Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold478G52230 Striga asiatica HOM05D004024 ORTHO05D004639 2.0e-101 372.5 192 100.0
SalBow8G0703 Salvia bowleyana HOM05D004024 ORTHO05D004639 2.2e-60 236.1 198 65.7
SalBow8G4424 Salvia bowleyana HOM05D004024 ORTHO05D004639 2.9e-60 235.7 198 65.2
SGA_v2.0_scaffold8G04376 Striga asiatica HOM05D004024 ORTHO05D004639 3.8e-60 235.3 198 67.7
MSTRG.6976 Avicennia marina HOM05D004024 ORTHO05D004639 2.3e-57 226.1 199 63.8
Migut.H01776 Erythranthe guttata HOM05D004024 ORTHO05D004639 1.3e-55 220.3 199 62.3
Migut.M01685 Erythranthe guttata HOM05D004024 ORTHO05D004639 5.0e-52 208.4 196 59.7
Nitab4.5_0008232g0030 Nicotiana tabacum HOM05D004024 ORTHO05D004639 3.6e-50 202.2 201 57.7
Oeu034550.1 Olea europaea HOM05D004024 ORTHO05D004639 3.6e-50 202.2 201 57.7
Oeu054320.1 Olea europaea HOM05D004024 ORTHO05D004639 4.7e-50 201.8 202 56.4
TAR626G0012 Trochodendron aralioides HOM05D004024 ORTHO05D004639 6.1e-50 201.4 162 61.7
Dinv40827 Davidia involucrata HOM05D004024 ORTHO05D004639 7.9e-50 201.1 166 62.0
Hma1.2p1_0036F.1_g022840 Hydrangea macrophylla HOM05D004024 ORTHO05D004639 3.9e-49 198.7 173 60.7
Nitab4.5_0001160g0210 Nicotiana tabacum HOM05D004024 ORTHO05D004639 8.8e-49 197.6 201 56.2
CSS0029510 Camellia sinensis var. sinensis HOM05D004024 ORTHO05D004639 2.6e-48 196.1 195 54.4
CSS0039941 Camellia sinensis var. sinensis HOM05D004024 ORTHO05D004639 2.6e-48 196.1 195 54.4
Cc05_g14570 Coffea canephora HOM05D004024 ORTHO05D004639 3.3e-48 195.7 178 60.7
PGSC0003DMG401022191 Solanum tuberosum HOM05D004024 ORTHO05D004639 3.3e-48 195.7 202 55.9
Solyc07g065200.3 Solanum lycopersicum HOM05D004024 ORTHO05D004639 5.7e-48 194.9 202 55.4
Sopen07g033420 Solanum pennellii HOM05D004024 ORTHO05D004639 5.7e-48 194.9 202 55.4
Peaxi162Scf00285g00929 Petunia axillaris HOM05D004024 ORTHO05D004639 9.7e-48 194.1 203 55.2
Actinidia35382 Actinidia chinensis HOM05D004024 ORTHO05D004639 1.7e-47 193.4 166 60.2
CAN.G337.35 Capsicum annuum HOM05D004024 ORTHO05D004639 6.3e-47 191.4 201 54.7
Actinidia39078 Actinidia chinensis HOM05D004024 ORTHO05D004639 1.1e-46 190.7 166 59.6
PGR031G2461 Punica granatum HOM05D004024 ORTHO05D004639 1.8e-46 189.9 190 55.3
Eucgr.F03519 Eucalyptus grandis HOM05D004024 ORTHO05D004639 3.1e-46 189.1 199 54.3
CiPaw.11G199900 Carya illinoinensis HOM05D004024 ORTHO05D004639 5.9e-45 184.9 166 57.2
Lj8A175G77 Lonicera japonica HOM05D004024 ORTHO05D004639 7.7e-45 184.5 169 59.2
