 Vaccinium macrocarpon HOM05D000135 ORTHO05D000816 3.5e-06 57.0 47 53.2
MELO3C026214.2 Cucumis melo HOM05D000135 ORTHO05D000816 4.6e-06 56.6 43 60.5
CsaV3_1G000650 Cucumis sativus L. HOM05D000135 ORTHO05D000816 4.6e-06 56.6 43 60.5
FvH4_5g26790 Fragaria vesca HOM05D000135 ORTHO05D000816 4.6e-06 56.6 43 58.1
FAN04G2622 Fragaria x ananassa HOM05D000135 ORTHO05D000816 4.6e-06 56.6 43 58.1
FAN08G1719 Fragaria x ananassa HOM05D000135 ORTHO05D000816 4.6e-06 56.6 43 58.1
FAN13G2467 Fragaria x ananassa HOM05D000135 ORTHO05D000816 4.6e-06 56.6 43 58.1
FAN18G1887 Fragaria x ananassa HOM05D000135 ORTHO05D000816 4.6e-06 56.6 43 58.1
Glyma.05G047100 Glycine max HOM05D000135 ORTHO05D000816 4.6e-06 56.6 47 55.3
Sed0012230 Sechium edule HOM05D000135 ORTHO05D000816 4.6e-06 56.6 43 60.5
TAR629G1517 Trochodendron aralioides HOM05D000135 ORTHO05D000816 4.6e-06 56.6 48 54.2
Glyma.17G128900 Glycine max HOM05D000135 ORTHO05D000816 6.0e-06 56.2 48 54.2
Lalb_Chr14g0363211 Lupinus albus HOM05D000135 ORTHO05D000816 6.0e-06 56.2 45 53.3
PGR083G0560 Punica granatum HOM05D000135 ORTHO05D000816 6.0e-06 56.2 43 55.8
QL02p016339 Quercus lobata HOM05D000135 ORTHO05D000816 6.0e-06 56.2 42 57.1
Sed0013041 Sechium edule HOM05D000135 ORTHO05D000816 6.0e-06 56.2 47 51.1
GSVIVG01013467001 Vitis vinifera HOM05D000135 ORTHO05D000816 6.0e-06 56.2 43 58.1
Duzib205G1548 Durio zibethinus HOM05D000135 ORTHO05D000816 7.8e-06 55.8 48 54.2
FAN08G0825 Fragaria x ananassa HOM05D000135 ORTHO05D000816 7.8e-06 55.8 47 55.3


User provided reference genes

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