Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold46G17354 Striga asiatica HOM05D002782 ORTHO05D004868 5.0e-72 274.2 131 100.0
SGA_v2.0_scaffold145G36005 Striga asiatica HOM05D002782 ORTHO05D004868 2.3e-24 115.9 62 88.7
ClCG07G011070 Citrullus lanatus HOM05D002782 ORTHO05D004868 1.2e-20 103.6 62 75.8
Migut.F01474 Erythranthe guttata HOM05D002782 ORTHO05D004868 2.0e-20 102.8 62 77.4
Sed0021806 Sechium edule HOM05D002782 ORTHO05D004868 3.4e-20 102.1 62 77.4
MELO3C016223.2 Cucumis melo HOM05D002782 ORTHO05D004868 4.5e-20 101.7 62 74.2
CsaV3_4G007170 Cucumis sativus L. HOM05D002782 ORTHO05D004868 4.5e-20 101.7 62 74.2
unitig_0.g2177 Utricularia gibba HOM05D002782 ORTHO05D004868 1.3e-19 100.1 113 47.8
Lj8C63G18 Lonicera japonica HOM05D002782 ORTHO05D004868 4.9e-19 98.2 63 69.8
Eucgr.D02556 Eucalyptus grandis HOM05D002782 ORTHO05D004868 6.5e-19 97.8 63 69.8
Nn5g27845 Nelumbo nucifera HOM05D002782 ORTHO05D004868 8.4e-19 97.4 63 68.3
Prupe.1G352700 Prunus persica HOM05D002782 ORTHO05D004868 8.4e-19 97.4 63 69.8
CiPaw.12G054100 Carya illinoinensis HOM05D002782 ORTHO05D004868 1.1e-18 97.1 63 66.7
Haze_08439 Corylus avellana HOM05D002782 ORTHO05D004868 1.1e-18 97.1 64 73.4
MSTRG.194 Avicennia marina HOM05D002782 ORTHO05D004868 1.4e-18 96.7 63 68.3
Cfa012290 Carpinus fangiana HOM05D002782 ORTHO05D004868 1.4e-18 96.7 64 73.4
unitig_0.g250 Utricularia gibba HOM05D002782 ORTHO05D004868 1.4e-18 96.7 63 69.8
DCAR_024803 Daucus carota HOM05D002782 ORTHO05D004868 1.9e-18 96.3 63 69.8
TAR633G0972 Trochodendron aralioides HOM05D002782 ORTHO05D004868 1.9e-18 96.3 63 68.3
Peaxi162Scf00045g02532 Petunia axillaris HOM05D002782 ORTHO05D004868 3.2e-18 95.5 62 71.0
Sed0022148 Sechium edule HOM05D002782 ORTHO05D004868 3.2e-18 95.5 62 71.0
MSTRG.8928 Avicennia marina HOM05D002782 ORTHO05D004868 4.2e-18 95.1 63 68.3
MD08G1000700 Malus domestica HOM05D002782 ORTHO05D004868 4.2e-18 95.1 63 66.7
SalBow5G4324 Salvia bowleyana HOM05D002782 ORTHO05D004868 4.2e-18 95.1 62 69.4
Nitab4.5_0003391g0050 Nicotiana tabacum HOM05D002782 ORTHO05D004868 7.1e-18 94.4 62 72.6
Dinv14563 Davidia involucrata HOM05D002782 ORTHO05D004868 9.3e-18 94.0 63 66.7
PSO801G0326 Papaver somniferum HOM05D002782 ORTHO05D004868 9.3e-18 94.0 63 65.1
RcHm_v2.0_Chr6g0304431 Rosa chinensis HOM05D002782 ORTHO05D004868 9.3e-18 94.0 62 67.7
Cc02_g06070 Coffea canephora HOM05D002782 ORTHO05D004868 1.2e-17 93.6 63 66.7
COL.COLO4_10372 Corchorus olitorius HOM05D002782 ORTHO05D004868 1.2e-17 93.6 75 60.0
ECA232G3685 Erigeron canadensis HOM05D002782 ORTHO05D004868 1.2e-17 93.6 63 66.7
Cpa.g.sc90.28 Carica papaya HOM05D002782 ORTHO05D004868 1.6e-17 93.2 63 68.3
Duzib205G0719 Durio zibethinus HOM05D002782 ORTHO05D004868 1.6e-17 93.2 63 68.3
HanXRQChr08g0222001 Helianthus annuus HOM05D002782 ORTHO05D004868 1.6e-17 93.2 63 66.7