Rhsim06G0225900 Rhododendron simsii HOM05D004024 ORTHO05D004639 1.3e-44 183.7 186 51.6
MD11G1206200 Malus domestica HOM05D004024 ORTHO05D004639 1.7e-44 183.3 193 56.5
MBI16_g42313_MAGBIO Magnolia biondii HOM05D004024 ORTHO05D004639 5.0e-44 181.8 192 53.1
Ca_06362_v3 Cicer arietinum L. HOM05D004024 ORTHO05D004639 6.5e-44 181.4 179 56.4
Gohir.A01G086400 Gossypium hirsutum HOM05D004024 ORTHO05D004639 6.5e-44 181.4 195 53.3
CANSAT11G0326 Cannabis sativa HOM05D004024 ORTHO05D004639 1.1e-43 180.6 165 57.0
ECA246G1790 Erigeron canadensis HOM05D004024 ORTHO05D004639 1.1e-43 180.6 196 52.6
Gohir.D13G139900 Gossypium hirsutum HOM05D004024 ORTHO05D004639 1.4e-43 180.3 200 53.0
Gorai.002G095600 Gossypium raimondii HOM05D004024 ORTHO05D004639 1.4e-43 180.3 195 52.8
Gorai.013G156500 Gossypium raimondii HOM05D004024 ORTHO05D004639 1.4e-43 180.3 200 53.0
HanXRQChr11g0324641 Helianthus annuus HOM05D004024 ORTHO05D004639 1.9e-43 179.9 199 49.7
Haze_09776 Corylus avellana HOM05D004024 ORTHO05D004639 3.2e-43 179.1 184 53.8
Potri.001G360300 Populus trichocarpa HOM05D004024 ORTHO05D004639 3.2e-43 179.1 170 59.4
Thecc.07G023700 Theobroma cacao HOM05D004024 ORTHO05D004639 3.2e-43 179.1 157 60.5
Gohir.D01G072600 Gossypium hirsutum HOM05D004024 ORTHO05D004639 4.2e-43 178.7 195 52.3
Medtr5g094300 Medicago truncatula HOM05D004024 ORTHO05D004639 5.5e-43 178.3 189 54.0
Cfa020239 Carpinus fangiana HOM05D004024 ORTHO05D004639 7.2e-43 177.9 193 53.4
PGR083G0593 Punica granatum HOM05D004024 ORTHO05D004639 7.2e-43 177.9 203 52.2
Prupe.4G231300 Prunus persica HOM05D004024 ORTHO05D004639 9.4e-43 177.6 160 60.6
FAN25G0894 Fragaria x ananassa HOM05D004024 ORTHO05D004639 1.2e-42 177.2 191 52.9
Lsat_1_v5_gn_5_3461 Lactuca sativa HOM05D004024 ORTHO05D004639 1.2e-42 177.2 157 58.0
MD03G1189900 Malus domestica HOM05D004024 ORTHO05D004639 1.2e-42 177.2 196 52.6
Manes.15G064200 Manihot esculenta HOM05D004024 ORTHO05D004639 1.2e-42 177.2 203 50.7
Potri.011G088500 Populus trichocarpa HOM05D004024 ORTHO05D004639 1.2e-42 177.2 208 51.0
unitig_85.g27339 Utricularia gibba HOM05D004024 ORTHO05D004639 1.2e-42 177.2 200 49.5
arahy.Tifrunner.gnm1.ann1.NPZ9GD Arachis hypogaea HOM05D004024 ORTHO05D004639 1.6e-42 176.8 178 55.1
FAN11G0159 Fragaria x ananassa HOM05D004024 ORTHO05D004639 1.6e-42 176.8 191 52.4
FAN21G2056 Fragaria x ananassa HOM05D004024 ORTHO05D004639 1.6e-42 176.8 191 52.9
HanXRQChr05g0159961 Helianthus annuus HOM05D004024 ORTHO05D004639 1.6e-42 176.8 178 53.4
Sabra16G0237800 Salix brachista HOM05D004024 ORTHO05D004639 1.6e-42 176.8 202 53.0
