Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 0.0e+00 1170.6 584 100.0
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 4.8e-239 831.2 617 68.7
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 2.4e-235 818.9 617 67.9
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 1.7e-228 796.2 619 65.8
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.5e-219 765.8 619 62.7
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 7.1e-219 764.2 619 62.5
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 3.1e-214 748.8 620 61.9
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 5.3e-214 748.0 620 61.9
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 3.4e-213 745.3 620 61.6
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 2.9e-212 742.3 619 60.9
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 1.1e-206 723.8 632 59.7
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 9.1e-206 720.7 620 60.2
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 2.2e-204 716.1 619 59.6
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 1.8e-201 706.4 622 60.1
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 5.1e-201 704.9 619 58.5
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 1.7e-199 699.9 620 59.0
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 2.6e-197 692.6 624 57.5
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 2.2e-196 689.5 614 56.7
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 3.8e-196 688.7 617 56.1
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 3.9e-193 678.7 621 55.9
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 3.9e-193 678.7 618 57.9
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 2.6e-192 676.0 614 57.8
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 2.2e-191 672.9 622 56.4
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 2.8e-191 672.5 621 55.9
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 4.8e-191 671.8 622 55.0
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 2.0e-189 666.4 628 55.1
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 1.9e-187 659.8 625 55.8
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 1.5e-184 650.2 581 58.2
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 2.2e-183 646.4 613 53.8
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 8.3e-183 644.4 626 53.5
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 1.1e-182 644.0 621 53.5
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 1.8e-182 643.3 657 54.0
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 1.8e-182 643.3 625 53.4
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 1.6e-181 640.2 655 52.2
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 5.9e-181 638.3 592 54.4
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 1.0e-180 637.5 620 53.4
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 3.8e-180 635.6 629 53.4
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 5.0e-180 635.2 623 53.1
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 6.5e-180 634.8 621 52.2
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 8.5e-180 634.4 624 53.8
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 1.9e-179 633.3 625 53.9
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 1.2e-178 630.6 629 53.1
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 6.8e-177 624.8 610 55.2
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 4.4e-176 622.1 634 52.4
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 6.3e-175 618.2 621 52.2
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 1.4e-174 617.1 621 51.7
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 3.1e-174 615.9 623 51.7
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 3.1e-174 615.9 620 52.1
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 4.1e-174 615.5 621 52.3
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 7.0e-174 614.8 621 51.9
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 9.1e-174 614.4 600 53.2
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 1.6e-173 613.6 622 51.9
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 1.0e-172 610.9 626 51.3
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 1.3e-172 610.5 621 52.7
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 1.7e-172 610.1 619 52.2
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 1.7e-172 610.1 620 52.4
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 5.0e-172 608.6 621 52.2
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 5.0e-172 608.6 626 51.1
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 8.6e-172 607.8 622 51.4
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 1.5e-171 607.1 629 52.8
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 3.6e-170 602.4 629 52.5
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 3.6e-170 602.4 525 59.0
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 4.7e-170 602.1 628 51.3
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 4.7e-170 602.1 624 51.3
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 8.0e-170 601.3 629 51.0
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 8.0e-170 601.3 628 50.8
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 3.0e-169 599.4 621 50.7
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 4.0e-169 599.0 625 50.6
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 3.4e-168 595.9 632 51.4
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 5.7e-168 595.1 622 49.7
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 1.3e-167 594.0 625 49.9
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 2.2e-167 593.2 625 51.0
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 2.2e-167 593.2 626 51.3
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 2.8e-167 592.8 622 50.0
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 3.7e-167 592.4 622 50.0
