Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold464G52010 Striga asiatica HOM05D006504 ORTHO05D007867 2.3e-75 285.4 141 100.0
SGA_v2.0_scaffold227G43151 Striga asiatica HOM05D000329 ORTHO05D002813 8.2e-12 74.3 49 77.6
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 5.9e-10 68.2 92 52.2
SGA_v2.0_scaffold127G34055 Striga asiatica HOM05D006504 ORTHO05D007867 1.0e-09 67.4 34 94.1
MELO3C030574.2 Cucumis melo HOM05D006504 ORTHO05D007867 2.2e-09 66.2 46 71.7
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 2.9e-09 65.9 44 72.7
Migut.I01030 Erythranthe guttata HOM05D006504 ORTHO05D007867 2.9e-09 65.9 43 74.4
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 8.5e-09 64.3 59 55.9
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 1.9e-08 63.2 45 68.9
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 2.5e-08 62.8 51 58.8
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 3.2e-08 62.4 35 82.9
AT1G55080 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 3.2e-08 62.4 60 56.7
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 4.2e-08 62.0 45 68.9
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 7.2e-08 61.2 45 66.7
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 1.2e-07 60.5 45 64.4
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 1.6e-07 60.1 58 56.9
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 1.6e-07 60.1 45 64.4
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 1.6e-07 60.1 45 64.4
arahy.Tifrunner.gnm1.ann1.Y1EG1J Arachis hypogaea HOM05D006504 ORTHO05D007867 1.6e-07 60.1 45 64.4
CARHR044670 Cardamine hirsuta HOM05D006504 ORTHO05D007867 1.6e-07 60.1 49 59.2
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 1.6e-07 60.1 45 64.4
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 1.6e-07 60.1 45 66.7
MD09G1192700 Malus domestica HOM05D006504 ORTHO05D007867 1.6e-07 60.1 44 68.2
PSO210G6889 Papaver somniferum HOM05D006504 ORTHO05D007867 1.6e-07 60.1 33 84.8
PSO210G7829 Papaver somniferum HOM05D006504 ORTHO05D007867 1.6e-07 60.1 33 84.8
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 2.1e-07 59.7 45 64.4
SGA_v2.0_scaffold32G13252 Striga asiatica HOM05D001533 ORTHO05D003743 2.1e-07 59.7 39 66.7
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 2.7e-07 59.3 44 65.9
Nn5g26799 Nelumbo nucifera HOM05D006504 ORTHO05D007867 2.7e-07 59.3 45 62.2
SGA_v2.0_scaffold58G20442 Striga asiatica HOM05D001533 ORTHO05D003743 2.7e-07 59.3 39 69.2
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 2.7e-07 59.3 44 65.9
Nn8g38837 Nelumbo nucifera HOM05D006504 ORTHO05D007867 3.6e-07 58.9 78 46.2
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 3.6e-07 58.9 78 46.2
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 6.1e-07 58.2 44 61.4
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 6.1e-07 58.2 44 63.6
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 6.1e-07 58.2 45 60.0
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 6.1e-07 58.2 45 60.0
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 8.0e-07 57.8 43 65.1
CAN.G675.25 Capsicum annuum HOM05D006504 ORTHO05D007867 1.0e-06 57.4 34 79.4
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 1.0e-06 57.4 113 38.1
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.0e-06 57.4 47 57.4
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 1.0e-06 57.4 45 60.0
Solyc02g069520.2 Solanum lycopersicum HOM05D006504 ORTHO05D007867 1.0e-06 57.4 34 79.4
Sopen02g018660 Solanum pennellii HOM05D006504 ORTHO05D007867 1.0e-06 57.4 34 79.4
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 1.0e-06 57.4 45 60.0
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 1.4e-06 57.0 43 67.4
CDE04G1380 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 1.4e-06 57.0 43 62.8
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 1.4e-06 57.0 44 68.2
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 1.8e-06 56.6 35 77.1
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.8e-06 56.6 43 62.8
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.8e-06 56.6 43 62.8
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 1.8e-06 56.6 43 62.8
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 1.8e-06 56.6 49 61.2
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 1.8e-06 56.6 45 62.2
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 1.8e-06 56.6 45 60.0
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 1.8e-06 56.6 44 63.6
Gohir.A10G058600 Gossypium hirsutum HOM05D006504 ORTHO05D007867 2.3e-06 56.2 36 72.2
PGR102G0591 Punica granatum HOM05D006504 ORTHO05D007867 2.3e-06 56.2 33 75.8
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 2.3e-06 56.2 45 60.0
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 4.0e-06 55.5 36 69.4
Lsat_1_v5_gn_5_135100 Lactuca sativa HOM05D006504 ORTHO05D007867 4.0e-06 55.5 44 65.9
SGA_v2.0_scaffold21G09527 Striga asiatica HOM05D001357 ORTHO05D007867 4.0e-06 55.5 83 45.8
TPR.G19289 Trifolium pratense HOM05D006504 ORTHO05D007867 4.0e-06 55.5 55 50.9
CDE06G0601 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 5.2e-06 55.1 34 70.6
Ciclev10026403m.g Citrus clementina HOM05D006504 ORTHO05D007867 6.7e-06 54.7 89 41.6
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 6.7e-06 54.7 54 53.7
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 8.8e-06 54.3 46 58.7
HanXRQChr12g0360501 Helianthus annuus HOM05D006504 ORTHO05D007867 8.8e-06 54.3 37 73.0


User provided reference genes

Program Settings