vmacro11567 Vaccinium macrocarpon HOM05D004024 ORTHO05D004639 1.6e-42 176.8 164 55.5
Manes.03G134000 Manihot esculenta HOM05D004024 ORTHO05D004639 3.6e-42 175.6 179 55.3
LjContig00272g0016413 Lotus japonicus HOM05D004024 ORTHO05D004639 6.1e-42 174.9 189 52.4
RcHm_v2.0_Chr5g0042411 Rosa chinensis HOM05D004024 ORTHO05D004639 8.0e-42 174.5 172 55.8
Sed0002582 Sechium edule HOM05D004024 ORTHO05D004639 8.0e-42 174.5 190 53.2
VMungo0647G2266 Vigna mungo HOM05D004024 ORTHO05D004639 8.0e-42 174.5 180 53.9
FAN16G1414 Fragaria x ananassa HOM05D004024 ORTHO05D004639 1.0e-41 174.1 197 51.3
CARHR234270 Cardamine hirsuta HOM05D004024 ORTHO05D004639 1.4e-41 173.7 195 51.3
Glyma.02G296700 Glycine max HOM05D004024 ORTHO05D004639 1.4e-41 173.7 180 55.0
Gohir.A13G135400 Gossypium hirsutum HOM05D004024 ORTHO05D004639 1.4e-41 173.7 200 52.0
QL08p008635 Quercus lobata HOM05D004024 ORTHO05D004639 1.4e-41 173.7 166 55.4
Aqoxy1G04026 Aquilegia oxysepala HOM05D004024 ORTHO05D004639 2.3e-41 172.9 167 52.7
THA.LOC104811646 Tarenaya hassleriana HOM05D004024 ORTHO05D004639 3.0e-41 172.6 164 56.7
AT4G26670 Arabidopsis thaliana HOM05D004024 ORTHO05D004639 3.9e-41 172.2 166 55.4
arahy.Tifrunner.gnm1.ann1.01HUHH Arachis hypogaea HOM05D004024 ORTHO05D004639 3.9e-41 172.2 193 51.8
AL7G26210 Arabidopsis lyrata HOM05D004024 ORTHO05D004639 6.7e-41 171.4 194 51.0
EL10Ac4g07627 Beta vulgaris HOM05D004024 ORTHO05D004639 8.8e-41 171.0 192 49.5
TWI39G0215 Tripterygium wilfordii HOM05D004024 ORTHO05D004639 8.8e-41 171.0 181 55.2
BcaC09g52251 Brassica carinata HOM05D004024 ORTHO05D004639 1.1e-40 170.6 199 52.3
CDE04G2600 Ceratophyllum demersum HOM05D004024 ORTHO05D004639 1.5e-40 170.2 186 50.5
COL.COLO4_09773 Corchorus olitorius HOM05D004024 ORTHO05D004639 2.0e-40 169.9 175 56.6
BolC3t14065H Brassica oleracea HOM05D004024 ORTHO05D004639 3.3e-40 169.1 168 57.1
Psat0s4319g0040 Pisum sativum HOM05D004024 ORTHO05D004639 3.3e-40 169.1 176 53.4
GSVIVG01037765001 Vitis vinifera HOM05D004024 ORTHO05D004639 3.3e-40 169.1 141 60.3
A03p14010 Brassica napus HOM05D004024 ORTHO05D004639 4.4e-40 168.7 164 56.1
C03p16450 Brassica napus HOM05D004024 ORTHO05D004639 4.4e-40 168.7 164 56.7
Carub.0008s1586 Capsella rubella HOM05D004024 ORTHO05D004639 4.4e-40 168.7 196 47.4
BcaC01g06372 Brassica carinata HOM05D004024 ORTHO05D004639 7.4e-40 167.9 164 56.1
BcaC09g50630 Brassica carinata HOM05D004024 ORTHO05D004639 7.4e-40 167.9 194 51.0
