Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold47G17494 Striga asiatica HOM05D005344 ORTHO05D006444 1.6e-67 259.2 129 100.0
Nitab4.5_0001988g0010 Nicotiana tabacum HOM05D005344 ORTHO05D006444 9.4e-63 243.4 129 92.2
Migut.N03145 Erythranthe guttata HOM05D005344 ORTHO05D006444 1.2e-62 243.0 129 92.2
Solyc04g081220.3 Solanum lycopersicum HOM05D005344 ORTHO05D006444 1.6e-62 242.7 129 90.7
Sopen04g034830 Solanum pennellii HOM05D005344 ORTHO05D006444 1.6e-62 242.7 129 90.7
PGSC0003DMG400003723 Solanum tuberosum HOM05D005344 ORTHO05D006444 2.7e-62 241.9 129 90.7
Nitab4.5_0006992g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 4.6e-62 241.1 129 91.5
MSTRG.24255 Avicennia marina HOM05D005344 ORTHO05D006444 6.7e-61 237.3 129 91.5
Peaxi162Scf00287g01714 Petunia axillaris HOM05D005344 ORTHO05D006444 8.8e-61 236.9 129 88.4
Cc10_g01930 Coffea canephora HOM05D005344 ORTHO05D006444 1.1e-58 229.9 129 86.8
Gohir.A05G214800 Gossypium hirsutum HOM05D005344 ORTHO05D006444 9.1e-58 226.9 129 86.0
Gohir.D05G218100 Gossypium hirsutum HOM05D005344 ORTHO05D006444 1.2e-57 226.5 129 86.0
Nitab4.5_0005425g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 1.5e-57 226.1 119 90.8
SalBow8G2912 Salvia bowleyana HOM05D005344 ORTHO05D006444 4.5e-57 224.6 119 90.8
CAN.G1271.12 Capsicum annuum HOM05D005344 ORTHO05D006444 5.9e-57 224.2 119 89.1
CsaV3_3G045650 Cucumis sativus L. HOM05D005344 ORTHO05D006444 7.7e-57 223.8 127 85.8
Duzib093G0333 Durio zibethinus HOM05D005344 ORTHO05D006444 1.0e-56 223.4 129 84.5
Oeu031192.1 Olea europaea HOM05D005344 ORTHO05D006444 3.8e-56 221.5 119 88.2
Potri.004G228566 Populus trichocarpa HOM05D005344 ORTHO05D006444 5.0e-56 221.1 129 85.3
Cpa.g.sc116.53 Carica papaya HOM05D005344 ORTHO05D006444 6.5e-56 220.7 127 84.3
Thecc.08G040900 Theobroma cacao HOM05D005344 ORTHO05D006444 6.5e-56 220.7 129 83.7
TWI75G1031 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 6.5e-56 220.7 129 83.7
FAN15G2308 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.1e-55 219.9 129 82.9
PGR083G0019 Punica granatum HOM05D005344 ORTHO05D006444 1.4e-55 219.5 129 83.7
TWI31G0971 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 1.9e-55 219.2 129 83.7
Oeu024518.1 Olea europaea HOM05D005344 ORTHO05D006444 2.5e-55 218.8 119 87.4
PGR102G3231 Punica granatum HOM05D005344 ORTHO05D006444 2.5e-55 218.8 127 84.3
arahy.Tifrunner.gnm1.ann1.Y8FRL8 Arachis hypogaea HOM05D005344 ORTHO05D006444 4.2e-55 218.0 129 80.6
CANSAT56G2754 Cannabis sativa HOM05D005344 ORTHO05D006444 4.2e-55 218.0 129 82.2
HanXRQChr15g0480961 Helianthus annuus HOM05D005344 ORTHO05D006444 1.2e-54 216.5 129 82.9
QL02p011006 Quercus lobata HOM05D005344 ORTHO05D006444 1.2e-54 216.5 128 82.0
Sed0018322 Sechium edule HOM05D005344 ORTHO05D006444 2.7e-54 215.3 127 82.7
TAR381G0484 Trochodendron aralioides HOM05D005344 ORTHO05D006444 4.7e-54 214.5 129 80.6
Prupe.1G182400 Prunus persica HOM05D005344 ORTHO05D006444 7.9e-54 213.8 129 82.2
