Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold479G52276 Striga asiatica HOM05D002660 ORTHO05D003902 0.0e+00 1141.3 585 100.0
ATMG01410 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 7.3e-30 136.3 122 56.6
Glyma.08G300900 Glycine max HOM05D002660 ORTHO05D003902 1.1e-28 132.5 174 43.7
Lj5g0008059 Lotus japonicus HOM05D002660 ORTHO05D003902 2.4e-28 131.3 174 43.1
RcHm_v2.0_MTg0498601 Rosa chinensis HOM05D002660 ORTHO05D003902 1.3e-23 115.5 121 49.6
Lsat_1_v5_gn_5_13340 Lactuca sativa HOM05D002660 ORTHO05D003902 1.3e-18 99.0 117 44.4
Lsat_1_v5_gn_5_172580 Lactuca sativa HOM05D002660 ORTHO05D003902 1.3e-18 99.0 117 44.4
arahy.Tifrunner.gnm1.ann1.8U7R2G Arachis hypogaea HOM05D002660 ORTHO05D003902 1.7e-18 98.6 149 43.0
arahy.Tifrunner.gnm1.ann1.BS65NI Arachis hypogaea HOM05D002660 ORTHO05D003902 3.8e-18 97.4 121 47.9
arahy.Tifrunner.gnm1.ann1.ET7F5Q Arachis hypogaea HOM05D002660 ORTHO05D003902 3.8e-18 97.4 121 47.9
arahy.Tifrunner.gnm1.ann1.HMG3T6 Arachis hypogaea HOM05D002660 ORTHO05D003902 3.8e-18 97.4 110 50.9
arahy.Tifrunner.gnm1.ann1.P7KX5B Arachis hypogaea HOM05D002660 ORTHO05D003902 3.8e-18 97.4 121 47.9
arahy.Tifrunner.gnm1.ann1.QMNG84 Arachis hypogaea HOM05D002660 ORTHO05D003902 3.8e-18 97.4 121 47.9
Lalb_Chr00c24g0406851 Lupinus albus HOM05D002660 ORTHO05D003902 1.4e-17 95.5 140 41.4
VMungo0985G0011 Vigna mungo HOM05D008696 ORTHO05D002807 1.9e-17 95.1 146 41.1
CAN.G72.10 Capsicum annuum HOM05D002660 ORTHO05D003902 5.1e-15 87.0 126 38.1
CAN.G248.9 Capsicum annuum HOM05D002660 ORTHO05D003902 1.5e-14 85.5 222 30.6
COL.COLO4_02507 Corchorus olitorius HOM05D002660 ORTHO05D003902 4.3e-14 84.0 95 50.5
COL.COLO4_04088 Corchorus olitorius HOM05D002660 ORTHO05D003902 5.6e-14 83.6 138 42.0
CAN.G1167.16 Capsicum annuum HOM05D002660 ORTHO05D003902 9.6e-14 82.8 225 32.4
LjContig00315g0012920 Lotus japonicus HOM05D002660 ORTHO05D003902 9.6e-14 82.8 159 36.5
CAN.G85.19 Capsicum annuum HOM05D002660 ORTHO05D003902 2.1e-13 81.6 125 38.4
BcaC05g27131 Brassica carinata HOM05D002660 ORTHO05D003902 2.8e-13 81.3 55 70.9
CAN.G1109.11 Capsicum annuum HOM05D002660 ORTHO05D003902 2.8e-13 81.3 223 31.8
CAN.G85.22 Capsicum annuum HOM05D002660 ORTHO05D003902 2.8e-13 81.3 126 34.9
MBI14_g38258_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 2.8e-13 81.3 119 37.8
Solyc00g500181.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.8e-13 81.3 125 36.8
Solyc00g500227.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.8e-13 81.3 125 36.8
Solyc00g500263.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.8e-13 81.3 125 36.8
Solyc00g500350.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.8e-13 81.3 125 36.8
