Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 0.0e+00 1948.3 1092 100.0
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 2.5e-164 583.9 795 49.4
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 1.8e-143 514.6 909 47.0
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 4.6e-118 430.3 819 38.1
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 2.1e-107 394.8 721 43.0
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 6.0e-102 376.7 793 35.7
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.9e-100 371.7 799 35.7
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 4.3e-100 370.5 800 36.6
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 2.1e-99 368.2 814 35.4
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 2.2e-96 358.2 791 34.8
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 2.9e-96 357.8 843 35.3
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 6.0e-94 350.1 803 34.7
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 6.0e-94 350.1 802 34.8
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 2.3e-93 348.2 796 34.9
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 8.7e-93 346.3 704 36.8
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 2.5e-92 344.7 825 33.7
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 4.8e-91 340.5 802 33.9
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 6.2e-91 340.1 805 34.4
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 8.1e-91 339.7 710 36.8
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 1.8e-90 338.6 708 36.0
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 3.1e-90 337.8 782 35.4
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 9.0e-90 336.3 789 33.1
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 7.6e-89 333.2 787 33.5
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 3.8e-88 330.9 788 33.0
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 1.9e-87 328.6 646 36.7
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 3.2e-87 327.8 801 32.8
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 4.2e-87 327.4 788 33.5
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 7.1e-87 326.6 810 34.3
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 1.8e-85 322.0 724 35.6
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 2.3e-85 321.6 819 33.6
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 3.0e-85 321.2 702 34.8
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 3.9e-85 320.9 827 30.4
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 5.1e-85 320.5 821 32.2
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 5.1e-85 320.5 790 32.8
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.1e-84 319.3 829 32.0
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.5e-84 318.2 794 34.4
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 9.6e-84 316.2 784 32.4
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.6e-83 315.5 751 33.4
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 3.7e-83 314.3 806 31.4
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 4.8e-83 313.9 860 31.9
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 4.0e-82 310.8 792 32.8
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 5.3e-82 310.5 812 31.4
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 2.0e-81 308.5 800 31.6
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 2.6e-81 308.1 788 32.7
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 6.5e-80 303.5 908 30.0
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.2e-79 301.2 819 31.1
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 3.2e-79 301.2 845 31.6
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 7.1e-79 300.1 715 33.1
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 9.3e-79 299.7 831 31.0
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 6.0e-78 297.0 811 31.8
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 7.9e-78 296.6 832 31.0
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 1.0e-77 296.2 816 30.6
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 2.3e-77 295.0 834 29.5
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 6.7e-77 293.5 799 31.5
Nitab4.5_0001978g0040 Nicotiana tabacum HOM05D004112 ORTHO05D004739 2.5e-76 291.6 956 28.5
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 5.7e-76 290.4 809 30.0
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 3.7e-75 287.7 803 32.0
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 1.8e-74 285.4 945 27.9
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 3.1e-74 284.6 821 30.6
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 4.1e-74 284.3 853 30.2
Solyc05g013740.3 Solanum lycopersicum HOM05D004112 ORTHO05D004739 4.1e-74 284.3 937 27.9
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 6.9e-74 283.5 797 30.5
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 1.5e-73 282.3 809 30.7
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.9e-73 280.4 721 34.3
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 8.5e-72 276.6 841 29.5
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 2.5e-71 275.0 817 29.1
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 5.5e-71 273.9 813 36.5
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.2e-70 272.7 826 30.3
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 2.7e-70 271.6 780 30.9
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 2.7e-70 271.6 800 30.1
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 2.7e-70 271.6 822 30.7
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 2.7e-70 271.6 711 32.6
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 3.6e-70 271.2 778 31.0
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 1.8e-69 268.9 789 29.9
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 2.2e-67 261.9 791 30.2
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 6.3e-67 260.4 795 30.9
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.8e-66 258.8 791 30.1
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 3.1e-66 258.1 787 29.7
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 1.2e-65 256.1 794 29.8
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 2.0e-65 255.4 689 32.4
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 2.6e-65 255.0 783 30.1
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 5.9e-65 253.8 686 31.6
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 6.5e-64 250.4 791 28.7
