Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 1.1e-308 1062.4 510 100.0
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 7.6e-233 810.4 510 76.7
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 3.0e-221 771.9 512 74.6
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 1.6e-219 766.1 542 70.1
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 3.7e-219 765.0 542 69.9
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 2.3e-213 745.7 517 70.0
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.9e-212 742.7 519 69.7
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 1.3e-211 740.0 524 67.6
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 1.3e-211 740.0 525 68.8
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 3.7e-211 738.4 515 69.5
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 1.4e-210 736.5 525 69.0
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 1.4e-210 736.5 527 67.7
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 9.0e-210 733.8 526 68.1
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 1.0e-208 730.3 527 67.6
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 6.3e-203 711.1 516 66.9
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 6.3e-203 711.1 516 66.9
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 6.3e-203 711.1 522 67.0
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 7.7e-201 704.1 516 66.5
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 7.7e-201 704.1 516 66.5
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 2.5e-199 699.1 522 66.7
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 2.5e-199 699.1 522 66.7
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 9.4e-199 697.2 517 66.7
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 1.6e-198 696.4 508 67.1
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 3.6e-198 695.3 521 65.8
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 7.9e-198 694.1 516 65.1
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 7.9e-198 694.1 520 66.2
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 3.0e-197 692.2 516 65.5
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 3.0e-197 692.2 514 65.8
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.1e-196 690.3 514 66.3
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 1.5e-196 689.9 513 66.5
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 5.7e-196 688.0 512 67.0
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 7.4e-196 687.6 518 66.0
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 9.7e-196 687.2 518 65.8
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 1.3e-195 686.8 511 66.5
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 1.3e-195 686.8 515 63.9
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.4e-194 683.3 516 66.5
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.4e-194 683.3 518 65.4
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 4.1e-194 681.8 515 65.8
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 5.3e-194 681.4 517 64.6
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 6.9e-194 681.0 516 66.7
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 1.5e-193 679.9 514 65.8
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 5.9e-193 677.9 516 66.3
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 5.0e-192 674.9 519 64.5
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.1e-191 673.7 522 64.8
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 1.9e-191 672.9 524 63.4
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 5.5e-191 671.4 518 62.7
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 9.4e-191 670.6 529 64.7
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 2.7e-190 669.1 513 63.7
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 1.4e-189 666.8 518 63.9
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 1.4e-189 666.8 517 62.7
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 2.3e-189 666.0 516 63.6
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 2.3e-189 666.0 526 63.5
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 8.8e-189 664.1 516 62.8
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 1.1e-188 663.7 512 63.7
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 1.1e-188 663.7 520 63.7
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 2.6e-188 662.5 524 63.4
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 3.3e-188 662.1 510 64.9
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 3.3e-188 662.1 521 63.0
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 2.4e-186 656.0 522 60.9
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 3.1e-186 655.6 512 62.3
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 9.1e-186 654.1 533 59.7
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 9.1e-186 654.1 498 65.5
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 9.1e-186 654.1 512 63.1
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 2.0e-185 652.9 526 63.3
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 3.5e-185 652.1 518 62.0
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 3.5e-185 652.1 520 61.9
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 1.3e-184 650.2 534 61.2
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 1.9e-183 646.4 542 58.9
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 4.2e-183 645.2 506 63.6
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 5.5e-183 644.8 520 62.1
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 7.2e-183 644.4 520 60.4
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 9.4e-183 644.0 550 58.2
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 9.4e-183 644.0 506 63.6
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 1.2e-182 643.7 541 58.6
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 3.6e-182 642.1 545 58.9
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 2.3e-181 639.4 536 58.8
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 5.2e-181 638.3 510 62.0
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 8.8e-181 637.5 519 62.4
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 1.2e-180 637.1 536 58.6
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 4.4e-180 635.2 533 58.3
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 4.4e-180 635.2 509 60.5
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 9.7e-180 634.0 548 57.8
