Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold47G17549 Striga asiatica HOM05D004676 ORTHO05D005661 3.0e-105 386.0 331 100.0
SGA_v2.0_scaffold154G37155 Striga asiatica HOM05D004676 ORTHO05D005661 1.5e-72 277.3 185 88.1
unitig_0.g1557 Utricularia gibba HOM05D004676 ORTHO05D005661 1.0e-65 254.6 198 77.3
Oeu019194.1 Olea europaea HOM05D004676 ORTHO05D005661 1.6e-61 240.7 187 74.3
unitig_747.g22032 Utricularia gibba HOM05D004676 ORTHO05D005661 1.6e-61 240.7 203 72.4
Migut.L00671 Erythranthe guttata HOM05D004676 ORTHO05D005661 2.7e-61 240.0 185 76.8
Oeu051436.2 Olea europaea HOM05D004676 ORTHO05D005661 4.5e-61 239.2 186 77.4
Migut.L00698 Erythranthe guttata HOM05D004676 ORTHO05D005661 1.1e-59 234.6 189 74.6
Dinv12426 Davidia involucrata HOM05D004676 ORTHO05D005661 4.2e-59 232.6 182 76.4
Migut.D02100 Erythranthe guttata HOM05D004676 ORTHO05D005661 7.2e-59 231.9 188 73.9
Sabra01G0116300 Salix brachista HOM05D004676 ORTHO05D005661 7.2e-59 231.9 204 64.7
Sabra01G0117800 Salix brachista HOM05D004676 ORTHO05D005661 9.5e-59 231.5 200 64.5
Lj1P153T22 Lonicera japonica HOM05D004676 ORTHO05D005661 1.2e-58 231.1 185 76.8
Nitab4.5_0005880g0060 Nicotiana tabacum HOM05D004676 ORTHO05D005661 8.0e-58 228.4 182 74.7
Thecc.09G321600 Theobroma cacao HOM05D004676 ORTHO05D005661 8.0e-58 228.4 184 76.1
Potri.001G148000 Populus trichocarpa HOM05D004676 ORTHO05D005661 1.8e-57 227.3 182 73.1
HanXRQChr01g0009481 Helianthus annuus HOM05D004676 ORTHO05D005661 2.3e-57 226.9 186 72.0
Hma1.2p1_0418F.1_g149200 Hydrangea macrophylla HOM05D004676 ORTHO05D005661 3.0e-57 226.5 200 70.5
Nitab4.5_0001424g0070 Nicotiana tabacum HOM05D004676 ORTHO05D005661 3.0e-57 226.5 182 74.2
CiPaw.13G094200 Carya illinoinensis HOM05D004676 ORTHO05D005661 6.8e-57 225.3 196 69.9
Nitab4.5_0003154g0010 Nicotiana tabacum HOM05D004676 ORTHO05D005661 1.2e-56 224.6 182 73.6
Rhsim01G0227600 Rhododendron simsii HOM05D004676 ORTHO05D005661 1.5e-56 224.2 182 75.3
PGSC0003DMG400018489 Solanum tuberosum HOM05D004676 ORTHO05D005661 3.4e-56 223.0 183 74.9
CAN.G137.34 Capsicum annuum HOM05D004676 ORTHO05D005661 5.7e-56 222.2 183 75.4
Sopen08g001490 Solanum pennellii HOM05D004676 ORTHO05D005661 7.5e-56 221.9 182 73.6
Solyc08g005450.3 Solanum lycopersicum HOM05D004676 ORTHO05D005661 2.2e-55 220.3 182 73.1
Cpa.g.sc161.42 Carica papaya HOM05D004676 ORTHO05D005661 2.8e-55 219.9 176 73.9
Sc21g0005490 Simmondsia chinensis HOM05D004676 ORTHO05D005661 2.8e-55 219.9 189 72.5
Eucgr.E01963 Eucalyptus grandis HOM05D004676 ORTHO05D005661 4.9e-55 219.2 194 71.6
Peaxi162Scf00045g00052 Petunia axillaris HOM05D004676 ORTHO05D005661 4.9e-55 219.2 194 69.6