Nn1g08490 Nelumbo nucifera HOM05D002782 ORTHO05D004868 1.6e-17 93.2 63 66.7
Hund13890 Selenicereus undatus HOM05D002782 ORTHO05D004868 1.6e-17 93.2 63 66.7
Duzib068G1320 Durio zibethinus HOM05D002782 ORTHO05D004868 2.1e-17 92.8 75 61.3
FvH4_2g37270 Fragaria vesca HOM05D002782 ORTHO05D004868 2.1e-17 92.8 62 67.7
FAN15G3251 Fragaria x ananassa HOM05D002782 ORTHO05D004868 2.1e-17 92.8 62 67.7
FAN20G2848 Fragaria x ananassa HOM05D002782 ORTHO05D004868 2.1e-17 92.8 62 67.7
FAN27G1804 Fragaria x ananassa HOM05D002782 ORTHO05D004868 2.1e-17 92.8 62 67.7
Lsat_1_v5_gn_8_12920 Lactuca sativa HOM05D002782 ORTHO05D004868 2.1e-17 92.8 63 68.3
Oeu043176.1 Olea europaea HOM05D002782 ORTHO05D004868 2.1e-17 92.8 63 68.3
PSO339G3053 Papaver somniferum HOM05D002782 ORTHO05D004868 2.1e-17 92.8 63 63.5
Hma1.2p1_0892F.1_g233200 Hydrangea macrophylla HOM05D002782 ORTHO05D004868 2.7e-17 92.4 63 63.5
Lj1A960T72 Lonicera japonica HOM05D002782 ORTHO05D004868 2.7e-17 92.4 63 66.7
PGR031G0598 Punica granatum HOM05D002782 ORTHO05D004868 2.7e-17 92.4 63 66.7
TAR623G0374 Trochodendron aralioides HOM05D002782 ORTHO05D004868 2.7e-17 92.4 63 65.1
Nitab4.5_0000789g0070 Nicotiana tabacum HOM05D002782 ORTHO05D004868 3.5e-17 92.0 62 71.0
Potri.004G236900 Populus trichocarpa HOM05D002782 ORTHO05D004868 3.5e-17 92.0 75 57.3
THA.LOC104811084 Tarenaya hassleriana HOM05D002782 ORTHO05D004868 3.5e-17 92.0 63 63.5
vmacro10005 Vaccinium macrocarpon HOM05D002782 ORTHO05D004868 3.5e-17 92.0 63 65.1
SalBow3G1879 Salvia bowleyana HOM05D002782 ORTHO05D004868 4.6e-17 91.7 62 67.7
SalBow3G3151 Salvia bowleyana HOM05D002782 ORTHO05D004868 4.6e-17 91.7 62 67.7
EL10Ac2g04886 Beta vulgaris HOM05D002782 ORTHO05D004868 6.0e-17 91.3 63 65.1
PSO349G0201 Papaver somniferum HOM05D002782 ORTHO05D004868 6.0e-17 91.3 75 58.7
Rhsim03G0146400 Rhododendron simsii HOM05D002782 ORTHO05D004868 6.0e-17 91.3 63 65.1
Rhsim03G0146500 Rhododendron simsii HOM05D002782 ORTHO05D004868 6.0e-17 91.3 63 65.1
Sabra01G0180900 Salix brachista HOM05D002782 ORTHO05D004868 6.0e-17 91.3 63 61.9
Actinidia00661 Actinidia chinensis HOM05D002782 ORTHO05D004868 7.9e-17 90.9 62 64.5
Dinv37031 Davidia involucrata HOM05D002782 ORTHO05D004868 7.9e-17 90.9 63 65.1
Migut.F00640 Erythranthe guttata HOM05D002782 ORTHO05D004868 7.9e-17 90.9 63 68.3
Lsat_1_v5_gn_9_60901 Lactuca sativa HOM05D002782 ORTHO05D004868 7.9e-17 90.9 62 67.7
AUR62012294 Chenopodium quinoa HOM05D002782 ORTHO05D004868 1.0e-16 90.5 63 63.5
AUR62022933 Chenopodium quinoa HOM05D002782 ORTHO05D004868 1.0e-16 90.5 63 63.5
Ca_25033_v3 Cicer arietinum L. HOM05D002782 ORTHO05D004868 1.0e-16 90.5 75 57.3
Gohir.D12G204800 Gossypium hirsutum HOM05D002782 ORTHO05D004868 1.0e-16 90.5 75 57.3
