Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold47G17517 Striga asiatica HOM05D005478 ORTHO05D006426 4.0e-94 348.2 190 100.0
MSTRG.3284 Avicennia marina HOM05D005478 ORTHO05D006426 3.0e-57 225.7 183 66.7
Migut.K01412 Erythranthe guttata HOM05D005478 ORTHO05D006426 4.4e-53 211.8 183 61.2
MSTRG.15534 Avicennia marina HOM05D005478 ORTHO05D006426 3.8e-52 208.8 183 62.8
SGA_v2.0_scaffold30G12408 Striga asiatica HOM05D005478 ORTHO05D006426 1.9e-51 206.5 186 61.8
Oeu033728.1 Olea europaea HOM05D005478 ORTHO05D006426 1.8e-41 173.3 182 53.3
unitig_88.g27693 Utricularia gibba HOM05D000631 ORTHO05D000524 1.6e-39 166.8 183 49.2
GSVIVG01032384001 Vitis vinifera HOM05D005478 ORTHO05D006426 1.0e-36 157.5 183 51.4
CiPaw.03G045600 Carya illinoinensis HOM05D005478 ORTHO05D006426 2.2e-36 156.4 182 50.0
Hma1.2p1_0818F.1_g223270 Hydrangea macrophylla HOM05D005478 ORTHO05D006426 2.9e-36 156.0 177 53.1
Actinidia36124 Actinidia chinensis HOM05D005478 ORTHO05D006426 3.8e-36 155.6 185 48.6
QL02p074001 Quercus lobata HOM05D005478 ORTHO05D006426 3.8e-36 155.6 181 51.4
Lsat_1_v5_gn_0_18280 Lactuca sativa HOM05D005478 ORTHO05D006426 4.2e-35 152.1 183 49.2
PGSC0003DMG400012636 Solanum tuberosum HOM05D005478 ORTHO05D006426 5.5e-35 151.8 181 48.1
DCAR_011260 Daucus carota HOM05D005478 ORTHO05D006426 6.0e-34 148.3 181 47.5
Prupe.3G293900 Prunus persica HOM05D005478 ORTHO05D006426 1.8e-33 146.7 192 45.8
Sopen02g038220 Solanum pennellii HOM05D005478 ORTHO05D006426 2.3e-33 146.4 181 46.4
TWI56G0849 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 3.0e-33 146.0 176 47.7
Cpa.g.sc108.77 Carica papaya HOM05D005478 ORTHO05D006426 5.1e-33 145.2 185 45.9
Actinidia18441 Actinidia chinensis HOM05D005478 ORTHO05D006426 6.7e-33 144.8 178 47.2
ClCG10G013780 Citrullus lanatus HOM05D005478 ORTHO05D006426 6.7e-33 144.8 177 49.7
Solyc02g093450.3 Solanum lycopersicum HOM05D005478 ORTHO05D006426 1.1e-32 144.1 180 44.4
CsaV3_3G042880 Cucumis sativus L. HOM05D005478 ORTHO05D006426 5.7e-32 141.7 177 47.5
Oeu048609.1 Olea europaea HOM05D005478 ORTHO05D006426 7.4e-32 141.4 183 46.4
AUR62041940 Chenopodium quinoa HOM05D005478 ORTHO05D006426 1.6e-31 140.2 188 43.6
Hund15527 Selenicereus undatus HOM05D005478 ORTHO05D006426 3.7e-31 139.0 179 44.1
AUR62028419 Chenopodium quinoa HOM05D005478 ORTHO05D006426 6.3e-31 138.3 189 45.0
TWI36G1604 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 6.3e-31 138.3 176 45.5
CiPaw.04G029700 Carya illinoinensis HOM05D005478 ORTHO05D006426 1.1e-30 137.5 188 44.7
Medtr6g004420 Medicago truncatula HOM05D005478 ORTHO05D006426 5.3e-30 135.2 176 47.2
COL.COLO4_30424 Corchorus olitorius HOM05D005478 ORTHO05D006426 1.2e-29 134.0 190 42.1
TWI12G0237 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 1.5e-29 133.7 183 44.8
Sp2g16690 Schrenkiella parvula HOM05D005478 ORTHO05D006426 2.0e-29 133.3 179 44.1