CANSAT56G2098 Cannabis sativa HOM05D005344 ORTHO05D006444 1.0e-53 213.4 129 81.4
FvH4_2g38800 Fragaria vesca HOM05D005344 ORTHO05D006444 1.0e-53 213.4 129 80.6
HanXRQChr04g0119171 Helianthus annuus HOM05D005344 ORTHO05D006444 1.0e-53 213.4 129 81.4
RcHm_v2.0_Chr6g0302491 Rosa chinensis HOM05D005344 ORTHO05D006444 1.0e-53 213.4 129 81.4
Gorai.009G225000 Gossypium raimondii HOM05D005344 ORTHO05D006444 1.4e-53 213.0 119 86.6
Atru.chr12.1135 Acer truncatum HOM05D005344 ORTHO05D006444 1.8e-53 212.6 127 80.3
Nn6g32300 Nelumbo nucifera HOM05D005344 ORTHO05D006444 1.8e-53 212.6 129 82.2
Manes.18G015800 Manihot esculenta HOM05D005344 ORTHO05D006444 2.3e-53 212.2 129 79.8
Prupe.1G368800 Prunus persica HOM05D005344 ORTHO05D006444 2.3e-53 212.2 129 80.6
CiPaw.08G064300 Carya illinoinensis HOM05D005344 ORTHO05D006444 3.0e-53 211.8 129 80.6
MD02G1241500 Malus domestica HOM05D005344 ORTHO05D006444 3.9e-53 211.5 129 79.8
QL03p018250 Quercus lobata HOM05D005344 ORTHO05D006444 5.2e-53 211.1 128 79.7
Sabra01G0173600 Salix brachista HOM05D005344 ORTHO05D006444 5.2e-53 211.1 120 85.8
GSVIVG01009861001 Vitis vinifera HOM05D005344 ORTHO05D006444 5.2e-53 211.1 129 80.6
MD07G1075400 Malus domestica HOM05D005344 ORTHO05D006444 6.7e-53 210.7 129 79.8
Cfa013923 Carpinus fangiana HOM05D005344 ORTHO05D006444 8.8e-53 210.3 128 80.5
ECA236G2959 Erigeron canadensis HOM05D005344 ORTHO05D006444 8.8e-53 210.3 129 79.1
Lsat_1_v5_gn_7_29421 Lactuca sativa HOM05D005344 ORTHO05D006444 8.8e-53 210.3 129 80.6
unitig_899.g15276 Utricularia gibba HOM05D005344 ORTHO05D006444 8.8e-53 210.3 119 86.6
CSS0034614 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 1.1e-52 209.9 129 79.8
Dinv39499 Davidia involucrata HOM05D005344 ORTHO05D006444 1.1e-52 209.9 129 79.8
Eucgr.F01631 Eucalyptus grandis HOM05D005344 ORTHO05D006444 1.5e-52 209.5 124 81.5
Lalb_Chr11g0061991 Lupinus albus HOM05D005344 ORTHO05D006444 1.5e-52 209.5 129 79.8
BcaB06g27347 Brassica carinata HOM05D005344 ORTHO05D006444 2.0e-52 209.1 129 78.3
BolC4t26183H Brassica oleracea HOM05D005344 ORTHO05D006444 2.0e-52 209.1 129 78.3
BraA04t16898Z Brassica rapa HOM05D005344 ORTHO05D006444 2.0e-52 209.1 129 78.3
ClCG05G018520 Citrullus lanatus HOM05D005344 ORTHO05D006444 2.0e-52 209.1 119 85.7
Potri.012G106900 Populus trichocarpa HOM05D005344 ORTHO05D006444 2.6e-52 208.8 119 86.6
Sp7g02390 Schrenkiella parvula HOM05D005344 ORTHO05D006444 2.6e-52 208.8 127 78.7
Aa31LG9G16480 Aethionema arabicum HOM05D005344 ORTHO05D006444 4.4e-52 208.0 127 78.0
COL.COLO4_32025 Corchorus olitorius HOM05D005344 ORTHO05D006444 5.7e-52 207.6 119 84.9
Carub.0007s3634 Capsella rubella HOM05D005344 ORTHO05D006444 7.4e-52 207.2 127 78.7
AT5G39600 Arabidopsis thaliana HOM05D005344 ORTHO05D006444 9.7e-52 206.8 127 78.7
Sc02g0008440 Simmondsia chinensis HOM05D005344 ORTHO05D006444 1.7e-51 206.1 129 78.3
FAN20G2570 Fragaria x ananassa HOM05D005344 ORTHO05D006444 2.2e-51 205.7 119 83.2
Psat5g014400 Pisum sativum HOM05D005344 ORTHO05D006444 2.2e-51 205.7 129 77.5