Atru.chr3.3906 Acer truncatum HOM05D004676 ORTHO05D005661 8.3e-55 218.4 203 68.5
Cpa.g.sc81.149 Carica papaya HOM05D004676 ORTHO05D005661 8.3e-55 218.4 203 68.0
vmacro05212 Vaccinium macrocarpon HOM05D004676 ORTHO05D005661 3.1e-54 216.5 150 74.0
Cfa011505 Carpinus fangiana HOM05D004676 ORTHO05D005661 4.1e-54 216.1 200 66.5
Thecc.09G321800 Theobroma cacao HOM05D004676 ORTHO05D005661 4.1e-54 216.1 202 67.3
Haze_24097 Corylus avellana HOM05D004676 ORTHO05D005661 1.2e-53 214.5 200 68.0
Duzib168G2248 Durio zibethinus HOM05D004676 ORTHO05D005661 1.2e-53 214.5 180 72.8
Gohir.A07G098600 Gossypium hirsutum HOM05D004676 ORTHO05D005661 1.6e-53 214.2 182 71.4
Gorai.001G110800 Gossypium raimondii HOM05D004676 ORTHO05D005661 1.6e-53 214.2 182 71.4
Gohir.D07G102900 Gossypium hirsutum HOM05D004676 ORTHO05D005661 2.7e-53 213.4 203 67.0
Prupe.6G077300 Prunus persica HOM05D004676 ORTHO05D005661 4.5e-53 212.6 201 67.2
Actinidia34405 Actinidia chinensis HOM05D004676 ORTHO05D005661 5.9e-53 212.2 174 68.4
DCAR_025381 Daucus carota HOM05D004676 ORTHO05D005661 5.9e-53 212.2 183 72.1
Cc01_g12890 Coffea canephora HOM05D004676 ORTHO05D005661 1.0e-52 211.5 198 66.7
TAR633G1457 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.3e-52 211.1 195 68.7
Manes.01G173800 Manihot esculenta HOM05D004676 ORTHO05D005661 1.7e-52 210.7 181 71.8
FAN25G1996 Fragaria x ananassa HOM05D004676 ORTHO05D005661 2.3e-52 210.3 188 69.1
THA.LOC104826325 Tarenaya hassleriana HOM05D004676 ORTHO05D005661 2.3e-52 210.3 194 66.5
Manes.02G133000 Manihot esculenta HOM05D004676 ORTHO05D005661 2.9e-52 209.9 183 63.9
AUR62000799 Chenopodium quinoa HOM05D004676 ORTHO05D005661 3.8e-52 209.5 181 70.7
AUR62005169 Chenopodium quinoa HOM05D004676 ORTHO05D005661 3.8e-52 209.5 181 70.7
Lsat_1_v5_gn_5_170600 Lactuca sativa HOM05D004676 ORTHO05D005661 3.8e-52 209.5 135 78.5
RcHm_v2.0_Chr5g0064541 Rosa chinensis HOM05D004676 ORTHO05D005661 5.0e-52 209.1 180 71.1
FAN16G2805 Fragaria x ananassa HOM05D004676 ORTHO05D005661 8.6e-52 208.4 180 70.0
Hund18907 Selenicereus undatus HOM05D004676 ORTHO05D005661 8.6e-52 208.4 200 66.0
Actinidia23939 Actinidia chinensis HOM05D004676 ORTHO05D005661 1.1e-51 208.0 193 63.7
Nn1g00565 Nelumbo nucifera HOM05D004676 ORTHO05D005661 1.5e-51 207.6 193 65.8
FAN11G0391 Fragaria x ananassa HOM05D004676 ORTHO05D005661 1.9e-51 207.2 203 65.0
QL09p008735 Quercus lobata HOM05D004676 ORTHO05D005661 1.9e-51 207.2 200 65.5
THA.LOC104800662 Tarenaya hassleriana HOM05D004676 ORTHO05D005661 2.5e-51 206.8 182 68.7
Ah.04g160390 Amaranthus hybridus HOM05D004676 ORTHO05D005661 3.3e-51 206.5 181 69.6
FAN21G2159 Fragaria x ananassa HOM05D004676 ORTHO05D005661 4.3e-51 206.1 181 69.1
