Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold46G17355 Striga asiatica HOM05D002782 ORTHO05D000233 6.2e-171 604.0 293 100.0
SGA_v2.0_scaffold145G36005 Striga asiatica HOM05D002782 ORTHO05D004868 3.3e-39 166.4 319 37.6
Cfa012290 Carpinus fangiana HOM05D002782 ORTHO05D004868 6.5e-27 125.6 227 37.4
MSTRG.8928 Avicennia marina HOM05D002782 ORTHO05D004868 3.3e-23 113.2 81 66.7
SGA_v2.0_scaffold294G47483 Striga asiatica HOM05D022778 ORTHO05D010104 1.4e-21 107.8 113 50.4
SGA_v2.0_scaffold18G08286 Striga asiatica HOM05D022778 ORTHO05D010104 5.3e-21 105.9 113 49.6
MSTRG.194 Avicennia marina HOM05D002782 ORTHO05D004868 6.9e-21 105.5 81 61.7
Migut.F01474 Erythranthe guttata HOM05D002782 ORTHO05D004868 9.0e-21 105.1 86 65.1
GSVIVG01032759001 Vitis vinifera HOM05D002782 ORTHO05D004868 1.5e-20 104.4 86 61.6
CSS0020383 Camellia sinensis var. sinensis HOM05D002782 ORTHO05D004868 2.0e-20 104.0 81 64.2
CSS0026282 Camellia sinensis var. sinensis HOM05D002782 ORTHO05D004868 2.0e-20 104.0 81 64.2
SalBow5G4324 Salvia bowleyana HOM05D002782 ORTHO05D004868 2.6e-20 103.6 82 63.4
Dinv14563 Davidia involucrata HOM05D002782 ORTHO05D004868 4.5e-20 102.8 85 63.5
vmacro10005 Vaccinium macrocarpon HOM05D002782 ORTHO05D004868 4.5e-20 102.8 84 61.9
Lj1A960T72 Lonicera japonica HOM05D002782 ORTHO05D004868 5.9e-20 102.4 85 62.4
Actinidia33910 Actinidia chinensis HOM05D002782 ORTHO05D004868 1.0e-19 101.7 81 63.0
Haze_08439 Corylus avellana HOM05D002782 ORTHO05D004868 1.3e-19 101.3 86 59.3
DCAR_011840 Daucus carota HOM05D002782 ORTHO05D004868 1.3e-19 101.3 86 58.1
Duzib205G0719 Durio zibethinus HOM05D002782 ORTHO05D004868 2.2e-19 100.5 86 59.3
Oeu023922.2 Olea europaea HOM05D002782 ORTHO05D004868 2.2e-19 100.5 78 64.1
Peaxi162Scf00045g02532 Petunia axillaris HOM05D002782 ORTHO05D004868 2.9e-19 100.1 85 58.8
Sc11g0005260 Simmondsia chinensis HOM05D002782 ORTHO05D004868 2.9e-19 100.1 88 55.7
Ah.10g036270 Amaranthus hybridus HOM05D002782 ORTHO05D004868 5.0e-19 99.4 85 57.6
CSS0019767 Camellia sinensis var. sinensis HOM05D002782 ORTHO05D004868 6.5e-19 99.0 82 62.2
Dinv37031 Davidia involucrata HOM05D002782 ORTHO05D004868 6.5e-19 99.0 81 63.0
Nitab4.5_0001106g0100 Nicotiana tabacum HOM05D002782 ORTHO05D004868 6.5e-19 99.0 85 60.0
Sc10g0002590 Simmondsia chinensis HOM05D002782 ORTHO05D004868 8.5e-19 98.6 88 55.7
Thecc.03G318500 Theobroma cacao HOM05D002782 ORTHO05D004868 8.5e-19 98.6 85 60.0
Lj8C63G18 Lonicera japonica HOM05D002782 ORTHO05D004868 1.4e-18 97.8 81 59.3
Rhsim03G0146500 Rhododendron simsii HOM05D002782 ORTHO05D004868 1.9e-18 97.4 83 59.0
Rhsim09G0180000 Rhododendron simsii HOM05D002782 ORTHO05D004868 1.9e-18 97.4 85 61.2