Sopen00g006790 Solanum pennellii HOM05D002660 ORTHO05D003902 2.8e-13 81.3 125 36.8
PGSC0003DMG400033607 Solanum tuberosum HOM05D002660 ORTHO05D003902 2.8e-13 81.3 125 36.8
SGA_v2.0_scaffold420G51340 Striga asiatica HOM05D002660 ORTHO05D003902 8.1e-13 79.7 122 41.0
SHI41394 Sapria himalayana HOM05D002660 ORTHO05D003902 1.1e-12 79.3 177 35.0
Solyc03g063470.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.1e-12 79.3 126 35.7
SGA_v2.0_scaffold245G44628 Striga asiatica HOM05D002660 ORTHO05D003902 1.1e-12 79.3 90 50.0
MBI14_g38259_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D010725 1.4e-12 79.0 94 43.6
Sed0020463 Sechium edule HOM05D002660 ORTHO05D003902 1.8e-12 78.6 135 35.6
PGSC0003DMG400001137 Solanum tuberosum HOM05D002660 ORTHO05D003902 2.4e-12 78.2 125 37.6
arahy.Tifrunner.gnm1.ann1.DD5JWP Arachis hypogaea HOM05D002660 ORTHO05D003902 3.1e-12 77.8 105 41.9
Sopen11g018230 Solanum pennellii HOM05D002660 ORTHO05D003902 3.1e-12 77.8 125 36.8
CARHR283370 Cardamine hirsuta HOM05D002660 ORTHO05D003902 5.3e-12 77.0 144 36.1
CsaV3_UNG207980 Cucumis sativus L. HOM05D002660 ORTHO05D003902 5.3e-12 77.0 91 47.3
AT2G07749 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 6.9e-12 76.6 144 36.1
ATMG01110 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 6.9e-12 76.6 144 36.1
BcaC05g26896 Brassica carinata HOM05D002660 ORTHO05D003902 6.9e-12 76.6 144 36.1
BcaC08g43707 Brassica carinata HOM05D002660 ORTHO05D003902 6.9e-12 76.6 144 36.1
BNapus_Darmor_BZH_scaffold_234p00270 Brassica napus HOM05D002660 ORTHO05D003902 6.9e-12 76.6 144 36.1
BolSC28t60340H Brassica oleracea HOM05D002660 ORTHO05D003902 6.9e-12 76.6 144 36.1
CAN.G1.6 Capsicum annuum HOM05D002660 ORTHO05D003902 9.0e-12 76.3 220 30.9
Glyma.12G175100 Glycine max HOM05D002660 ORTHO05D003902 9.0e-12 76.3 107 40.2
GSVIVG01029663001 Vitis vinifera HOM05D002660 ORTHO05D003902 9.0e-12 76.3 94 46.8
Solyc00g142170.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.2e-11 75.9 125 36.8
Solyc00g500255.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.2e-11 75.9 125 36.8
SGA_v2.0_scaffold400G50852 Striga asiatica HOM05D000388 ORTHO05D000473 1.2e-11 75.9 128 35.9
MBI14_g44092_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 1.5e-11 75.5 119 35.3
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 3.4e-11 74.3 134 35.8
MBI05_g05343_MAGBIO Magnolia biondii HOM05D000445 ORTHO05D000314 4.5e-11 73.9 123 37.4
arahy.Tifrunner.gnm1.ann1.NU84BI Arachis hypogaea HOM05D000388 ORTHO05D000473 1.3e-10 72.4 185 29.2
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 2.2e-10 71.6 126 33.3
CAN.G999.39 Capsicum annuum HOM05D002660 ORTHO05D003902 2.9e-10 71.2 108 38.0