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 8.3e-167 591.3 622 50.0
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 1.8e-166 590.1 622 49.8
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 2.4e-166 589.7 625 50.1
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 3.2e-166 589.3 620 50.8
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 7.0e-166 588.2 622 49.7
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 7.0e-166 588.2 626 50.0
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 2.0e-165 586.6 626 49.8
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 2.7e-165 586.3 638 49.1
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 5.9e-165 585.1 624 50.5
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 5.9e-165 585.1 612 51.8
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 5.9e-165 585.1 622 49.8
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 1.6e-162 577.0 621 49.4
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 1.6e-162 577.0 592 51.4
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 4.7e-162 575.5 634 47.6
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 5.2e-161 572.0 624 49.8
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 3.4e-160 569.3 684 46.2
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 9.8e-160 567.8 691 45.7
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 6.4e-159 565.1 514 56.2
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 4.1e-158 562.4 627 50.1
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 4.6e-157 558.9 622 48.1
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 5.0e-156 555.4 617 48.8
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 6.6e-156 555.1 620 49.2
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 4.3e-155 552.4 593 48.4
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 4.3e-147 525.8 529 51.6
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.9e-139 500.4 641 44.1
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.9e-139 500.4 641 44.1
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 3.6e-138 496.1 637 44.1
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 8.9e-137 491.5 626 43.9
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 5.4e-134 482.3 500 52.6
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 1.1e-131 474.6 592 45.8
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 2.4e-129 466.8 384 58.1
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 2.2e-127 460.3 623 42.4
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 9.3e-126 454.9 404 55.7
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 1.6e-122 444.1 649 39.3
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 8.7e-116 421.8 402 56.2
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 3.3e-115 419.9 627 38.4
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 1.7e-111 407.5 485 45.6
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 6.5e-111 405.6 405 53.8
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 1.1e-102 378.3 590 39.3
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 7.1e-102 375.6 474 42.4
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 1.5e-70 271.6 411 38.2
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 4.7e-69 266.5 431 39.4
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 2.0e-67 261.2 478 33.7
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 2.0e-67 261.2 269 55.8
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 1.1e-57 228.8 246 48.8
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 1.9e-54 218.0 389 38.0
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.0e-47 195.7 130 73.1
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 5.0e-47 193.4 164 60.4
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 2.3e-36 157.9 538 26.0
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 4.9e-34 150.2 107 61.7
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 2.4e-33 147.9 163 48.5
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 1.6e-29 135.2 190 44.7
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 4.7e-29 133.7 108 63.9
arahy.Tifrunner.gnm1.ann1.T7I6MJ Arachis hypogaea HOM05D005422 ORTHO05D006578 9.9e-27 125.9 215 35.3
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 1.2e-24 119.0 145 43.4
unitig_35.g30204 Utricularia gibba HOM05D005422 ORTHO05D006578 2.1e-21 108.2 88 59.1
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 9.3e-17 92.8 170 37.1
Lsat_1_v5_gn_7_52961 Lactuca sativa HOM05D001824 ORTHO05D006578 1.0e-15 89.4 67 62.7
Lsat_1_v5_gn_3_78701 Lactuca sativa HOM05D005422 ORTHO05D006578 8.7e-15 86.3 69 60.9
HPP92_024297 Vanilla planifolia HOM05D005422 ORTHO05D006578 7.3e-14 83.2 88 46.6
Lsat_1_v5_gn_6_18500 Lactuca sativa HOM05D001824 ORTHO05D006578 8.1e-13 79.7 67 58.2
arahy.Tifrunner.gnm1.ann1.IS07F8 Arachis hypogaea HOM05D005422 ORTHO05D006578 1.1e-12 79.3 88 43.2
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 3.4e-11 74.3 204 30.4
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 5.8e-11 73.6 81 50.6
Sabra08G0136500 Salix brachista HOM05D005422 ORTHO05D006578 3.8e-10 70.9 72 47.2
VMungo1215G3139 Vigna mungo HOM05D003635 ORTHO05D004283 1.9e-09 68.6 54 57.4
SHI54583 Sapria himalayana HOM05D005422 ORTHO05D006578 2.1e-08 65.1 52 57.7
Lsat_1_v5_gn_4_129760 Lactuca sativa HOM05D001733 ORTHO05D001882 6.0e-08 63.5 45 71.1
MBI10_g35396_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 7.9e-08 63.2 43 67.4
Lsat_1_v5_gn_4_120120 Lactuca sativa HOM05D001824 ORTHO05D006578 3.9e-07 60.8 57 50.9
BcaC03g14863 Brassica carinata HOM05D000026 ORTHO05D000094 1.5e-06 58.9 56 53.6
AL1G40980 Arabidopsis lyrata HOM05D002438 ORTHO05D002617 9.6e-06 56.2 40 57.5


User provided reference genes

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