TAR633G0972 Trochodendron aralioides HOM05D002782 ORTHO05D004868 1.9e-18 97.4 85 55.3
vmacro17692 Vaccinium macrocarpon HOM05D002782 ORTHO05D004868 1.9e-18 97.4 81 59.3
EL10Ac2g04886 Beta vulgaris HOM05D002782 ORTHO05D004868 3.2e-18 96.7 85 57.6
CSS0011991 Camellia sinensis var. sinensis HOM05D002782 ORTHO05D004868 3.2e-18 96.7 82 61.0
Duzib068G1320 Durio zibethinus HOM05D002782 ORTHO05D004868 3.2e-18 96.7 86 58.1
Nn1g08490 Nelumbo nucifera HOM05D002782 ORTHO05D004868 3.2e-18 96.7 88 55.7
TAR623G0374 Trochodendron aralioides HOM05D002782 ORTHO05D004868 3.2e-18 96.7 86 58.1
Solyc05g052490.3 Solanum lycopersicum HOM05D002782 ORTHO05D004868 5.5e-18 95.9 85 55.3
Sopen05g031020 Solanum pennellii HOM05D002782 ORTHO05D004868 5.5e-18 95.9 85 55.3
COL.COLO4_10372 Corchorus olitorius HOM05D002782 ORTHO05D004868 7.2e-18 95.5 86 57.0
Hund13890 Selenicereus undatus HOM05D002782 ORTHO05D004868 9.4e-18 95.1 85 57.6
Hund15888 Selenicereus undatus HOM05D002782 ORTHO05D004868 9.4e-18 95.1 88 56.8
Atru.chr8.2635 Acer truncatum HOM05D002782 ORTHO05D004868 1.2e-17 94.7 86 60.5
Gohir.D12G204800 Gossypium hirsutum HOM05D002782 ORTHO05D004868 1.2e-17 94.7 85 58.8
Gorai.008G219700 Gossypium raimondii HOM05D002782 ORTHO05D004868 1.2e-17 94.7 85 58.8
Eucgr.D02556 Eucalyptus grandis HOM05D002782 ORTHO05D004868 1.6e-17 94.4 86 55.8
QL12p003810 Quercus lobata HOM05D002782 ORTHO05D004868 2.1e-17 94.0 86 57.0
Ciclev10011132m.g Citrus clementina HOM05D002782 ORTHO05D004868 2.7e-17 93.6 81 56.8
Gohir.A12G202100 Gossypium hirsutum HOM05D002782 ORTHO05D004868 2.7e-17 93.6 85 57.6
Rhsim03G0146400 Rhododendron simsii HOM05D002782 ORTHO05D004868 2.7e-17 93.6 83 57.8
SalBow3G1879 Salvia bowleyana HOM05D002782 ORTHO05D004868 2.7e-17 93.6 60 73.3
SalBow3G3151 Salvia bowleyana HOM05D002782 ORTHO05D004868 2.7e-17 93.6 60 73.3
DCAR_024803 Daucus carota HOM05D002782 ORTHO05D004868 4.6e-17 92.8 81 56.8
PGSC0003DMG402027172 Solanum tuberosum HOM05D002782 ORTHO05D004868 4.6e-17 92.8 85 54.1
Cc02_g06070 Coffea canephora HOM05D002782 ORTHO05D004868 6.1e-17 92.4 82 56.1
RcHm_v2.0_Chr6g0304431 Rosa chinensis HOM05D002782 ORTHO05D004868 7.9e-17 92.0 86 54.7
CiPaw.12G054100 Carya illinoinensis HOM05D002782 ORTHO05D004868 1.0e-16 91.7 87 56.3
Hma1.2p1_0892F.1_g233200 Hydrangea macrophylla HOM05D002782 ORTHO05D004868 1.0e-16 91.7 85 54.1
MD08G1000700 Malus domestica HOM05D002782 ORTHO05D004868 1.0e-16 91.7 85 54.1
Ah.16g103860 Amaranthus hybridus HOM05D002782 ORTHO05D004868 1.8e-16 90.9 85 55.3
Prupe.1G352700 Prunus persica HOM05D002782 ORTHO05D004868 1.8e-16 90.9 86 52.3
Actinidia00661 Actinidia chinensis HOM05D002782 ORTHO05D004868 2.3e-16 90.5 68 66.2