Peaxi162Scf00625g00037 Petunia axillaris HOM05D002660 ORTHO05D003902 2.9e-10 71.2 184 31.0
PGR142G3646 Punica granatum HOM05D000047 ORTHO05D000589 1.1e-09 69.3 448 23.9
vmacro07682 Vaccinium macrocarpon HOM05D000026 ORTHO05D000127 1.1e-09 69.3 193 29.0
MBI14_g38700_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 1.4e-09 68.9 95 41.1
Cfa023009 Carpinus fangiana HOM05D002660 ORTHO05D013121 2.4e-09 68.2 48 68.8
Nitab4.5_0010333g0110 Nicotiana tabacum HOM05D011968 ORTHO05D014241 2.4e-09 68.2 112 39.3
Lsat_1_v5_gn_8_124640 Lactuca sativa HOM05D002660 ORTHO05D003902 5.4e-09 67.0 90 44.4
Lsat_1_v5_gn_8_93860 Lactuca sativa HOM05D002660 ORTHO05D003902 5.4e-09 67.0 90 44.4
arahy.Tifrunner.gnm1.ann1.4WR8AK Arachis hypogaea HOM05D002660 ORTHO05D003902 7.1e-09 66.6 63 57.1
arahy.Tifrunner.gnm1.ann1.64IP8W Arachis hypogaea HOM05D002660 ORTHO05D003902 7.1e-09 66.6 63 57.1
arahy.Tifrunner.gnm1.ann1.MHP2RT Arachis hypogaea HOM05D002660 ORTHO05D003902 7.1e-09 66.6 63 57.1
arahy.Tifrunner.gnm1.ann1.RJKU2P Arachis hypogaea HOM05D002660 ORTHO05D003902 7.1e-09 66.6 63 57.1
PGR100G0012 Punica granatum HOM05D000047 ORTHO05D000044 7.1e-09 66.6 384 24.2
PGR142G2721 Punica granatum HOM05D000047 ORTHO05D000589 7.1e-09 66.6 384 24.2
MBI14_g38260_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 1.2e-08 65.9 95 40.0
PGR083G2337 Punica granatum HOM05D000047 ORTHO05D007790 1.2e-08 65.9 450 23.1
SGA_v2.0_scaffold400G50856 Striga asiatica HOM05D002660 ORTHO05D003902 1.2e-08 65.9 51 64.7
Oeu021479.1 Olea europaea HOM05D002660 ORTHO05D011706 1.6e-08 65.5 37 67.6
CAN.G950.7 Capsicum annuum HOM05D002660 ORTHO05D003902 4.6e-08 63.9 145 33.1
Oeu022571.1 Olea europaea HOM05D001387 ORTHO05D001250 4.6e-08 63.9 37 70.3
Thecc.09G167400 Theobroma cacao HOM05D000047 ORTHO05D000589 4.6e-08 63.9 403 22.1
PGR142G0258 Punica granatum HOM05D000047 ORTHO05D000589 6.0e-08 63.5 441 23.8
TAR626G0574 Trochodendron aralioides HOM05D002660 ORTHO05D003902 6.0e-08 63.5 126 35.7
arahy.Tifrunner.gnm1.ann1.1F9GAV Arachis hypogaea HOM05D002660 ORTHO05D003902 1.0e-07 62.8 63 54.0
PGR031G0507 Punica granatum HOM05D000047 ORTHO05D000589 1.0e-07 62.8 428 23.8
MBI05_g05346_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 1.3e-07 62.4 116 34.5
Nitab4.5_0013560g0040 Nicotiana tabacum HOM05D011968 ORTHO05D014241 1.8e-07 62.0 113 36.3
CSS0020048 Camellia sinensis var. sinensis HOM05D010691 ORTHO05D000352 2.3e-07 61.6 147 30.6
Nn1g10106 Nelumbo nucifera HOM05D002660 ORTHO05D003902 2.3e-07 61.6 121 37.2
Nn1g10197 Nelumbo nucifera HOM05D002660 ORTHO05D003902 2.3e-07 61.6 121 37.2
PGR031G2164 Punica granatum HOM05D000047 ORTHO05D000589 2.3e-07 61.6 380 24.2