Gorai.008G219700 Gossypium raimondii HOM05D002782 ORTHO05D004868 1.0e-16 90.5 75 57.3
Lalb_Chr05g0215051 Lupinus albus HOM05D002782 ORTHO05D004868 1.0e-16 90.5 63 61.9
Manes.14G167800 Manihot esculenta HOM05D002782 ORTHO05D004868 1.0e-16 90.5 75 57.3
Phvul.002G120700 Phaseolus vulgaris HOM05D002782 ORTHO05D004868 1.0e-16 90.5 63 63.5
Rhsim09G0180000 Rhododendron simsii HOM05D002782 ORTHO05D004868 1.0e-16 90.5 62 66.1
Thecc.03G318500 Theobroma cacao HOM05D002782 ORTHO05D004868 1.0e-16 90.5 63 65.1
vmacro06951 Vaccinium macrocarpon HOM05D002782 ORTHO05D004868 1.0e-16 90.5 63 65.1
vmacro17692 Vaccinium macrocarpon HOM05D002782 ORTHO05D004868 1.0e-16 90.5 63 65.1
arahy.Tifrunner.gnm1.ann1.DH90GK Arachis hypogaea HOM05D002782 ORTHO05D004868 1.3e-16 90.1 62 62.9
arahy.Tifrunner.gnm1.ann1.NHUB83 Arachis hypogaea HOM05D002782 ORTHO05D004868 1.3e-16 90.1 62 62.9
PSO765G0081 Papaver somniferum HOM05D002782 ORTHO05D004868 1.3e-16 90.1 63 63.5
Sc11g0005260 Simmondsia chinensis HOM05D002782 ORTHO05D004868 1.3e-16 90.1 63 69.8
Ah.16g103860 Amaranthus hybridus HOM05D002782 ORTHO05D004868 1.8e-16 89.7 63 63.5
CAN.G1268.10 Capsicum annuum HOM05D002782 ORTHO05D004868 1.8e-16 89.7 62 67.7
Ca_22444_v3 Cicer arietinum L. HOM05D002782 ORTHO05D004868 1.8e-16 89.7 63 63.5
Ca_22451_v3 Cicer arietinum L. HOM05D002782 ORTHO05D004868 1.8e-16 89.7 63 63.5
DCAR_011840 Daucus carota HOM05D002782 ORTHO05D004868 1.8e-16 89.7 63 61.9
ECA233G2803 Erigeron canadensis HOM05D002782 ORTHO05D004868 1.8e-16 89.7 63 61.9
MBI06_g01058_MAGBIO Magnolia biondii HOM05D002782 ORTHO05D004868 1.8e-16 89.7 64 64.1
Nitab4.5_0001106g0100 Nicotiana tabacum HOM05D002782 ORTHO05D004868 1.8e-16 89.7 62 64.5
Psat4g106920 Pisum sativum HOM05D002782 ORTHO05D004868 1.8e-16 89.7 63 63.5
HPP92_016835 Vanilla planifolia HOM05D002782 ORTHO05D004868 1.8e-16 89.7 63 65.1
CSS0011991 Camellia sinensis var. sinensis HOM05D002782 ORTHO05D004868 2.3e-16 89.4 63 65.1
CSS0019767 Camellia sinensis var. sinensis HOM05D002782 ORTHO05D004868 2.3e-16 89.4 63 65.1
Gohir.A12G202100 Gossypium hirsutum HOM05D002782 ORTHO05D004868 2.3e-16 89.4 75 57.3
HanXRQChr15g0496001 Helianthus annuus HOM05D002782 ORTHO05D004868 2.3e-16 89.4 63 61.9
Hund15888 Selenicereus undatus HOM05D002782 ORTHO05D004868 2.3e-16 89.4 62 66.1
Solyc05g052490.3 Solanum lycopersicum HOM05D002782 ORTHO05D004868 2.3e-16 89.4 62 66.1
Sopen05g031020 Solanum pennellii HOM05D002782 ORTHO05D004868 2.3e-16 89.4 62 66.1
PGSC0003DMG402027172 Solanum tuberosum HOM05D002782 ORTHO05D004868 2.3e-16 89.4 62 66.1
VMungo0251G0085 Vigna mungo HOM05D002782 ORTHO05D004868 2.3e-16 89.4 63 63.5
Ah.10g036270 Amaranthus hybridus HOM05D002782 ORTHO05D004868 3.0e-16 89.0 63 65.1
Ciclev10011132m.g Citrus clementina HOM05D002782 ORTHO05D004868 3.0e-16 89.0 64 64.1