Ciclev10028807m.g Citrus clementina HOM05D004676 ORTHO05D005661 9.5e-51 204.9 195 67.2
Haze_12047 Corylus avellana HOM05D004676 ORTHO05D005661 9.5e-51 204.9 201 66.7
FvH4_3g36111 Fragaria vesca HOM05D004676 ORTHO05D005661 9.5e-51 204.9 180 69.4
TWI75G1679 Tripterygium wilfordii HOM05D004676 ORTHO05D005661 9.5e-51 204.9 148 71.6
EL10Ac4g09397 Beta vulgaris HOM05D004676 ORTHO05D005661 3.6e-50 203.0 186 69.4
CiPaw.14G068300 Carya illinoinensis HOM05D004676 ORTHO05D005661 3.6e-50 203.0 148 71.6
CsaV3_6G016860 Cucumis sativus L. HOM05D004676 ORTHO05D005661 3.6e-50 203.0 197 67.0
PGR119G2251 Punica granatum HOM05D004676 ORTHO05D005661 3.6e-50 203.0 184 70.7
Carub.0004s0990 Capsella rubella HOM05D004676 ORTHO05D005661 4.7e-50 202.6 180 69.4
MELO3C025917.2 Cucumis melo HOM05D004676 ORTHO05D005661 4.7e-50 202.6 182 69.2
AT2G28910 Arabidopsis thaliana HOM05D004676 ORTHO05D005661 6.1e-50 202.2 203 64.0
Aqoxy7G03598 Aquilegia oxysepala HOM05D004676 ORTHO05D005661 8.0e-50 201.8 146 73.3
TPR.G18864 Trifolium pratense HOM05D004676 ORTHO05D005661 8.0e-50 201.8 183 65.6
BcaC02g11024 Brassica carinata HOM05D004676 ORTHO05D005661 1.4e-49 201.1 180 67.2
C04p22070 Brassica napus HOM05D004676 ORTHO05D005661 1.4e-49 201.1 180 67.2
BolC4t23730H Brassica oleracea HOM05D004676 ORTHO05D005661 1.4e-49 201.1 180 67.2
SHI01165 Sapria himalayana HOM05D004676 ORTHO05D005661 1.4e-49 201.1 201 58.2
CARHR122080 Cardamine hirsuta HOM05D004676 ORTHO05D005661 1.8e-49 200.7 180 68.9
Ca_11220_v3 Cicer arietinum L. HOM05D004676 ORTHO05D005661 2.3e-49 200.3 183 65.0
CANSAT21G2535 Cannabis sativa HOM05D004676 ORTHO05D005661 4.0e-49 199.5 200 66.0
Eucgr.E01882 Eucalyptus grandis HOM05D004676 ORTHO05D005661 4.0e-49 199.5 151 71.5
Aa31LG5G7310 Aethionema arabicum HOM05D004676 ORTHO05D005661 5.2e-49 199.1 185 65.4
Sp4g11720 Schrenkiella parvula HOM05D004676 ORTHO05D005661 5.2e-49 199.1 180 67.8
Sed0011846 Sechium edule HOM05D004676 ORTHO05D005661 1.2e-48 198.0 182 67.6
A07p19390 Brassica napus HOM05D004676 ORTHO05D005661 1.5e-48 197.6 180 68.3
DCAR_024536 Daucus carota HOM05D004676 ORTHO05D005661 1.5e-48 197.6 141 72.3
ClCG02G020150 Citrullus lanatus HOM05D004676 ORTHO05D005661 2.0e-48 197.2 135 73.3
ECA248G3797 Erigeron canadensis HOM05D004676 ORTHO05D005661 3.4e-48 196.4 182 68.1
MD11G1108100 Malus domestica HOM05D004676 ORTHO05D005661 3.4e-48 196.4 180 68.9
AL4G23440 Arabidopsis lyrata HOM05D004676 ORTHO05D005661 4.4e-48 196.1 180 68.9
MD03G1093300 Malus domestica HOM05D004676 ORTHO05D005661 4.4e-48 196.1 181 68.5
Phvul.007G016200 Phaseolus vulgaris HOM05D004676 ORTHO05D005661 5.7e-48 195.7 187 63.6
Psat0s2898g0040 Pisum sativum HOM05D004676 ORTHO05D005661 7.5e-48 195.3 183 65.0