Sopen03g019140 Solanum pennellii HOM05D000047 ORTHO05D000044 2.3e-07 61.6 434 23.0
CSS0000183 Camellia sinensis var. sinensis HOM05D010691 ORTHO05D000352 3.0e-07 61.2 147 30.6
Solyc11g030860.3 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.1e-07 60.5 99 36.4
PGR031G1972 Punica granatum HOM05D000047 ORTHO05D000589 6.7e-07 60.1 419 22.7
SGA_v2.0_scaffold255G45438 Striga asiatica HOM05D002660 ORTHO05D003902 6.7e-07 60.1 45 55.6
CAN.G26.9 Capsicum annuum HOM05D002660 ORTHO05D003902 1.1e-06 59.3 107 33.6
Sed0012925 Sechium edule HOM05D002660 ORTHO05D003902 1.1e-06 59.3 106 34.9
CSS0011427 Camellia sinensis var. sinensis HOM05D010691 ORTHO05D000589 1.5e-06 58.9 147 32.7
CAN.G505.14 Capsicum annuum HOM05D000743 ORTHO05D000580 1.5e-06 58.9 125 35.2
AUR62036961 Chenopodium quinoa HOM05D009273 ORTHO05D000589 1.5e-06 58.9 478 21.8
PGR102G2542 Punica granatum HOM05D000047 ORTHO05D000589 1.5e-06 58.9 421 23.8
Sopen11g022480 Solanum pennellii HOM05D000047 ORTHO05D000589 1.5e-06 58.9 428 23.4
PGR044G1493 Punica granatum HOM05D000047 ORTHO05D000589 1.9e-06 58.5 459 22.7
PGR119G1948 Punica granatum HOM05D000047 ORTHO05D000589 1.9e-06 58.5 395 23.8
Gohir.A06G098104 Gossypium hirsutum HOM05D002660 ORTHO05D003902 2.5e-06 58.2 55 49.1
Nitab4.5_0010586g0020 Nicotiana tabacum HOM05D011968 ORTHO05D014241 2.5e-06 58.2 85 38.8
CSS0017336 Camellia sinensis var. sinensis HOM05D010691 ORTHO05D000352 3.3e-06 57.8 147 30.6
PGR031G1973 Punica granatum HOM05D000047 ORTHO05D000044 3.3e-06 57.8 397 24.2
PGR044G2529 Punica granatum HOM05D000047 ORTHO05D000044 3.3e-06 57.8 397 24.2
PGR119G2436 Punica granatum HOM05D000047 ORTHO05D000044 3.3e-06 57.8 398 24.1
Thecc.10G163100 Theobroma cacao HOM05D000047 ORTHO05D000589 3.3e-06 57.8 158 27.2
CSS0022071 Camellia sinensis var. sinensis HOM05D010691 ORTHO05D012208 4.3e-06 57.4 149 30.2
PGR004G2751 Punica granatum HOM05D000047 ORTHO05D000589 4.3e-06 57.4 420 23.1
PGR083G2666 Punica granatum HOM05D000047 ORTHO05D000589 4.3e-06 57.4 385 22.1
CAN.G505.3 Capsicum annuum HOM05D002660 ORTHO05D003902 5.6e-06 57.0 60 43.3
Cfa021334 Carpinus fangiana HOM05D002660 ORTHO05D003902 5.6e-06 57.0 84 40.5
PGR044G0485 Punica granatum HOM05D000047 ORTHO05D000589 7.4e-06 56.6 425 23.8
Aa31csc1168G10 Aethionema arabicum HOM05D002660 ORTHO05D003902 9.6e-06 56.2 169 24.9
Thhalv10003100m.g Eutrema salsugineum HOM05D002660 ORTHO05D003902 9.6e-06 56.2 118 32.2
Nitab4.5_0012260g0040 Nicotiana tabacum HOM05D002660 ORTHO05D003902 9.6e-06 56.2 47 46.8
PGR083G1005 Punica granatum HOM05D000047 ORTHO05D000044 9.6e-06 56.2 398 24.1
TWI60G0143 Tripterygium wilfordii HOM05D000047 ORTHO05D000044 9.6e-06 56.2 158 27.2


User provided reference genes

Program Settings