C01p22720 Brassica napus HOM05D004024 ORTHO05D004639 7.4e-40 167.9 194 51.0
BolC1t02201H Brassica oleracea HOM05D004024 ORTHO05D004639 7.4e-40 167.9 194 51.0
Phvul.008G274600 Phaseolus vulgaris HOM05D004024 ORTHO05D004639 7.4e-40 167.9 200 49.5
MELO3C014143.2 Cucumis melo HOM05D004024 ORTHO05D004639 9.7e-40 167.5 192 52.1
Lalb_Chr20g0116251 Lupinus albus HOM05D004024 ORTHO05D004639 9.7e-40 167.5 207 50.2
BcaB03g12503 Brassica carinata HOM05D004024 ORTHO05D004639 1.3e-39 167.2 206 48.1
FAN25G3281 Fragaria x ananassa HOM05D004024 ORTHO05D004639 1.3e-39 167.2 206 49.0
Glyma.14G016900 Glycine max HOM05D004024 ORTHO05D004639 2.2e-39 166.4 200 51.0
Sp6g17400 Schrenkiella parvula HOM05D004024 ORTHO05D004639 2.2e-39 166.4 189 52.4
DCAR_013207 Daucus carota HOM05D001671 ORTHO05D004639 2.8e-39 166.0 170 54.1
Sp7g24640 Schrenkiella parvula HOM05D004024 ORTHO05D004639 2.8e-39 166.0 194 49.5
TPR.G31724 Trifolium pratense HOM05D004024 ORTHO05D004639 3.7e-39 165.6 184 50.5
ClCG10G004660 Citrullus lanatus HOM05D004024 ORTHO05D004639 4.8e-39 165.2 218 49.1
ATR0712G010 Amborella trichopoda HOM05D004024 ORTHO05D004639 6.3e-39 164.9 202 48.0
Gohir.A11G277566 Gossypium hirsutum HOM05D004024 ORTHO05D004639 6.3e-39 164.9 159 54.7
CARHR268820 Cardamine hirsuta HOM05D004024 ORTHO05D004639 8.2e-39 164.5 202 47.5
Duzib268G0935 Durio zibethinus HOM05D004024 ORTHO05D004639 8.2e-39 164.5 193 51.3
BraA01t01747Z Brassica rapa HOM05D004024 ORTHO05D004639 1.4e-38 163.7 189 50.3
HPP92_014278 Vanilla planifolia HOM05D004024 ORTHO05D004639 1.4e-38 163.7 165 53.9
DCAR_017098 Daucus carota HOM05D004024 ORTHO05D004639 1.8e-38 163.3 187 51.3
Atru.chr2.3628 Acer truncatum HOM05D004024 ORTHO05D004639 3.1e-38 162.5 178 51.1
Ah.06g181090 Amaranthus hybridus HOM05D004024 ORTHO05D004639 4.1e-38 162.2 173 49.7
AT5G55510 Arabidopsis thaliana HOM05D004024 ORTHO05D004639 4.1e-38 162.2 191 48.7
PSO210G2058 Papaver somniferum HOM05D004024 ORTHO05D004639 4.1e-38 162.2 190 49.5
HPP92_024489 Vanilla planifolia HOM05D004024 ORTHO05D004639 4.1e-38 162.2 163 54.0
Ciclev10009483m.g Citrus clementina HOM05D004024 ORTHO05D004639 7.0e-38 161.4 164 51.8
PSO302G0156 Papaver somniferum HOM05D004024 ORTHO05D004639 7.0e-38 161.4 187 49.7
Hund23145 Selenicereus undatus HOM05D004024 ORTHO05D004639 7.0e-38 161.4 156 51.3
AL8G31060 Arabidopsis lyrata HOM05D004024 ORTHO05D004639 9.1e-38 161.0 186 49.5
TWI38G2360 Tripterygium wilfordii HOM05D004024 ORTHO05D004639 9.1e-38 161.0 202 50.0
