Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 3.2e-92 341.7 165 100.0
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 1.1e-31 140.6 179 48.0
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 7.1e-31 137.9 197 41.6
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 1.6e-30 136.7 189 45.0
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 3.5e-30 135.6 197 41.6
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 1.7e-29 133.3 205 40.0
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 3.0e-29 132.5 181 49.2
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 1.1e-28 130.6 204 41.2
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 2.5e-28 129.4 198 43.4
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 3.3e-28 129.0 87 67.8
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 3.3e-28 129.0 190 42.1
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 4.3e-28 128.6 200 40.0
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 9.6e-28 127.5 96 61.5
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 1.3e-27 127.1 204 39.2
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 1.3e-27 127.1 204 39.2
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 2.1e-27 126.3 87 66.7
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 2.8e-27 125.9 190 42.1
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 3.6e-27 125.6 191 39.8
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 6.2e-27 124.8 97 62.9
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 6.2e-27 124.8 194 39.2
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 8.1e-27 124.4 189 39.2
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 8.1e-27 124.4 200 39.5
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 1.1e-26 124.0 180 39.4
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 1.1e-26 124.0 202 39.1
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.1e-26 124.0 199 41.2
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.4e-26 123.6 87 65.5
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 1.4e-26 123.6 90 66.7
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 1.8e-26 123.2 93 61.3
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 3.1e-26 122.5 192 39.6
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 3.1e-26 122.5 95 61.1
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 3.1e-26 122.5 87 64.4
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 5.3e-26 121.7 88 62.5
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 6.9e-26 121.3 87 65.5
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 9.0e-26 120.9 168 44.0
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 1.2e-25 120.6 171 43.9
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 1.2e-25 120.6 200 39.5
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 2.0e-25 119.8 191 38.2
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.6e-25 119.4 216 38.4
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 2.6e-25 119.4 218 37.2
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 2.6e-25 119.4 87 60.9
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 2.6e-25 119.4 90 61.1
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 3.4e-25 119.0 201 39.3
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.3e-24 117.1 177 44.6
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 2.9e-24 115.9 210 36.2
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.8e-24 115.5 84 65.5
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 3.8e-24 115.5 90 60.0
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 3.8e-24 115.5 212 37.3
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 3.8e-24 115.5 180 41.1
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 4.9e-24 115.2 211 37.9
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 6.4e-24 114.8 194 37.6
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 8.4e-24 114.4 84 65.5
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 8.4e-24 114.4 84 65.5
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 1.1e-23 114.0 170 42.4
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 1.4e-23 113.6 188 37.2
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.4e-23 113.6 90 62.2
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 2.4e-23 112.8 196 39.3
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 2.4e-23 112.8 92 58.7
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 2.4e-23 112.8 204 37.7
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 4.2e-23 112.1 90 58.9
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.2e-23 112.1 87 63.2
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.2e-23 112.1 87 63.2
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 4.2e-23 112.1 87 62.1
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 7.1e-23 111.3 171 40.9
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.2e-22 110.5 84 63.1
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 1.2e-22 110.5 92 57.6
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 1.2e-22 110.5 184 40.2
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 2.1e-22 109.8 88 59.1
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 2.1e-22 109.8 96 54.2
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.7e-22 109.4 87 64.4
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 2.7e-22 109.4 185 37.3
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 3.5e-22 109.0 163 42.3
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 4.6e-22 108.6 207 35.7
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.6e-22 108.6 87 62.1
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 6.0e-22 108.2 204 37.7
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 6.0e-22 108.2 178 41.0
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 7.9e-22 107.8 92 56.5
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 7.9e-22 107.8 92 56.5
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 1.3e-21 107.1 89 57.3
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 1.8e-21 106.7 212 34.4
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 1.8e-21 106.7 96 54.2
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 3.0e-21 105.9 213 36.6
