Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold479G52250 Striga asiatica HOM05D004473 ORTHO05D005652 2.9e-221 771.5 379 100.0
SalBow1G8010 Salvia bowleyana HOM05D004473 ORTHO05D005652 1.3e-144 516.9 397 68.5
Hma1.2p1_4210F.1_g338470 Hydrangea macrophylla HOM05D004473 ORTHO05D005652 3.6e-131 472.2 397 64.7
Lj2P1239T154 Lonicera japonica HOM05D004473 ORTHO05D005652 3.1e-122 442.6 396 61.4
Hund27810 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.5e-121 440.3 398 60.8
CAN.G939.10 Capsicum annuum HOM05D004473 ORTHO05D005652 3.4e-121 439.1 398 61.8
Hund10282 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.7e-120 436.8 398 60.3
Sopen01g008040 Solanum pennellii HOM05D004473 ORTHO05D005652 1.9e-119 433.3 400 60.8
Hund29659 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.5e-118 429.1 398 59.8
RcHm_v2.0_CPg0502521 Rosa chinensis HOM05D004473 ORTHO05D005652 3.3e-116 422.5 397 59.2
Eucgr.D01147 Eucalyptus grandis HOM05D004473 ORTHO05D005652 5.6e-116 421.8 395 57.7
EL10As2g23210 Beta vulgaris HOM05D004473 ORTHO05D005652 8.2e-115 417.9 398 58.3
Hund29400 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.4e-114 417.2 398 59.3
Hund30056 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.4e-114 417.2 398 59.3
ScUNg0001290 Simmondsia chinensis HOM05D004473 ORTHO05D005652 1.3e-112 410.6 397 57.4
Hund30352 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.7e-112 410.2 381 59.8
Hund29000 Selenicereus undatus HOM05D004473 ORTHO05D005652 8.4e-112 407.9 376 60.4
Potri.013G138201 Populus trichocarpa HOM05D004473 ORTHO05D005652 1.9e-111 406.8 401 57.4
Hund29926 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.5e-111 406.4 371 60.4
DCAR_032465 Daucus carota HOM05D004473 ORTHO05D005652 1.8e-109 400.2 395 57.0
HanXRQChr00c0368g0574161 Helianthus annuus HOM05D004473 ORTHO05D005652 8.7e-109 397.9 391 56.3
HanXRQCPg0579741 Helianthus annuus HOM05D004473 ORTHO05D005652 8.7e-109 397.9 391 56.3
Atru.chr6.757 Acer truncatum HOM05D004473 ORTHO05D005652 8.2e-107 391.3 398 54.0
Lalb_Chr07g0191541 Lupinus albus HOM05D004473 ORTHO05D005652 6.9e-106 388.3 403 54.3
Medtr3g035685 Medicago truncatula HOM05D004473 ORTHO05D005652 2.6e-105 386.3 398 55.3
Medtr4g051280 Medicago truncatula HOM05D004473 ORTHO05D005652 2.6e-105 386.3 398 55.3
HanXRQChr00c0125g0571751 Helianthus annuus HOM05D004473 ORTHO05D005652 7.6e-105 384.8 391 54.7
PGR111G0117 Punica granatum HOM05D004473 ORTHO05D005652 2.9e-104 382.9 396 54.5
Gohir.A04G039120 Gossypium hirsutum HOM05D004473 ORTHO05D005652 8.5e-104 381.3 393 56.7
Gohir.A04G039150 Gossypium hirsutum HOM05D004473 ORTHO05D005652 8.5e-104 381.3 393 56.7
Hund29405 Selenicereus undatus HOM05D004473 ORTHO05D005652 8.5e-104 381.3 370 57.3
Sed0024057 Sechium edule HOM05D004473 ORTHO05D005652 2.7e-102 376.3 386 56.0
Hund28272 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.0e-101 372.9 398 54.0