Thhalv10027992m.g Eutrema salsugineum HOM05D005344 ORTHO05D006444 2.8e-51 205.3 127 77.2
AL7G50710 Arabidopsis lyrata HOM05D005344 ORTHO05D006444 3.7e-51 204.9 127 77.2
CDE05G1229 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 3.7e-51 204.9 129 78.3
Ciclev10002838m.g Citrus clementina HOM05D005344 ORTHO05D006444 8.2e-51 203.8 127 77.2
arahy.Tifrunner.gnm1.ann1.0YI8WX Arachis hypogaea HOM05D005344 ORTHO05D006444 1.1e-50 203.4 119 80.7
Medtr3g113260 Medicago truncatula HOM05D005344 ORTHO05D006444 1.4e-50 203.0 129 76.7
TPR.G5807 Trifolium pratense HOM05D005344 ORTHO05D006444 2.4e-50 202.2 130 77.7
arahy.Tifrunner.gnm1.ann1.2J2T1L Arachis hypogaea HOM05D005344 ORTHO05D006444 3.1e-50 201.8 122 79.5
Actinidia15404 Actinidia chinensis HOM05D005344 ORTHO05D006444 5.3e-50 201.1 127 76.4
CARHR262690 Cardamine hirsuta HOM05D005344 ORTHO05D006444 7.0e-50 200.7 127 76.4
TPR.G38895 Trifolium pratense HOM05D005344 ORTHO05D006444 7.0e-50 200.7 129 76.0
vmacro04337 Vaccinium macrocarpon HOM05D005344 ORTHO05D006444 7.0e-50 200.7 119 81.5
Glyma.06G025600 Glycine max HOM05D005344 ORTHO05D006444 9.1e-50 200.3 129 77.5
Medtr1g013440 Medicago truncatula HOM05D005344 ORTHO05D006444 9.1e-50 200.3 129 76.0
Lj1g0020845 Lotus japonicus HOM05D005344 ORTHO05D006444 1.2e-49 199.9 129 76.0
Rhsim07G0245900 Rhododendron simsii HOM05D005344 ORTHO05D006444 1.2e-49 199.9 119 81.5
arahy.Tifrunner.gnm1.ann1.NGB00B Arachis hypogaea HOM05D005344 ORTHO05D006444 1.6e-49 199.5 119 79.8
PSO541G4852 Papaver somniferum HOM05D005344 ORTHO05D006444 1.6e-49 199.5 129 75.2
PSO675G5369 Papaver somniferum HOM05D005344 ORTHO05D006444 1.6e-49 199.5 129 75.2
MELO3C003771.2 Cucumis melo HOM05D005344 ORTHO05D006444 2.6e-49 198.7 119 81.5
TAR625G0974 Trochodendron aralioides HOM05D005344 ORTHO05D006444 2.6e-49 198.7 129 73.6
CSS0046670 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 3.5e-49 198.4 119 79.0
Haze_22604 Corylus avellana HOM05D005344 ORTHO05D006444 4.5e-49 198.0 119 82.4
DCAR_013854 Daucus carota HOM05D005344 ORTHO05D006444 7.7e-49 197.2 119 80.7
A04p12340 Brassica napus HOM05D005344 ORTHO05D006444 1.0e-48 196.8 119 79.0
C04p46010 Brassica napus HOM05D005344 ORTHO05D006444 1.0e-48 196.8 119 79.0
Phvul.009G015400 Phaseolus vulgaris HOM05D005344 ORTHO05D006444 1.0e-48 196.8 129 76.0
Glyma.04G025800 Glycine max HOM05D005344 ORTHO05D006444 1.3e-48 196.4 129 75.2
Aqoxy6G02944 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 1.7e-48 196.1 119 79.8
CSS0046173 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 1.7e-48 196.1 119 78.2
CDE05G1331 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 3.8e-48 194.9 119 79.0
EL10Ac1g02258 Beta vulgaris HOM05D005344 ORTHO05D006444 6.5e-48 194.1 128 71.9
FvH4_1g25620 Fragaria vesca HOM05D005344 ORTHO05D006444 3.2e-47 191.8 127 74.8
Ca_16814_v3 Cicer arietinum L. HOM05D005344 ORTHO05D006444 9.4e-47 190.3 119 77.3
AUR62035723 Chenopodium quinoa HOM05D005344 ORTHO05D006444 1.2e-46 189.9 146 65.8