Glyma.01G154700 Glycine max HOM05D002782 ORTHO05D004868 3.0e-16 89.0 62 62.9
TWI32G0517 Tripterygium wilfordii HOM05D002782 ORTHO05D004868 3.0e-16 89.0 63 68.3
GSVIVG01032759001 Vitis vinifera HOM05D002782 ORTHO05D004868 3.0e-16 89.0 63 66.7
AT4G19180 Arabidopsis thaliana HOM05D002782 ORTHO05D004868 3.9e-16 88.6 63 63.5
Glyma.11G089700 Glycine max HOM05D002782 ORTHO05D004868 3.9e-16 88.6 63 60.3
Sc10g0002590 Simmondsia chinensis HOM05D002782 ORTHO05D004868 3.9e-16 88.6 63 65.1
TPR.G14274 Trifolium pratense HOM05D002782 ORTHO05D004868 3.9e-16 88.6 63 61.9
Carub.0007s2197 Capsella rubella HOM05D002782 ORTHO05D004868 5.1e-16 88.2 63 63.5
Oeu023922.2 Olea europaea HOM05D002782 ORTHO05D004868 5.1e-16 88.2 63 65.1
Phvul.003G279000 Phaseolus vulgaris HOM05D002782 ORTHO05D004868 5.1e-16 88.2 63 61.9
TPR.G5250 Trifolium pratense HOM05D002782 ORTHO05D004868 5.1e-16 88.2 75 53.3
Lj2g0021450 Lotus japonicus HOM05D002782 ORTHO05D004868 6.7e-16 87.8 63 60.3
MBI03_g28295_MAGBIO Magnolia biondii HOM05D002782 ORTHO05D004868 6.7e-16 87.8 63 58.7
Psat2g146360 Pisum sativum HOM05D002782 ORTHO05D004868 6.7e-16 87.8 75 53.3
Aa31LG6G1880 Aethionema arabicum HOM05D002782 ORTHO05D004868 8.7e-16 87.4 63 63.5
CSS0026282 Camellia sinensis var. sinensis HOM05D002782 ORTHO05D004868 8.7e-16 87.4 63 63.5
Manes.06G009400 Manihot esculenta HOM05D002782 ORTHO05D004868 8.7e-16 87.4 75 57.3
VMungo1215G2342 Vigna mungo HOM05D002782 ORTHO05D004868 8.7e-16 87.4 63 60.3
Atru.chr8.2635 Acer truncatum HOM05D002782 ORTHO05D004868 1.1e-15 87.0 64 62.5
AL7G34910 Arabidopsis lyrata HOM05D002782 ORTHO05D004868 1.1e-15 87.0 63 61.9
Glyma.16G077100 Glycine max HOM05D002782 ORTHO05D004868 1.1e-15 87.0 64 64.1
Medtr5g025280 Medicago truncatula HOM05D002782 ORTHO05D004868 1.1e-15 87.0 75 52.0
Glyma.16G110400 Glycine max HOM05D002782 ORTHO05D004868 2.5e-15 85.9 62 66.1
Sp7g17880 Schrenkiella parvula HOM05D002782 ORTHO05D004868 2.5e-15 85.9 63 63.5
CDE06G2696 Ceratophyllum demersum HOM05D002782 ORTHO05D004868 4.3e-15 85.1 75 56.0
QL12p003810 Quercus lobata HOM05D002782 ORTHO05D004868 4.3e-15 85.1 63 66.7
A01p11140 Brassica napus HOM05D002782 ORTHO05D004868 5.7e-15 84.7 63 61.9
BraA01t01060Z Brassica rapa HOM05D002782 ORTHO05D004868 5.7e-15 84.7 63 61.9
Lj4g0000454 Lotus japonicus HOM05D002782 ORTHO05D004868 5.7e-15 84.7 62 61.3
arahy.Tifrunner.gnm1.ann1.UWV4C8 Arachis hypogaea HOM05D002782 ORTHO05D004868 7.4e-15 84.3 63 57.1
BraA03t14265Z Brassica rapa HOM05D002782 ORTHO05D004868 7.4e-15 84.3 63 61.9
CSS0020383 Camellia sinensis var. sinensis HOM05D002782 ORTHO05D004868 7.4e-15 84.3 63 60.3
Thhalv10024508m.g Eutrema salsugineum HOM05D002782 ORTHO05D004868 9.6e-15 84.0 63 61.9
Nitab4.5_0000058g0140 Nicotiana tabacum HOM05D002782 ORTHO05D004868 9.6e-15 84.0 62 61.3