TAR371G0105 Trochodendron aralioides HOM05D005478 ORTHO05D006426 3.4e-29 132.5 183 43.7
MELO3C026588.2 Cucumis melo HOM05D005478 ORTHO05D006426 4.5e-29 132.1 177 44.6
Cfa007338 Carpinus fangiana HOM05D005478 ORTHO05D006426 1.7e-28 130.2 189 43.9
Ciclev10016916m.g Citrus clementina HOM05D005478 ORTHO05D006426 1.7e-28 130.2 181 43.1
ECA238G3024 Erigeron canadensis HOM05D005478 ORTHO05D006426 1.7e-28 130.2 178 42.7
Sabra16G0222600 Salix brachista HOM05D005478 ORTHO05D006426 2.2e-28 129.8 181 42.0
Actinidia05981 Actinidia chinensis HOM05D005478 ORTHO05D006426 2.9e-28 129.4 176 45.5
Haze_14759 Corylus avellana HOM05D005478 ORTHO05D006426 8.4e-28 127.9 191 43.5
Manes.17G111100 Manihot esculenta HOM05D005478 ORTHO05D006426 8.4e-28 127.9 183 50.3
Sed0022021 Sechium edule HOM05D005478 ORTHO05D006426 1.9e-27 126.7 178 44.4
Peaxi162Scf00700g00430 Petunia axillaris HOM05D005478 ORTHO05D006426 3.2e-27 125.9 169 44.4
Potri.001G343200 Populus trichocarpa HOM05D005478 ORTHO05D006426 3.2e-27 125.9 181 42.0
Thhalv10004961m.g Eutrema salsugineum HOM05D005478 ORTHO05D006426 4.2e-27 125.6 181 40.9
Thecc.06G091700 Theobroma cacao HOM05D005478 ORTHO05D006426 4.2e-27 125.6 181 49.2
TAR629G3442 Trochodendron aralioides HOM05D005478 ORTHO05D006426 5.5e-27 125.2 186 41.9
AL5G16940 Arabidopsis lyrata HOM05D005478 ORTHO05D006426 7.2e-27 124.8 192 41.7
Duzib235G1061 Durio zibethinus HOM05D005478 ORTHO05D006426 7.2e-27 124.8 184 42.9
HanXRQChr07g0199031 Helianthus annuus HOM05D005478 ORTHO05D006426 7.2e-27 124.8 185 41.6
MD09G1022900 Malus domestica HOM05D005478 ORTHO05D006426 9.3e-27 124.4 196 41.8
BcaB04g19441 Brassica carinata HOM05D005478 ORTHO05D006426 1.2e-26 124.0 183 42.1
Duzib160G0719 Durio zibethinus HOM05D005478 ORTHO05D006426 2.1e-26 123.2 180 42.8
PGR142G0633 Punica granatum HOM05D005478 ORTHO05D006426 2.1e-26 123.2 186 39.8
Carub.0005s0595 Capsella rubella HOM05D005478 ORTHO05D006426 2.7e-26 122.9 184 38.6
Glyma.05G002400 Glycine max HOM05D005478 ORTHO05D006426 2.7e-26 122.9 176 45.5
Atru.chr6.2431 Acer truncatum HOM05D005478 ORTHO05D006426 3.5e-26 122.5 176 42.6
Aa31LG2G5140 Aethionema arabicum HOM05D005478 ORTHO05D006426 3.5e-26 122.5 192 40.1
THA.LOC104825319 Tarenaya hassleriana HOM05D005478 ORTHO05D006426 1.0e-25 120.9 181 39.2
TPR.G31952 Trifolium pratense HOM05D005478 ORTHO05D006426 1.0e-25 120.9 181 44.2
CARHR148890 Cardamine hirsuta HOM05D005478 ORTHO05D006426 1.3e-25 120.6 185 41.1
FvH4_6g51790 Fragaria vesca HOM05D005478 ORTHO05D006426 1.3e-25 120.6 188 44.1
FAN14G4849 Fragaria x ananassa HOM05D005478 ORTHO05D006426 1.3e-25 120.6 188 44.1
VMungo0464G1533 Vigna mungo HOM05D005478 ORTHO05D006426 1.3e-25 120.6 182 44.5
BraA09t35982Z Brassica rapa HOM05D005478 ORTHO05D006426 1.8e-25 120.2 180 41.7