HPP92_014936 Vanilla planifolia HOM05D005344 ORTHO05D006444 2.1e-46 189.1 128 75.0
Aqoxy6G02319 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 3.6e-46 188.3 129 72.1
AUR62035436 Chenopodium quinoa HOM05D005344 ORTHO05D006444 3.6e-46 188.3 119 74.8
VMungo1309G2030 Vigna mungo HOM05D005344 ORTHO05D006444 2.3e-45 185.7 126 74.6
FAN26G0652 Fragaria x ananassa HOM05D005344 ORTHO05D006444 2.0e-44 182.6 122 73.0
FAN23G0736 Fragaria x ananassa HOM05D005344 ORTHO05D006444 3.3e-44 181.8 130 71.5
SHI08085 Sapria himalayana HOM05D005344 ORTHO05D006444 9.7e-44 180.3 119 73.9
TAR625G1223 Trochodendron aralioides HOM05D005344 ORTHO05D006444 3.7e-43 178.3 117 71.8
FAN19G0275 Fragaria x ananassa HOM05D005344 ORTHO05D006444 6.3e-43 177.6 119 73.9
ATR0665G498 Amborella trichopoda HOM05D005344 ORTHO05D006444 1.8e-42 176.0 129 69.8
Manes.09G054100 Manihot esculenta HOM05D005344 ORTHO05D006444 9.1e-42 173.7 124 66.9
MSTRG.22330 Avicennia marina HOM05D005344 ORTHO05D006444 1.2e-41 173.3 97 84.5
arahy.Tifrunner.gnm1.ann1.3U1GZ3 Arachis hypogaea HOM05D005344 ORTHO05D006444 1.6e-41 172.9 107 76.6
arahy.Tifrunner.gnm1.ann1.IGJ8TG Arachis hypogaea HOM05D005344 ORTHO05D006444 5.9e-41 171.0 105 77.1
Atru.chr4.1572 Acer truncatum HOM05D005344 ORTHO05D006444 3.2e-39 165.2 113 72.6
MBI05_g26505_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 9.4e-39 163.7 107 75.7
arahy.Tifrunner.gnm1.ann1.Y1NSFR Arachis hypogaea HOM05D005344 ORTHO05D006444 3.0e-37 158.7 96 78.1
arahy.Tifrunner.gnm1.ann1.2QY3VR Arachis hypogaea HOM05D005344 ORTHO05D006444 8.8e-37 157.1 109 71.6
arahy.Tifrunner.gnm1.ann1.H9RICG Arachis hypogaea HOM05D005344 ORTHO05D006444 8.8e-37 157.1 95 77.9
arahy.Tifrunner.gnm1.ann1.ZTTZ43 Arachis hypogaea HOM05D005344 ORTHO05D006444 2.6e-36 155.6 96 77.1
Pp3c9_11020 Physcomitrium patens HOM05D005344 ORTHO05D006444 2.0e-33 146.0 129 57.4
Gorai.005G111500 Gossypium raimondii HOM05D005344 ORTHO05D006444 2.7e-33 145.6 100 72.0
Os02g0282100 Oryza sativa ssp. japonica HOM05D005344 ORTHO05D006444 2.7e-33 145.6 143 53.8
Mapoly0151s0020 Marchantia polymorpha HOM05D005344 ORTHO05D006444 8.6e-32 140.6 113 57.5
Zm00001eb237200 Zea mays HOM05D005344 ORTHO05D006444 2.1e-30 136.0 141 51.1
ATR0605G109 Amborella trichopoda HOM05D005344 ORTHO05D006444 1.2e-28 130.2 92 72.8
Hund00462 Selenicereus undatus HOM05D005344 ORTHO05D006444 9.8e-28 127.1 113 54.9
AagrBONN_evm.TU.Sc2ySwM_117.1156 Anthoceros agrestis HOM05D005344 ORTHO05D006444 1.4e-26 123.2 99 56.6
MBI07_g11722_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 7.0e-26 120.9 98 65.3
arahy.Tifrunner.gnm1.ann1.3DP3ZG Arachis hypogaea HOM05D005344 ORTHO05D006444 4.3e-15 85.1 51 80.4
CSS0040415 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 5.6e-07 58.2 39 61.5
CSS0035037 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 9.5e-07 57.4 39 66.7


User provided reference genes

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