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 8.5e-64 250.0 790 29.1
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 4.2e-63 247.7 800 30.8
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 9.4e-63 246.5 791 28.2
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 1.4e-61 242.7 713 30.2
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 1.8e-61 242.3 798 28.6
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 6.7e-61 240.4 781 29.8
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 2.6e-60 238.4 713 29.7
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 3.3e-60 238.0 784 29.1
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 9.7e-60 236.5 850 28.7
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 2.8e-59 235.0 711 29.5
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 2.8e-59 235.0 638 32.9
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 4.8e-59 234.2 873 29.8
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.1e-58 233.0 832 29.0
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 9.1e-58 229.9 734 31.6
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 7.7e-57 226.9 720 29.2
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 1.3e-56 226.1 752 31.0
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 1.1e-55 223.0 672 31.0
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 1.1e-55 223.0 697 29.4
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 1.1e-55 223.0 950 26.9
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 4.2e-55 221.1 396 37.1
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 3.6e-54 218.0 709 28.8
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 4.7e-54 217.6 334 44.3
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 1.0e-53 216.5 837 27.8
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 1.4e-53 216.1 781 27.5
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 1.8e-53 215.7 323 43.7
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 3.9e-53 214.5 816 27.1
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 5.3e-50 204.1 672 30.8
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.2e-49 203.0 728 29.3
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 5.9e-49 200.7 853 26.6
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 3.8e-48 198.0 527 31.9
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 5.0e-48 197.6 788 27.8
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 1.9e-47 195.7 304 41.4
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 6.1e-46 190.7 357 40.1
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 4.0e-45 188.0 304 39.5
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 6.7e-45 187.2 649 27.3
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 1.2e-44 186.4 308 40.3
CAN.G979.7 Capsicum annuum HOM05D004112 ORTHO05D004739 1.5e-44 186.0 306 37.9
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.6e-41 176.0 729 26.5
Hma1.2p1_0079F.1_g041130 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 5.9e-41 174.1 373 35.9
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 5.0e-40 171.0 832 26.7
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 6.5e-40 170.6 829 26.5
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 2.5e-39 168.7 729 25.9
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 5.2e-37 161.0 732 26.6
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 4.4e-36 157.9 732 25.3
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 2.2e-35 155.6 786 26.2
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 3.7e-35 154.8 397 31.7
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 6.3e-35 154.1 626 27.5
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 3.1e-34 151.8 758 25.6
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.1e-34 151.8 177 51.4
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 1.3e-32 146.4 258 34.1
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 2.1e-30 139.0 747 25.3
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 3.6e-30 138.3 253 36.8
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 2.3e-29 135.6 154 47.4
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 8.3e-27 127.1 123 46.3
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 1.2e-25 123.2 175 42.9
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 1.3e-24 119.8 508 28.0
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 2.5e-23 115.5 117 52.1
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 5.2e-21 107.8 630 25.6
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 1.7e-19 102.8 181 41.4
Sed0006330 Sechium edule HOM05D004112 ORTHO05D004739 2.2e-19 102.4 436 26.4
BcaC05g25410 Brassica carinata HOM05D004112 ORTHO05D004739 2.0e-17 95.9 298 29.5
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 2.7e-17 95.5 115 46.1
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.2e-14 86.7 133 37.6
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 4.7e-14 84.7 81 49.4
Hma1.2p1_0900F.1_g234620 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 3.1e-13 82.0 115 46.1
Lj3P1060T39 Lonicera japonica HOM05D004112 ORTHO05D004739 2.0e-12 79.3 97 49.5
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 5.8e-12 77.8 244 27.0
Hma1.2p1_0900F.1_g234630 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 5.8e-12 77.8 61 55.7
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 4.9e-11 74.7 199 30.7
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 6.4e-11 74.3 197 31.0
HPP92_015941 Vanilla planifolia HOM05D004112 ORTHO05D004739 6.4e-11 74.3 88 45.5
HPP92_015914 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.1e-10 73.6 88 45.5
Lj2C1008T10 Lonicera japonica HOM05D004112 ORTHO05D004739 3.2e-10 72.0 257 30.0
PGR042G2157 Punica granatum HOM05D004112 ORTHO05D004739 4.1e-10 71.6 57 54.4
BolC5t29747H Brassica oleracea HOM05D004112 ORTHO05D027101 2.7e-09 68.9 442 24.4
BolC5t29741H Brassica oleracea HOM05D004112 ORTHO05D004739 3.5e-09 68.6 442 24.4
SHI17828 Sapria himalayana HOM05D004112 ORTHO05D004739 7.8e-09 67.4 77 40.3
BcaC05g25061 Brassica carinata HOM05D004112 ORTHO05D027101 1.1e-07 63.5 453 24.1
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 3.3e-07 62.0 679 21.9
BcaC05g25060 Brassica carinata HOM05D021208 ORTHO05D027101 2.1e-06 59.3 87 37.9


User provided reference genes

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