TWI79G0464 Tripterygium wilfordii HOM05D004676 ORTHO05D005661 1.3e-47 194.5 202 64.9
MBI14_g16284_MAGBIO Magnolia biondii HOM05D004676 ORTHO05D005661 2.9e-47 193.4 199 64.8
Ca_09918_v3 Cicer arietinum L. HOM05D004676 ORTHO05D005661 4.9e-47 192.6 201 61.7
PSO339G5531 Papaver somniferum HOM05D004676 ORTHO05D005661 1.1e-46 191.4 196 64.3
arahy.Tifrunner.gnm1.ann1.ID2MIU Arachis hypogaea HOM05D004676 ORTHO05D005661 1.4e-46 191.0 183 61.2
BcaB02g10212 Brassica carinata HOM05D004676 ORTHO05D005661 1.4e-46 191.0 181 67.4
Eucgr.J02052 Eucalyptus grandis HOM05D004676 ORTHO05D005661 1.8e-46 190.7 182 65.4
ECA233G5350 Erigeron canadensis HOM05D004676 ORTHO05D005661 2.4e-46 190.3 192 64.6
Glyma.20G104700 Glycine max HOM05D004676 ORTHO05D005661 3.2e-46 189.9 202 61.9
TAR100G0004 Trochodendron aralioides HOM05D004676 ORTHO05D005661 4.1e-46 189.5 207 59.4
VMungo0720G1898 Vigna mungo HOM05D004676 ORTHO05D005661 4.1e-46 189.5 194 62.4
RcHm_v2.0_Chr5g0064551 Rosa chinensis HOM05D004676 ORTHO05D005661 5.4e-46 189.1 180 64.4
PSO151G0082 Papaver somniferum HOM05D004676 ORTHO05D005661 9.2e-46 188.3 195 64.1
BolC4t27336H Brassica oleracea HOM05D004676 ORTHO05D005661 1.2e-45 188.0 180 65.6
Glyma.10G284600 Glycine max HOM05D004676 ORTHO05D005661 1.6e-45 187.6 201 58.7
CDE04G1893 Ceratophyllum demersum HOM05D004676 ORTHO05D005661 2.0e-45 187.2 181 65.2
Lalb_Chr06g0163861 Lupinus albus HOM05D004676 ORTHO05D005661 2.7e-45 186.8 198 55.6
CDE07G0255 Ceratophyllum demersum HOM05D004676 ORTHO05D005661 5.9e-45 185.7 201 63.2
SEGI_40255 Sequoiadendron giganteum HOM05D004676 ORTHO05D005661 7.8e-45 185.3 199 53.3
ATR0733G034 Amborella trichopoda HOM05D004676 ORTHO05D005661 1.0e-44 184.9 207 60.9
Lalb_Chr02g0143571 Lupinus albus HOM05D004676 ORTHO05D005661 5.0e-44 182.6 190 59.5
Lj5g0019317 Lotus japonicus HOM05D004676 ORTHO05D005661 8.6e-44 181.8 188 56.9
TAR588G0001 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.9e-43 180.6 147 65.3
TAR677G0002 Trochodendron aralioides HOM05D004676 ORTHO05D005661 2.5e-43 180.3 207 57.0
Mapoly0006s0051 Marchantia polymorpha HOM05D004676 ORTHO05D005661 3.3e-43 179.9 197 58.9
A04p05090 Brassica napus HOM05D004676 ORTHO05D005661 2.1e-42 177.2 180 63.3
A04p21940 Brassica napus HOM05D004676 ORTHO05D005661 2.1e-42 177.2 180 63.3
BraA04t17761Z Brassica rapa HOM05D004676 ORTHO05D005661 2.1e-42 177.2 180 63.3
BraA07t29644Z Brassica rapa HOM05D004676 ORTHO05D005661 8.0e-42 175.3 171 66.1
RcHm_v2.0_Chr5g0064841 Rosa chinensis HOM05D004676 ORTHO05D005661 1.8e-41 174.1 149 61.1
HPP92_003389 Vanilla planifolia HOM05D004676 ORTHO05D005661 2.3e-41 173.7 181 61.9