Aqoxy2G00804 Aquilegia oxysepala HOM05D002782 ORTHO05D004868 2.3e-16 90.5 86 53.5
CAN.G1268.10 Capsicum annuum HOM05D002782 ORTHO05D004868 2.3e-16 90.5 85 54.1
AUR62012294 Chenopodium quinoa HOM05D002782 ORTHO05D004868 2.3e-16 90.5 86 55.8
Oeu043176.1 Olea europaea HOM05D002782 ORTHO05D004868 3.0e-16 90.1 82 58.5
Aa31LG6G1880 Aethionema arabicum HOM05D002782 ORTHO05D004868 3.9e-16 89.7 62 64.5
AUR62022933 Chenopodium quinoa HOM05D002782 ORTHO05D004868 3.9e-16 89.7 85 52.9
Nn5g27845 Nelumbo nucifera HOM05D002782 ORTHO05D004868 3.9e-16 89.7 88 54.5
FAN15G3251 Fragaria x ananassa HOM05D002782 ORTHO05D004868 5.1e-16 89.4 85 55.3
FvH4_2g37270 Fragaria vesca HOM05D002782 ORTHO05D004868 6.7e-16 89.0 85 55.3
PSO339G3053 Papaver somniferum HOM05D002782 ORTHO05D004868 1.1e-15 88.2 87 57.5
PSO801G0326 Papaver somniferum HOM05D002782 ORTHO05D004868 1.1e-15 88.2 87 57.5
SGA_v2.0_scaffold277G46711 Striga asiatica HOM05D012899 ORTHO05D000233 1.1e-15 88.2 103 43.7
Potri.004G236900 Populus trichocarpa HOM05D002782 ORTHO05D004868 4.3e-15 86.3 81 56.8
SGA_v2.0_scaffold214G42295 Striga asiatica HOM05D012899 ORTHO05D013633 4.3e-15 86.3 103 42.7
AT4G19180 Arabidopsis thaliana HOM05D002782 ORTHO05D004868 5.7e-15 85.9 96 47.9
Cpa.g.sc90.28 Carica papaya HOM05D002782 ORTHO05D004868 5.7e-15 85.9 88 50.0
AL7G34910 Arabidopsis lyrata HOM05D002782 ORTHO05D004868 7.4e-15 85.5 61 62.3
Carub.0007s2197 Capsella rubella HOM05D002782 ORTHO05D004868 7.4e-15 85.5 73 57.5
Thhalv10024508m.g Eutrema salsugineum HOM05D002782 ORTHO05D004868 7.4e-15 85.5 61 62.3
Nitab4.5_0000058g0140 Nicotiana tabacum HOM05D002782 ORTHO05D004868 9.7e-15 85.1 89 50.6
PSO349G0201 Papaver somniferum HOM05D002782 ORTHO05D004868 9.7e-15 85.1 85 54.1
Glyma.16G077100 Glycine max HOM05D002782 ORTHO05D004868 1.3e-14 84.7 92 46.7
Sp7g17880 Schrenkiella parvula HOM05D002782 ORTHO05D004868 1.3e-14 84.7 61 62.3
THA.LOC104811084 Tarenaya hassleriana HOM05D002782 ORTHO05D004868 1.3e-14 84.7 304 25.3
PGR031G0598 Punica granatum HOM05D002782 ORTHO05D004868 1.7e-14 84.3 86 50.0
unitig_0.g250 Utricularia gibba HOM05D002782 ORTHO05D004868 1.7e-14 84.3 86 50.0
FAN20G2848 Fragaria x ananassa HOM05D002782 ORTHO05D004868 2.2e-14 84.0 81 53.1
TWI32G0517 Tripterygium wilfordii HOM05D002782 ORTHO05D004868 2.2e-14 84.0 86 53.5
CARHR226050 Cardamine hirsuta HOM05D002782 ORTHO05D004868 2.8e-14 83.6 60 60.0
MBI03_g28295_MAGBIO Magnolia biondii HOM05D002782 ORTHO05D004868 3.7e-14 83.2 86 53.5
PSO765G0081 Papaver somniferum HOM05D002782 ORTHO05D004868 6.3e-14 82.4 85 52.9
Sabra01G0180900 Salix brachista HOM05D002782 ORTHO05D004868 6.3e-14 82.4 80 53.8