HanXRQChr11g0326581 Helianthus annuus HOM05D004473 ORTHO05D005652 1.8e-93 347.1 391 51.4
Sed0017792 Sechium edule HOM05D004473 ORTHO05D005652 4.4e-92 342.4 386 52.8
PSO548G0076 Papaver somniferum HOM05D004473 ORTHO05D005652 9.7e-92 341.3 400 49.5
BcaC05g28805 Brassica carinata HOM05D004473 ORTHO05D005652 4.1e-90 335.9 395 50.6
C06p21390 Brassica napus HOM05D004473 ORTHO05D005652 1.5e-89 334.0 394 49.7
BraSC143t45676Z Brassica rapa HOM05D004473 ORTHO05D005652 2.6e-89 333.2 394 49.7
BraSC25t45889Z Brassica rapa HOM05D004473 ORTHO05D005652 2.6e-89 333.2 394 49.7
BraSC151t45687Z Brassica rapa HOM05D004473 ORTHO05D005652 1.0e-88 331.3 393 49.6
LjContig00489g0020099 Lotus japonicus HOM05D004473 ORTHO05D005652 1.3e-88 330.9 400 49.2
Medtr7g021760 Medicago truncatula HOM05D004473 ORTHO05D005652 1.3e-88 330.9 398 50.5
ATCG00040 Arabidopsis thaliana HOM05D004473 ORTHO05D005652 3.8e-88 329.3 394 49.2
Solyc00g500048.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.5e-88 328.2 400 51.5
Solyc00g500131.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.5e-88 328.2 400 51.5
Solyc00g500201.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.5e-88 328.2 400 51.5
Solyc00g500295.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.5e-88 328.2 400 51.5
Solyc00g500330.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 8.5e-88 328.2 400 51.5
TWI34G1450 Tripterygium wilfordii HOM05D004473 ORTHO05D005652 8.5e-88 328.2 333 55.9
Lsat_1_v5_gn_7_76981 Lactuca sativa HOM05D004473 ORTHO05D005652 5.2e-85 318.9 333 53.8
Hund25918 Selenicereus undatus HOM05D004473 ORTHO05D005652 5.2e-85 318.9 295 59.3
CAN.G386.22 Capsicum annuum HOM05D004473 ORTHO05D005652 2.4e-82 310.1 302 57.6
Medtr0002s0390 Medicago truncatula HOM05D004473 ORTHO05D005652 7.7e-81 305.1 402 46.3
LjContig00318g0021272 Lotus japonicus HOM05D004473 ORTHO05D005652 5.0e-80 302.4 407 46.4
Lj2P1238T61 Lonicera japonica HOM05D004473 ORTHO05D005652 5.9e-73 278.9 216 66.2
Eucgr.D00924 Eucalyptus grandis HOM05D004473 ORTHO05D005652 1.0e-72 278.1 332 48.2
Lsat_1_v5_gn_2_89740 Lactuca sativa HOM05D004473 ORTHO05D005652 9.5e-63 245.0 295 49.8
Peaxi162Scf00211g00244 Petunia axillaris HOM05D004473 ORTHO05D005652 1.2e-62 244.6 280 53.6
arahy.Tifrunner.gnm1.ann1.40BINF Arachis hypogaea HOM05D004473 ORTHO05D005652 1.6e-62 244.2 363 43.3
HanXRQChr00c0572g0575931 Helianthus annuus HOM05D004473 ORTHO05D005652 5.7e-60 235.7 278 51.1
Gohir.1Z050066 Gossypium hirsutum HOM05D004473 ORTHO05D005652 7.5e-60 235.3 378 44.4
Gohir.1Z049403 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.7e-59 233.0 405 42.7
Gohir.A08G095662 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.1e-58 231.5 228 57.9
GSVIVG01022885001 Vitis vinifera HOM05D004473 ORTHO05D005652 8.6e-56 221.9 294 44.9
Peaxi162Scf00219g00048 Petunia axillaris HOM05D004473 ORTHO05D001250 5.6e-55 219.2 245 53.1
Hund10683 Selenicereus undatus HOM05D004473 ORTHO05D005652 8.9e-53 211.8 276 48.6