CsaV3_3G004470 Cucumis sativus L. HOM05D004024 ORTHO05D004639 1.2e-37 160.6 189 50.3
Carub.0007s1420 Capsella rubella HOM05D004024 ORTHO05D004639 2.0e-37 159.8 194 49.0
CDE05G1543 Ceratophyllum demersum HOM05D004024 ORTHO05D004639 2.0e-37 159.8 181 50.8
Aa31LG5G12280 Aethionema arabicum HOM05D004024 ORTHO05D004639 2.6e-37 159.5 197 51.8
arahy.Tifrunner.gnm1.ann1.M3IDM0 Arachis hypogaea HOM05D004024 ORTHO05D004639 4.5e-37 158.7 210 48.1
Cpa.g.sc12.205 Carica papaya HOM05D004024 ORTHO05D004639 7.7e-37 157.9 203 48.8
BcaB08g35907 Brassica carinata HOM05D004024 ORTHO05D001781 1.0e-36 157.5 200 46.5
A01p17920 Brassica napus HOM05D004024 ORTHO05D004639 1.3e-36 157.1 195 49.2
C09p46180 Brassica napus HOM05D004024 ORTHO05D004639 2.2e-36 156.4 200 47.0
BraA10t43363Z Brassica rapa HOM05D004024 ORTHO05D004639 2.2e-36 156.4 200 47.5
AUR62015937 Chenopodium quinoa HOM05D004024 ORTHO05D004639 2.2e-36 156.4 195 45.1
A10p12590 Brassica napus HOM05D004024 ORTHO05D004639 5.0e-36 155.2 204 48.0
BraA03t10700Z Brassica rapa HOM05D004024 ORTHO05D004639 6.5e-36 154.8 186 48.9
Lalb_Chr06g0174041 Lupinus albus HOM05D004024 ORTHO05D004639 6.5e-36 154.8 207 46.9
CDE02G1960 Ceratophyllum demersum HOM05D004024 ORTHO05D004639 1.9e-35 153.3 186 47.8
Actinidia05039 Actinidia chinensis HOM05D004024 ORTHO05D004639 9.4e-35 151.0 182 46.7
AUR62040672 Chenopodium quinoa HOM05D004024 ORTHO05D004639 1.2e-34 150.6 189 45.0
BolC9t57483H Brassica oleracea HOM05D004024 ORTHO05D004639 6.1e-34 148.3 210 44.8
arahy.Tifrunner.gnm1.ann1.IM9LRW Arachis hypogaea HOM05D004024 ORTHO05D004639 8.0e-34 147.9 236 43.2
Zm00001eb004090 Zea mays HOM05D004024 ORTHO05D004639 1.8e-33 146.7 171 48.5
Lj6g0021305 Lotus japonicus HOM05D004024 ORTHO05D004639 5.2e-33 145.2 184 45.7
Os03g0194500 Oryza sativa ssp. japonica HOM05D004024 ORTHO05D004639 1.5e-32 143.7 158 50.0
Os12g0514900 Oryza sativa ssp. japonica HOM05D004024 ORTHO05D004639 2.0e-32 143.3 177 45.8
Sc07g0002950 Simmondsia chinensis HOM05D004024 ORTHO05D004639 4.4e-32 142.1 134 53.0
Rhsim04G0015500 Rhododendron simsii HOM05D001671 ORTHO05D004639 5.7e-32 141.7 211 43.6
Aa31LG3G11450 Aethionema arabicum HOM05D004024 ORTHO05D004639 2.8e-31 139.4 253 39.1
Zm00001eb401140 Zea mays HOM05D004024 ORTHO05D004639 4.8e-31 138.7 189 45.5
SEGI_05638 Sequoiadendron giganteum HOM05D004024 ORTHO05D004639 1.1e-30 137.5 147 51.0
Glyma.18G089100 Glycine max HOM05D004024 ORTHO05D004639 5.9e-29 131.7 163 47.9
Gorai.007G311300 Gossypium raimondii HOM05D004024 ORTHO05D004639 6.5e-28 128.3 134 53.7