Migut.F00640 Erythranthe guttata HOM05D002782 ORTHO05D004868 1.1e-13 81.6 61 63.9
Glyma.16G110400 Glycine max HOM05D002782 ORTHO05D004868 1.1e-13 81.6 86 50.0
Manes.14G167800 Manihot esculenta HOM05D002782 ORTHO05D004868 1.1e-13 81.6 84 52.4
A01p11140 Brassica napus HOM05D002782 ORTHO05D004868 2.4e-13 80.5 71 56.3
BraA01t01060Z Brassica rapa HOM05D002782 ORTHO05D004868 2.4e-13 80.5 71 56.3
CDE04G0474 Ceratophyllum demersum HOM05D002782 ORTHO05D004868 2.4e-13 80.5 69 59.4
Os10g0350500 Oryza sativa ssp. japonica HOM05D002782 ORTHO05D004868 2.4e-13 80.5 94 53.2
Manes.06G009400 Manihot esculenta HOM05D002782 ORTHO05D004868 4.1e-13 79.7 84 52.4
ECA233G2803 Erigeron canadensis HOM05D002782 ORTHO05D004868 5.3e-13 79.3 73 52.1
arahy.Tifrunner.gnm1.ann1.UWV4C8 Arachis hypogaea HOM05D002782 ORTHO05D004868 6.9e-13 79.0 80 51.2
BcaNung03074 Brassica carinata HOM05D002782 ORTHO05D004868 6.9e-13 79.0 64 59.4
C07p50290 Brassica napus HOM05D002782 ORTHO05D004868 6.9e-13 79.0 64 59.4
BolC7t45531H Brassica oleracea HOM05D002782 ORTHO05D004868 6.9e-13 79.0 64 59.4
ClCG07G011070 Citrullus lanatus HOM05D002782 ORTHO05D004868 6.9e-13 79.0 69 53.6
Lalb_Chr05g0215051 Lupinus albus HOM05D002782 ORTHO05D004868 6.9e-13 79.0 80 51.2
MBI06_g01058_MAGBIO Magnolia biondii HOM05D002782 ORTHO05D004868 9.1e-13 78.6 83 53.0
Sed0021806 Sechium edule HOM05D002782 ORTHO05D004868 1.2e-12 78.2 69 53.6
SEGI_18122 Sequoiadendron giganteum HOM05D002782 ORTHO05D004868 1.5e-12 77.8 82 46.3
ECA232G3685 Erigeron canadensis HOM05D002782 ORTHO05D004868 2.0e-12 77.4 80 53.8
Sed0022148 Sechium edule HOM05D002782 ORTHO05D004868 2.0e-12 77.4 69 53.6
MELO3C016223.2 Cucumis melo HOM05D002782 ORTHO05D004868 3.4e-12 76.6 68 52.9
CsaV3_4G007170 Cucumis sativus L. HOM05D002782 ORTHO05D004868 3.4e-12 76.6 69 55.1
Lalb_Chr09g0324931 Lupinus albus HOM05D002782 ORTHO05D004868 5.9e-12 75.9 80 47.5
VMungo0251G0085 Vigna mungo HOM05D002782 ORTHO05D004868 5.9e-12 75.9 84 46.4
Lsat_1_v5_gn_9_60901 Lactuca sativa HOM05D002782 ORTHO05D004868 7.7e-12 75.5 85 49.4
unitig_0.g2177 Utricularia gibba HOM05D002782 ORTHO05D004868 1.0e-11 75.1 85 51.8
FAN27G1804 Fragaria x ananassa HOM05D002782 ORTHO05D004868 1.3e-11 74.7 85 49.4
Phvul.003G279000 Phaseolus vulgaris HOM05D002782 ORTHO05D004868 1.3e-11 74.7 84 45.2
HanXRQChr15g0496001 Helianthus annuus HOM05D002782 ORTHO05D004868 1.7e-11 74.3 60 61.7
HanXRQChr08g0222001 Helianthus annuus HOM05D002782 ORTHO05D004868 2.9e-11 73.6 73 50.7
CDE04G2957 Ceratophyllum demersum HOM05D002782 ORTHO05D004868 5.0e-11 72.8 61 59.0
CDE06G2696 Ceratophyllum demersum HOM05D002782 ORTHO05D004868 5.0e-11 72.8 60 58.3
Zm00001eb289880 Zea mays HOM05D002782 ORTHO05D004868 5.0e-11 72.8 86 50.0