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 3.0e-21 105.9 182 39.6
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 3.0e-21 105.9 184 39.1
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 5.1e-21 105.1 88 54.5
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 6.7e-21 104.8 88 55.7
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 8.7e-21 104.4 90 55.6
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 8.7e-21 104.4 90 55.6
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 1.1e-20 104.0 193 35.2
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.1e-20 104.0 90 57.8
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 1.1e-20 104.0 86 57.0
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 3.3e-20 102.4 184 40.2
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 7.4e-20 101.3 221 36.2
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 9.6e-20 100.9 91 56.0
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 9.6e-20 100.9 91 56.0
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 1.6e-19 100.1 111 46.8
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 2.1e-19 99.8 118 45.8
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 3.6e-19 99.0 111 46.8
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 4.8e-19 98.6 226 35.0
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 6.2e-19 98.2 97 50.5
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 8.1e-19 97.8 90 56.7
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 8.1e-19 97.8 90 56.7
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 1.4e-18 97.1 189 37.6
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 1.4e-18 97.1 90 52.2
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 1.8e-18 96.7 90 52.2
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 5.3e-18 95.1 164 40.2
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 9.0e-18 94.4 87 52.9
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 9.0e-18 94.4 152 40.1
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 1.2e-17 94.0 111 45.0
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 1.2e-17 94.0 111 45.0
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 2.6e-17 92.8 186 35.5
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 2.6e-17 92.8 175 37.1
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 4.5e-17 92.0 138 43.5
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 1.7e-16 90.1 87 50.6
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 6.4e-16 88.2 88 51.1
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 6.4e-16 88.2 90 51.1
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 8.4e-16 87.8 87 50.6
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 8.4e-16 87.8 87 50.6
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 1.1e-15 87.4 162 38.9
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 1.9e-15 86.7 90 51.1
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 3.2e-15 85.9 126 43.7
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 4.2e-15 85.5 132 45.5
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 7.1e-15 84.7 87 48.3
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 7.1e-15 84.7 194 36.6
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 9.3e-15 84.3 91 48.4
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 1.2e-14 84.0 132 40.9
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 1.2e-14 84.0 132 40.2
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 1.2e-14 84.0 132 40.9
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 1.2e-14 84.0 132 40.2
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 2.7e-14 82.8 94 46.8
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 3.5e-14 82.4 106 45.3
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 3.5e-14 82.4 84 46.4
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 3.5e-14 82.4 76 53.9
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 4.6e-14 82.0 92 45.7
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 7.9e-14 81.3 92 44.6
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 7.9e-14 81.3 196 34.2
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 7.9e-14 81.3 130 40.0
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 7.9e-14 81.3 130 40.0
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 1.0e-13 80.9 223 30.5
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 1.3e-13 80.5 87 48.3
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.8e-13 80.1 191 33.0
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 3.0e-13 79.3 186 33.3
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 3.9e-13 79.0 130 39.2
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 3.9e-13 79.0 130 39.2
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 3.9e-13 79.0 161 34.2
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 3.9e-13 79.0 95 41.1
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 5.1e-13 78.6 186 32.8
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 6.7e-13 78.2 84 46.4
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.5e-12 77.0 87 43.7
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.5e-12 77.0 87 43.7
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 1.9e-12 76.6 130 38.5
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 1.9e-12 76.6 130 38.5
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 2.5e-12 76.3 130 40.0
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 8.1e-11 71.2 141 34.0
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 1.4e-10 70.5 193 31.1
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 1.8e-10 70.1 66 50.0
ECA232G1846 Erigeron canadensis HOM05D004407 ORTHO05D005074 2.4e-10 69.7 180 33.3
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 4.0e-10 68.9 107 44.9
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 4.5e-09 65.5 106 41.5
AL4G40040 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 1.9e-07 60.1 107 41.1
Lsat_1_v5_gn_4_184741 Lactuca sativa HOM05D004407 ORTHO05D005074 5.5e-07 58.5 88 44.3
AT5G24640 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 3.5e-06 55.8 123 38.2
Medtr4g061650 Medicago truncatula HOM05D004407 ORTHO05D005074 4.6e-06 55.5 53 52.8


User provided reference genes

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