Zm00001eb264400 Zea mays HOM05D004024 ORTHO05D004639 7.2e-27 124.8 187 44.9
Glyma.18G087600 Glycine max HOM05D004024 ORTHO05D004639 9.4e-27 124.4 181 47.0
Zm00001eb027670 Zea mays HOM05D004024 ORTHO05D004639 3.6e-26 122.5 168 42.9
Zm00001eb410970 Zea mays HOM05D004024 ORTHO05D004639 6.1e-26 121.7 188 44.1
Glyma.08G323000 Glycine max HOM05D004024 ORTHO05D004639 1.0e-25 120.9 151 47.0
MD00G1122600 Malus domestica HOM05D004024 ORTHO05D004639 5.2e-25 118.6 128 50.8
Mapoly0060s0085 Marchantia polymorpha HOM05D004024 ORTHO05D004639 6.8e-25 118.2 149 45.6
COL.COLO4_09508 Corchorus olitorius HOM05D002899 ORTHO05D003850 2.0e-24 116.7 154 49.4
Pp3c23_11700 Physcomitrium patens HOM05D004024 ORTHO05D004639 2.0e-24 116.7 185 39.5
CBR_g19503 Chara braunii HOM05D004024 ORTHO05D004639 5.7e-24 115.2 203 40.9
Pp3c24_12690 Physcomitrium patens HOM05D004024 ORTHO05D004639 9.8e-24 114.4 186 38.2
VMungo0540G1873 Vigna mungo HOM05D004024 ORTHO05D004639 1.7e-23 113.6 138 50.7
Glyma.18G086800 Glycine max HOM05D004024 ORTHO05D004639 4.8e-23 112.1 111 53.2
Nn1g07427 Nelumbo nucifera HOM05D004024 ORTHO05D004639 3.1e-22 109.4 119 52.9
SMO115G0139 Selaginella moellendorffii HOM05D004024 ORTHO05D004639 7.0e-22 108.2 117 50.4
arahy.Tifrunner.gnm1.ann1.4LJY9R Arachis hypogaea HOM05D004024 ORTHO05D004639 2.0e-21 106.7 95 60.0
Nn1g03268 Nelumbo nucifera HOM05D004024 ORTHO05D004639 1.0e-20 104.4 121 51.2
AagrBONN_evm.TU.Sc2ySwM_344.687 Anthoceros agrestis HOM05D000165 ORTHO05D005214 1.7e-20 103.6 149 40.3
Thhalv10026251m.g Eutrema salsugineum HOM05D004024 ORTHO05D004639 2.9e-20 102.8 134 47.0
FvH4_3g23900 Fragaria vesca HOM05D004024 ORTHO05D004639 3.8e-20 102.4 122 50.8
Phvul.006G049300 Phaseolus vulgaris HOM05D004024 ORTHO05D004639 6.6e-20 101.7 111 49.5
Hund01922 Selenicereus undatus HOM05D004024 ORTHO05D004639 4.7e-18 95.5 175 33.7
MD06G1020100 Malus domestica HOM05D004024 ORTHO05D004639 6.8e-17 91.7 84 60.7
MD05G1006500 Malus domestica HOM05D004024 ORTHO05D004639 2.4e-14 83.2 53 71.7
VMungo1127G1392 Vigna mungo HOM05D004024 ORTHO05D004639 2.4e-14 83.2 134 44.0
SGA_v2.0_scaffold190G40413 Striga asiatica HOM05D003847 ORTHO05D004976 4.5e-13 79.0 59 64.4
arahy.Tifrunner.gnm1.ann1.AMB9RJ Arachis hypogaea HOM05D004024 ORTHO05D004639 2.8e-10 69.7 100 44.0
CDE06G2384 Ceratophyllum demersum HOM05D000285 ORTHO05D000241 6.8e-09 65.1 80 47.5
Sabra11G0074500 Salix brachista HOM05D004024 ORTHO05D004639 7.0e-06 55.1 64 51.6


User provided reference genes

Program Settings