Hund11181 Selenicereus undatus HOM05D004473 ORTHO05D005652 4.4e-52 209.5 392 38.8
Gorai.002G165800 Gossypium raimondii HOM05D001387 ORTHO05D001250 8.3e-43 178.7 277 42.2
Nn2g10392 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.2e-41 174.9 254 46.5
Migut.D01408 Erythranthe guttata HOM05D004473 ORTHO05D005652 7.8e-41 172.2 383 37.3
HanXRQChr00c0524g0575451 Helianthus annuus HOM05D004473 ORTHO05D005652 5.1e-40 169.5 183 55.7
PGSC0003DMG400041047 Solanum tuberosum HOM05D004473 ORTHO05D005652 8.6e-40 168.7 118 68.6
Nn4g24630 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.2e-36 158.3 135 62.2
arahy.Tifrunner.gnm1.ann1.EJ7WQI Arachis hypogaea HOM05D004473 ORTHO05D005652 2.9e-35 153.7 130 63.1
HanXRQChr16g0503961 Helianthus annuus HOM05D004473 ORTHO05D005652 4.9e-35 152.9 131 62.6
Psat0s1330g0240 Pisum sativum HOM05D004473 ORTHO05D005652 1.1e-34 151.8 215 46.0
BcaB03g16404 Brassica carinata HOM05D004473 ORTHO05D005652 7.1e-34 149.1 219 46.6
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 2.1e-33 147.5 157 51.0
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 2.1e-33 147.5 157 51.0
Peaxi162Scf00219g00049 Petunia axillaris HOM05D004473 ORTHO05D005652 7.3e-31 139.0 96 71.9
HanXRQChr00c0165g0572181 Helianthus annuus HOM05D004473 ORTHO05D005652 1.6e-30 137.9 118 64.4
Nn1g08463 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.1e-29 135.2 108 63.0
Medtr7g117940 Medicago truncatula HOM05D004473 ORTHO05D005652 2.0e-28 131.0 104 62.5
Oeu012780.1 Olea europaea HOM05D001387 ORTHO05D001250 2.6e-28 130.6 89 77.5
TPR.G40775 Trifolium pratense HOM05D004473 ORTHO05D005652 7.6e-28 129.0 115 54.8
TPR.G10220 Trifolium pratense HOM05D004473 ORTHO05D005652 1.9e-26 124.4 130 51.5
Thhalv10001851m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 3.2e-26 123.6 143 46.9
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 5.4e-26 122.9 98 60.2
BolC2t10578H Brassica oleracea HOM05D004473 ORTHO05D005652 9.2e-26 122.1 97 61.9
BolSC37t60777H Brassica oleracea HOM05D004473 ORTHO05D005652 9.2e-26 122.1 97 61.9
BolSC45t60885H Brassica oleracea HOM05D004473 ORTHO05D005652 9.2e-26 122.1 97 61.9
BolSC45t60929H Brassica oleracea HOM05D004473 ORTHO05D005652 9.2e-26 122.1 97 61.9
BolSC46t60978H Brassica oleracea HOM05D004473 ORTHO05D005652 9.2e-26 122.1 97 61.9
Solyc09g061390.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.0e-24 118.6 93 66.7
BraSC59t46519Z Brassica rapa HOM05D004473 ORTHO05D005652 7.3e-23 112.5 141 48.2
Medtr7g098060 Medicago truncatula HOM05D004473 ORTHO05D005652 1.4e-21 108.2 125 51.2
Gorai.005G171000 Gossypium raimondii HOM05D004473 ORTHO05D005652 3.1e-21 107.1 81 63.0
HanXRQChr00c0165g0572171 Helianthus annuus HOM05D004473 ORTHO05D005652 4.4e-20 103.2 86 58.1
Atru.chr7.156 Acer truncatum HOM05D004473 ORTHO05D005652 1.9e-18 97.8 83 55.4
arahy.Tifrunner.gnm1.ann1.85ZYV6 Arachis hypogaea HOM05D004473 ORTHO05D005652 4.2e-18 96.7 79 62.0