FAN09G1593 Fragaria x ananassa HOM05D005478 ORTHO05D006426 1.8e-25 120.2 188 44.1
A09p03440 Brassica napus HOM05D005478 ORTHO05D006426 2.3e-25 119.8 180 42.2
FAN02G1690 Fragaria x ananassa HOM05D005478 ORTHO05D006426 2.3e-25 119.8 188 44.1
FAN05G2721 Fragaria x ananassa HOM05D005478 ORTHO05D006426 2.3e-25 119.8 188 44.1
Lsat_1_v5_gn_2_91160 Lactuca sativa HOM05D005478 ORTHO05D006426 2.3e-25 119.8 178 42.1
Ca_04142_v3 Cicer arietinum L. HOM05D005478 ORTHO05D006426 3.0e-25 119.4 176 42.0
Sc07g0003180 Simmondsia chinensis HOM05D005478 ORTHO05D006426 5.1e-25 118.6 176 43.8
A06p41110 Brassica napus HOM05D005478 ORTHO05D006426 6.7e-25 118.2 176 38.1
BraA06t27034Z Brassica rapa HOM05D005478 ORTHO05D006426 6.7e-25 118.2 176 38.1
MD17G1022200 Malus domestica HOM05D005478 ORTHO05D006426 1.1e-24 117.5 195 41.0
Lalb_Chr22g0360721 Lupinus albus HOM05D005478 ORTHO05D006426 1.5e-24 117.1 177 43.5
AT3G27520 Arabidopsis thaliana HOM05D005478 ORTHO05D006426 2.5e-24 116.3 192 38.0
Rhsim10G0014600 Rhododendron simsii HOM05D005478 ORTHO05D006426 2.5e-24 116.3 184 39.1
BolC7t44179H Brassica oleracea HOM05D005478 ORTHO05D006426 4.3e-24 115.5 176 37.5
CANSAT64G0255 Cannabis sativa HOM05D005478 ORTHO05D006426 4.3e-24 115.5 178 41.6
HanXRQChr14g0451171 Helianthus annuus HOM05D005478 ORTHO05D006426 4.3e-24 115.5 178 40.4
BcaC06g33809 Brassica carinata HOM05D005478 ORTHO05D006426 5.7e-24 115.2 176 37.5
C07p36630 Brassica napus HOM05D005478 ORTHO05D006426 9.7e-24 114.4 176 36.4
BcaC04g23900 Brassica carinata HOM05D005478 ORTHO05D006426 1.3e-23 114.0 180 40.0
C09p03650 Brassica napus HOM05D005478 ORTHO05D006426 1.3e-23 114.0 180 40.0
BcaC06g30982 Brassica carinata HOM05D005478 ORTHO05D006426 1.6e-23 113.6 183 39.9
BolC9t53284H Brassica oleracea HOM05D005478 ORTHO05D006426 6.3e-23 111.7 180 40.0
ATR0824G160 Amborella trichopoda HOM05D005478 ORTHO05D006426 8.2e-23 111.3 176 38.1
Duzib192G0894 Durio zibethinus HOM05D005478 ORTHO05D006426 1.1e-22 110.9 176 39.2
Thhalv10027961m.g Eutrema salsugineum HOM05D005478 ORTHO05D006426 3.1e-22 109.4 184 37.0
Glyma.19G002600 Glycine max HOM05D005478 ORTHO05D006426 9.0e-22 107.8 176 42.0
CSS0007505 Camellia sinensis var. sinensis HOM05D005478 ORTHO05D006426 2.0e-21 106.7 178 44.9
RcHm_v2.0_Chr2g0173291 Rosa chinensis HOM05D005478 ORTHO05D006426 2.0e-21 106.7 183 39.3
Psat1g053440 Pisum sativum HOM05D005478 ORTHO05D006426 2.6e-21 106.3 189 41.8
vmacro05877 Vaccinium macrocarpon HOM05D005478 ORTHO05D006426 2.6e-21 106.3 216 36.1
Eucgr.I01730 Eucalyptus grandis HOM05D005478 ORTHO05D006426 5.9e-21 105.1 181 39.2
Lj2g0025845 Lotus japonicus HOM05D005478 ORTHO05D006426 8.5e-20 101.3 177 40.1
arahy.Tifrunner.gnm1.ann1.47572L Arachis hypogaea HOM05D005478 ORTHO05D006426 3.2e-19 99.4 179 38.5
Nn3g16686 Nelumbo nucifera HOM05D005478 ORTHO05D006426 4.2e-19 99.0 178 37.1