Pp3c8_12040 Physcomitrium patens HOM05D004676 ORTHO05D005661 6.8e-41 172.2 204 52.5
FAN11G1736 Fragaria x ananassa HOM05D002246 ORTHO05D002308 1.5e-40 171.0 180 60.6
FvH4_3g36120 Fragaria vesca HOM05D002246 ORTHO05D002308 4.4e-40 169.5 180 58.3
TAR383G0008 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.7e-39 167.5 112 75.0
TAR455G0002 Trochodendron aralioides HOM05D004676 ORTHO05D005661 1.7e-39 167.5 112 75.0
COL.COLO4_18509 Corchorus olitorius HOM05D004676 ORTHO05D005661 2.9e-39 166.8 101 81.2
Os09g0103700 Oryza sativa ssp. japonica HOM05D004676 ORTHO05D005661 2.9e-39 166.8 162 57.4
AagrBONN_evm.TU.Sc2ySwM_228.4612 Anthoceros agrestis HOM05D004676 ORTHO05D005661 8.3e-39 165.2 114 71.1
BcaC02g08125 Brassica carinata HOM05D004676 ORTHO05D005661 1.4e-38 164.5 121 67.8
Zm00001eb307410 Zea mays HOM05D004676 ORTHO05D005661 4.1e-38 162.9 130 64.6
Zm00001eb095710 Zea mays HOM05D004676 ORTHO05D005661 2.0e-37 160.6 145 60.7
Os05g0297400 Oryza sativa ssp. japonica HOM05D004676 ORTHO05D005661 1.8e-33 147.5 192 50.0
SMO117G0168 Selaginella moellendorffii HOM05D004676 ORTHO05D005661 2.3e-33 147.1 117 65.0
C04p58100 Brassica napus HOM05D004676 ORTHO05D005661 1.3e-31 141.4 99 72.7
ECA233G0785 Erigeron canadensis HOM05D004676 ORTHO05D005661 2.4e-30 137.1 192 51.6
ATR0693G379 Amborella trichopoda HOM05D004676 ORTHO05D005661 4.6e-29 132.9 208 52.9
ECA233G0017 Erigeron canadensis HOM05D004676 ORTHO05D005661 8.6e-28 128.6 200 49.0
BraA07t30700Z Brassica rapa HOM05D004676 ORTHO05D005661 1.1e-27 128.3 93 69.9
CBR_g53496 Chara braunii HOM05D004676 ORTHO05D137281 5.6e-27 125.9 101 60.4
Eucgr.E01961 Eucalyptus grandis HOM05D004676 ORTHO05D005661 8.9e-25 118.6 132 65.2
RcHm_v2.0_Chr5g0064811 Rosa chinensis HOM05D004676 ORTHO05D005661 1.6e-21 107.8 193 46.1
HPP92_003385 Vanilla planifolia HOM05D004676 ORTHO05D005661 1.5e-19 101.3 119 59.7
MD11G1107700 Malus domestica HOM05D004676 ORTHO05D005661 3.6e-18 96.7 74 67.6
TAR625G0807 Trochodendron aralioides HOM05D004676 ORTHO05D005661 8.1e-18 95.5 68 69.1
ECA233G4946 Erigeron canadensis HOM05D004676 ORTHO05D005661 1.4e-17 94.7 194 46.9
Dinv42954 Davidia involucrata HOM05D004736 ORTHO05D006424 5.2e-17 92.8 51 88.2
Dinv43146 Davidia involucrata HOM05D004736 ORTHO05D006424 5.2e-17 92.8 51 88.2
ECA247G4102 Erigeron canadensis HOM05D004676 ORTHO05D005661 6.9e-17 92.4 142 43.0
ECA233G2734 Erigeron canadensis HOM05D004676 ORTHO05D005661 3.5e-13 80.1 43 88.4
SEGI_06382 Sequoiadendron giganteum HOM05D004676 ORTHO05D005661 6.9e-09 65.9 40 75.0
Cre09.g389652 Chlamydomonas reinhardtii HOM05D004676 ORTHO05D005661 2.0e-08 64.3 120 35.8


User provided reference genes

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