HPP92_016789 Vanilla planifolia HOM05D002782 ORTHO05D004868 1.4e-10 71.2 83 54.2
Lalb_Chr05g0229191 Lupinus albus HOM05D002782 ORTHO05D004868 1.9e-10 70.9 82 46.3
arahy.Tifrunner.gnm1.ann1.DH90GK Arachis hypogaea HOM05D002782 ORTHO05D004868 4.2e-10 69.7 84 46.4
arahy.Tifrunner.gnm1.ann1.NHUB83 Arachis hypogaea HOM05D002782 ORTHO05D004868 4.2e-10 69.7 84 46.4
BcaC09g51432 Brassica carinata HOM05D002782 ORTHO05D004868 7.2e-10 68.9 71 52.1
C01p13180 Brassica napus HOM05D002782 ORTHO05D004868 7.2e-10 68.9 71 52.1
Glyma.11G089700 Glycine max HOM05D002782 ORTHO05D004868 1.2e-09 68.2 80 50.0
Lj2g0021450 Lotus japonicus HOM05D002782 ORTHO05D004868 1.2e-09 68.2 84 46.4
ATR0087G006 Amborella trichopoda HOM05D002782 ORTHO05D004868 1.6e-09 67.8 74 51.4
Lj4g0000454 Lotus japonicus HOM05D002782 ORTHO05D004868 2.1e-09 67.4 82 47.6
Ca_22444_v3 Cicer arietinum L. HOM05D002782 ORTHO05D004868 2.7e-09 67.0 81 46.9
Ca_22451_v3 Cicer arietinum L. HOM05D002782 ORTHO05D004868 2.7e-09 67.0 81 46.9
Ca_25033_v3 Cicer arietinum L. HOM05D002782 ORTHO05D004868 3.6e-09 66.6 61 50.8
Medtr5g025280 Medicago truncatula HOM05D002782 ORTHO05D004868 4.7e-09 66.2 82 42.7
Psat4g106920 Pisum sativum HOM05D002782 ORTHO05D004868 6.1e-09 65.9 93 41.9
SGA_v2.0_scaffold61G21245 Striga asiatica HOM05D000036 ORTHO05D010104 7.9e-09 65.5 116 33.6
Phvul.002G120700 Phaseolus vulgaris HOM05D002782 ORTHO05D004868 2.3e-08 63.9 65 50.8
VMungo1215G2342 Vigna mungo HOM05D002782 ORTHO05D004868 2.3e-08 63.9 62 53.2
Psat2g146360 Pisum sativum HOM05D002782 ORTHO05D004868 5.1e-08 62.8 81 42.0
SEGI_28713 Sequoiadendron giganteum HOM05D002782 ORTHO05D004868 5.1e-08 62.8 74 43.2
SEGI_34319 Sequoiadendron giganteum HOM05D002782 ORTHO05D004868 5.1e-08 62.8 74 43.2
VMungo0331G1439 Vigna mungo HOM05D002782 ORTHO05D004868 5.1e-08 62.8 40 65.0
Glyma.01G154700 Glycine max HOM05D002782 ORTHO05D004868 8.8e-08 62.0 80 46.2
SMO347G0180 Selaginella moellendorffii HOM05D002782 ORTHO05D004868 8.8e-08 62.0 61 47.5
TPR.G14274 Trifolium pratense HOM05D002782 ORTHO05D004868 1.1e-07 61.6 94 41.5
Lsat_1_v5_gn_8_12920 Lactuca sativa HOM05D002782 ORTHO05D004868 4.4e-07 59.7 65 53.8
SGA_v2.0_scaffold203G41561 Striga asiatica HOM05D022778 ORTHO05D000233 4.4e-07 59.7 113 32.7
Psat5g276440 Pisum sativum HOM05D007793 ORTHO05D000636 3.7e-06 56.6 108 35.2
Medtr8g072360 Medicago truncatula HOM05D002782 ORTHO05D004868 6.3e-06 55.8 94 35.1
Pp3c21_9650 Physcomitrium patens HOM05D002782 ORTHO05D004868 6.3e-06 55.8 64 45.3
Pp3c21_9651 Physcomitrium patens HOM05D002782 ORTHO05D004868 6.3e-06 55.8 64 45.3


User provided reference genes

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