C01p13180 Brassica napus HOM05D002782 ORTHO05D004868 1.3e-14 83.6 63 60.3
CARHR226050 Cardamine hirsuta HOM05D002782 ORTHO05D004868 1.3e-14 83.6 63 61.9
CDE04G2957 Ceratophyllum demersum HOM05D002782 ORTHO05D004868 1.3e-14 83.6 75 54.7
CDE04G0474 Ceratophyllum demersum HOM05D002782 ORTHO05D004868 1.6e-14 83.2 63 58.7
BcaNung03074 Brassica carinata HOM05D002782 ORTHO05D004868 2.1e-14 82.8 63 60.3
C07p50290 Brassica napus HOM05D002782 ORTHO05D004868 2.1e-14 82.8 63 60.3
BolC7t45531H Brassica oleracea HOM05D002782 ORTHO05D004868 2.1e-14 82.8 63 60.3
Aqoxy2G00804 Aquilegia oxysepala HOM05D002782 ORTHO05D004868 2.8e-14 82.4 62 61.3
Medtr8g072360 Medicago truncatula HOM05D002782 ORTHO05D004868 2.8e-14 82.4 64 59.4
Actinidia33910 Actinidia chinensis HOM05D002782 ORTHO05D004868 3.1e-13 79.0 56 66.1
Mapoly0005s0253 Marchantia polymorpha HOM05D002782 ORTHO05D004868 9.0e-13 77.4 63 57.1
SEGI_18122 Sequoiadendron giganteum HOM05D002782 ORTHO05D004868 1.2e-12 77.0 63 52.4
Os10g0350500 Oryza sativa ssp. japonica HOM05D002782 ORTHO05D004868 2.6e-12 75.9 63 57.1
Lalb_Chr05g0229191 Lupinus albus HOM05D002782 ORTHO05D004868 1.7e-11 73.2 64 50.0
Zm00001eb289880 Zea mays HOM05D002782 ORTHO05D004868 1.7e-11 73.2 75 50.7
AagrBONN_evm.TU.Sc2ySwM_344.3411 Anthoceros agrestis HOM05D002782 ORTHO05D004868 3.8e-11 72.0 63 46.0
Atru.chr8.2646 Acer truncatum HOM05D002782 ORTHO05D004868 3.2e-10 68.9 49 63.3
Pp3c18_13930 Physcomitrium patens HOM05D002782 ORTHO05D004868 5.5e-10 68.2 63 49.2
ATR0087G006 Amborella trichopoda HOM05D002782 ORTHO05D004868 1.6e-09 66.6 63 46.0
Pp3c21_9650 Physcomitrium patens HOM05D002782 ORTHO05D004868 6.1e-09 64.7 63 46.0
Pp3c21_9651 Physcomitrium patens HOM05D002782 ORTHO05D004868 6.1e-09 64.7 63 46.0
Aqoxy3G02845 Aquilegia oxysepala HOM05D002782 ORTHO05D010298 1.3e-08 63.5 63 44.4
SMO347G0180 Selaginella moellendorffii HOM05D002782 ORTHO05D004868 2.3e-08 62.8 75 40.0
BcaC09g51432 Brassica carinata HOM05D002782 ORTHO05D004868 5.1e-08 61.6 63 49.2
Pp3c16_8940 Physcomitrium patens HOM05D002782 ORTHO05D004868 4.3e-07 58.5 61 41.0
VMungo0540G0860 Vigna mungo HOM05D002782 ORTHO05D004868 4.3e-07 58.5 45 62.2
SEGI_28713 Sequoiadendron giganteum HOM05D002782 ORTHO05D004868 5.7e-07 58.2 63 36.5
SEGI_34319 Sequoiadendron giganteum HOM05D002782 ORTHO05D004868 5.7e-07 58.2 63 36.5
Pp3c25_2010 Physcomitrium patens HOM05D002782 ORTHO05D004868 1.3e-06 57.0 61 41.0
arahy.Tifrunner.gnm1.ann1.BS0JGC Arachis hypogaea HOM05D002782 ORTHO05D010298 4.8e-06 55.1 63 31.7
arahy.Tifrunner.gnm1.ann1.Q5XIWF Arachis hypogaea HOM05D002782 ORTHO05D010298 4.8e-06 55.1 63 33.3
Hma1.2p1_0046F.1_g026740 Hydrangea macrophylla HOM05D002782 ORTHO05D010298 8.2e-06 54.3 63 33.3


User provided reference genes

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