GSVIVG01022429001 Vitis vinifera HOM05D004473 ORTHO05D005652 1.2e-17 95.1 115 44.3
Gorai.013G056700 Gossypium raimondii HOM05D004473 ORTHO05D005652 6.0e-17 92.8 101 53.5
Gohir.A08G070362 Gossypium hirsutum HOM05D004473 ORTHO05D005652 5.1e-16 89.7 137 46.7
Gorai.001G044100 Gossypium raimondii HOM05D004473 ORTHO05D005652 5.1e-16 89.7 169 42.0
Nitab4.5_0007979g0030 Nicotiana tabacum HOM05D001387 ORTHO05D001250 1.1e-15 88.6 197 35.0
HanXRQChr00c0496g0575171 Helianthus annuus HOM05D004473 ORTHO05D005652 1.5e-15 88.2 84 51.2
Lalb_Chr13g0292931 Lupinus albus HOM05D004473 ORTHO05D005652 3.3e-15 87.0 82 52.4
Nn3g16148 Nelumbo nucifera HOM05D004473 ORTHO05D005652 9.6e-15 85.5 82 57.3
Nitab4.5_0011099g0050 Nicotiana tabacum HOM05D004473 ORTHO05D005652 1.6e-14 84.7 55 76.4
Nitab4.5_0001439g0120 Nicotiana tabacum HOM05D004473 ORTHO05D005652 5.3e-13 79.7 65 67.7
MD15G1438900 Malus domestica HOM05D004473 ORTHO05D005652 2.0e-12 77.8 65 60.0
Gorai.001G230600 Gossypium raimondii HOM05D004473 ORTHO05D005652 1.3e-11 75.1 131 42.0
CAN.G156.6 Capsicum annuum HOM05D004473 ORTHO05D005652 1.7e-11 74.7 58 62.1
Peaxi162Scf00211g00223 Petunia axillaris HOM05D004473 ORTHO05D005652 3.8e-11 73.6 44 81.8
CAN.G219.14 Capsicum annuum HOM05D004473 ORTHO05D005652 4.9e-11 73.2 44 81.8
CAN.G575.33 Capsicum annuum HOM05D004473 ORTHO05D000001 4.9e-11 73.2 44 81.8
CAN.G85.6 Capsicum annuum HOM05D004473 ORTHO05D005652 4.9e-11 73.2 44 81.8
MELO3C027413.2 Cucumis melo HOM05D004473 ORTHO05D005652 6.4e-11 72.8 66 59.1
CAN.G100.39 Capsicum annuum HOM05D004473 ORTHO05D005652 1.4e-10 71.6 44 79.5
MELO3C000879.2 Cucumis melo HOM05D004473 ORTHO05D005652 1.9e-10 71.2 56 60.7
MELO3C027497.2 Cucumis melo HOM05D004473 ORTHO05D005652 1.9e-10 71.2 56 60.7
TPR.G7920 Trifolium pratense HOM05D004473 ORTHO05D005652 3.2e-10 70.5 66 63.6
Oeu051131.1 Olea europaea HOM05D000388 ORTHO05D004227 4.2e-10 70.1 60 58.3
FAN24G2630 Fragaria x ananassa HOM05D004473 ORTHO05D005652 5.4e-10 69.7 85 47.1
Manes.10G075803 Manihot esculenta HOM05D004473 ORTHO05D005652 4.6e-09 66.6 54 55.6
AUR62037881 Chenopodium quinoa HOM05D001387 ORTHO05D001250 5.1e-08 63.2 46 65.2
Gorai.003G179600 Gossypium raimondii HOM05D004473 ORTHO05D005652 5.1e-08 63.2 66 50.0
Oeu022565.1 Olea europaea HOM05D004473 ORTHO05D005652 6.7e-08 62.8 39 82.1
CAN.G130.4 Capsicum annuum HOM05D004473 ORTHO05D005652 8.7e-08 62.4 43 69.8
HanXRQChr16g0503951 Helianthus annuus HOM05D004473 ORTHO05D005652 8.7e-08 62.4 43 65.1
Os11g0517350 Oryza sativa ssp. japonica HOM05D004473 ORTHO05D005652 4.3e-07 60.1 57 50.9
TPR.G16230 Trifolium pratense HOM05D004473 ORTHO05D005652 4.3e-07 60.1 52 61.5
BraSC58t46474Z Brassica rapa HOM05D004473 ORTHO05D005652 5.6e-07 59.7 48 54.2
BolSC49t61206H Brassica oleracea HOM05D004473 ORTHO05D005652 2.1e-06 57.8 43 65.1


User provided reference genes

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