Gohir.A09G082300 Gossypium hirsutum HOM05D005478 ORTHO05D006426 5.5e-19 98.6 184 35.3
PSO017G4510 Papaver somniferum HOM05D005478 ORTHO05D006426 7.2e-19 98.2 181 36.5
HPP92_006182 Vanilla planifolia HOM05D005478 ORTHO05D006426 7.2e-19 98.2 177 37.3
Gohir.D09G082100 Gossypium hirsutum HOM05D005478 ORTHO05D006426 7.9e-18 94.7 181 35.9
Gorai.006G097900 Gossypium raimondii HOM05D005478 ORTHO05D006426 7.9e-18 94.7 181 35.9
PSO478G1356 Papaver somniferum HOM05D005478 ORTHO05D006426 7.9e-18 94.7 182 36.3
Phvul.004G004600 Phaseolus vulgaris HOM05D005478 ORTHO05D006426 7.9e-18 94.7 179 37.4
Aqoxy5G03740 Aquilegia oxysepala HOM05D005478 ORTHO05D006426 1.4e-17 94.0 189 35.4
CDE09G0806 Ceratophyllum demersum HOM05D005478 ORTHO05D006426 1.4e-17 94.0 180 33.9
Ah.02g128220 Amaranthus hybridus HOM05D005478 ORTHO05D006426 1.8e-17 93.6 177 36.2
vmacro18294 Vaccinium macrocarpon HOM05D005478 ORTHO05D006426 3.0e-17 92.8 213 31.9
Lalb_Chr24g0403571 Lupinus albus HOM05D005478 ORTHO05D006426 3.9e-17 92.4 180 37.8
SEGI_00200 Sequoiadendron giganteum HOM05D005478 ORTHO05D006426 3.9e-17 92.4 183 33.9
THA.LOC104825211 Tarenaya hassleriana HOM05D005478 ORTHO05D006426 6.7e-17 91.7 153 39.2
PSO063G0871 Papaver somniferum HOM05D005478 ORTHO05D006426 1.5e-16 90.5 179 32.4
Aqoxy1G02464 Aquilegia oxysepala HOM05D005478 ORTHO05D006426 2.0e-16 90.1 176 36.4
arahy.Tifrunner.gnm1.ann1.WAXE9D Arachis hypogaea HOM05D005478 ORTHO05D006426 7.4e-16 88.2 205 35.6
PSO754G0087 Papaver somniferum HOM05D005478 ORTHO05D006426 8.2e-15 84.7 179 32.4
MBI14_g36718_MAGBIO Magnolia biondii HOM05D005478 ORTHO05D006426 3.1e-14 82.8 176 36.4
CDE02G4674 Ceratophyllum demersum HOM05D005478 ORTHO05D006426 9.1e-14 81.3 174 31.6
Dinv25725 Davidia involucrata HOM05D005478 ORTHO05D006426 2.9e-12 76.3 133 40.6
Lju41C43G9 Lonicera japonica HOM05D005478 ORTHO05D006426 6.5e-12 75.1 134 38.1
Cc07_g01510 Coffea canephora HOM05D005478 ORTHO05D006426 1.4e-11 73.9 60 56.7
Os02g0595300 Oryza sativa ssp. japonica HOM05D005478 ORTHO05D006426 3.6e-10 69.3 183 33.9
Nitab4.5_0005593g0050 Nicotiana tabacum HOM05D005478 ORTHO05D006426 4.7e-10 68.9 158 34.2
Dinv33426 Davidia involucrata HOM05D005478 ORTHO05D006426 2.3e-09 66.6 54 66.7
Oeu018990.1 Olea europaea HOM05D005478 ORTHO05D006426 2.3e-09 66.6 87 43.7
EL10Ac6g14100 Beta vulgaris HOM05D005478 ORTHO05D006426 3.0e-09 66.2 134 35.1
Zm00001eb183740 Zea mays HOM05D044595 ORTHO05D006426 3.0e-09 66.2 177 28.2
Nitab4.5_0000326g0190 Nicotiana tabacum HOM05D006502 ORTHO05D007704 4.4e-08 62.4 52 53.8
Nn3g16214 Nelumbo nucifera HOM05D005478 ORTHO05D006426 1.7e-07 60.5 47 57.4
Gohir.D05G130900 Gossypium hirsutum HOM05D005478 ORTHO05D006426 1.1e-06 57.8 105 33.3
DCAR_022257 Daucus carota HOM05D001346 ORTHO05D006426 4.1e-06 55.8 50 50.0


User provided reference genes

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