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 1.3e-179 633.6 513 60.2
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 6.3e-179 631.3 523 59.1
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 6.3e-179 631.3 517 60.0
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 2.4e-178 629.4 518 61.0
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 3.1e-178 629.0 535 57.8
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 9.1e-178 627.5 515 60.0
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.6e-177 626.7 521 60.3
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.0e-176 624.0 521 60.8
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 8.5e-176 620.9 521 60.1
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 1.4e-173 613.6 545 58.3
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 5.2e-173 611.7 524 57.6
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 9.8e-172 607.4 522 58.8
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 9.8e-172 607.4 512 58.4
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 2.2e-171 606.3 463 62.2
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 2.4e-170 602.8 536 56.5
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 3.5e-169 599.0 514 58.4
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 6.5e-168 594.7 536 56.3
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 1.5e-167 593.6 525 57.5
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 1.5e-167 593.6 532 56.0
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 1.9e-167 593.2 519 57.8
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.6e-166 590.1 493 58.0
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 6.1e-166 588.2 517 58.8
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.8e-165 586.6 484 59.1
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 8.9e-165 584.3 415 67.0
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 2.5e-159 566.2 393 67.7
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 1.4e-157 560.5 477 60.0
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 6.4e-155 551.6 447 61.1
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 1.1e-154 550.8 446 58.5
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 2.7e-145 519.6 312 76.6
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 3.9e-144 515.8 434 58.1
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 4.7e-142 508.8 383 62.7
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 6.2e-142 508.4 446 56.7
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 2.1e-137 493.4 312 71.2
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 9.9e-132 474.6 292 73.3
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 2.7e-129 466.5 304 72.0
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 3.9e-128 462.6 312 67.9
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 1.1e-127 461.1 521 44.5
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 3.1e-117 426.4 281 68.0
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 1.1e-114 417.9 507 42.8
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 1.2e-113 414.5 385 55.1
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 2.8e-110 403.3 569 38.8
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 8.4e-107 391.7 242 77.7
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 1.5e-100 370.9 247 70.0
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 3.8e-99 366.3 239 71.1
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 5.7e-87 325.9 521 39.9
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 5.9e-84 315.8 316 51.6
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 1.3e-83 314.7 339 50.7
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 7.9e-81 305.4 199 72.9
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 5.1e-80 302.8 202 71.3
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 6.3e-78 295.8 229 64.2
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 3.7e-70 270.0 271 52.8
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 1.8e-64 251.1 167 71.9
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 1.1e-53 215.3 206 55.3
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 1.8e-53 214.5 204 56.9
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 1.0e-51 208.8 157 63.7
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 2.9e-51 207.2 218 50.9
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 7.2e-50 202.6 129 68.2
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 7.2e-50 202.6 129 68.2
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-49 201.4 414 29.5
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 2.8e-49 200.7 124 70.2
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 6.8e-48 196.1 172 57.0
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 1.2e-44 185.3 189 46.0
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 5.8e-39 166.4 109 70.6
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 7.5e-39 166.0 106 66.0
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 5.0e-35 153.3 224 40.2
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 4.3e-34 150.2 156 47.4
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.2e-33 148.7 174 47.7
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 6.2e-33 146.4 167 47.3
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 6.8e-32 142.9 268 36.2
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 1.7e-30 138.3 261 36.0
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.4e-29 135.2 115 58.3
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 4.6e-28 130.2 76 71.1
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 4.6e-28 130.2 76 71.1
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 2.3e-27 127.9 172 45.9
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 1.2e-25 122.1 85 62.4
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 2.8e-25 120.9 95 63.2
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 5.4e-21 106.7 91 60.4
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 8.1e-17 92.8 72 61.1
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 1.4e-16 92.0 99 49.5
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 1.8e-16 91.7 85 54.1
AagrBONN_evm.TU.Sc2ySwM_228.1050 Anthoceros agrestis HOM05D004336 ORTHO05D005367 1.8e-08 65.1 214 29.0
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 2.0e-07 61.6 34 88.2


User provided reference genes

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