Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold45G17289 Striga asiatica HOM05D003963 ORTHO05D004558 4.5e-175 618.2 417 100.0
SalBow6G3757 Salvia bowleyana HOM05D003963 ORTHO05D004558 1.6e-42 177.9 594 39.1
SalBow6G4534 Salvia bowleyana HOM05D003963 ORTHO05D004558 1.6e-42 177.9 594 39.1
MSTRG.16566 Avicennia marina HOM05D003963 ORTHO05D004558 1.1e-40 171.8 641 39.9
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 3.2e-35 153.7 594 38.7
Oeu037196.1 Olea europaea HOM05D003963 ORTHO05D004558 8.6e-33 145.6 485 47.6
Nn5g28887 Nelumbo nucifera HOM05D003963 ORTHO05D004558 4.7e-31 139.8 554 41.9
Oeu037198.2 Olea europaea HOM05D003963 ORTHO05D004558 4.0e-30 136.7 637 36.7
Solyc01g104910.3 Solanum lycopersicum HOM05D003963 ORTHO05D004558 8.9e-30 135.6 239 43.1
Sopen01g047420 Solanum pennellii HOM05D003963 ORTHO05D004558 2.6e-29 134.0 239 43.1
PGSC0003DMG400029740 Solanum tuberosum HOM05D003963 ORTHO05D004558 2.6e-29 134.0 239 43.5
CAN.G523.95 Capsicum annuum HOM05D003963 ORTHO05D004558 3.4e-29 133.7 239 42.7
SalBow5G2159 Salvia bowleyana HOM05D003963 ORTHO05D004558 4.4e-29 133.3 248 43.1
Hma1.2p1_0557F.1_g178060 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 5.8e-29 132.9 604 41.4
Hma1.2p1_0217F.1_g091740 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 1.9e-27 127.9 238 42.4
Nitab4.5_0003748g0020 Nicotiana tabacum HOM05D003963 ORTHO05D004558 3.2e-27 127.1 239 41.4
QL11p019412 Quercus lobata HOM05D003963 ORTHO05D004558 5.4e-27 126.3 245 41.6
Nitab4.5_0002865g0100 Nicotiana tabacum HOM05D003963 ORTHO05D004558 7.0e-27 125.9 239 41.8
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 1.6e-26 124.8 251 38.6
CSS0000527 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 4.6e-26 123.2 250 40.8
CSS0022227 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 4.6e-26 123.2 250 40.8
Cc02_g21840 Coffea canephora HOM05D003963 ORTHO05D004558 6.0e-26 122.9 235 39.1
vmacro01810 Vaccinium macrocarpon HOM05D003963 ORTHO05D004558 7.8e-26 122.5 252 41.3
Nn1g05173 Nelumbo nucifera HOM05D003963 ORTHO05D004558 1.0e-25 122.1 624 36.9
Glyma.08G074900 Glycine max HOM05D003963 ORTHO05D004558 3.9e-25 120.2 236 39.4
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 5.0e-25 119.8 252 38.9
Peaxi162Scf00001g00041 Petunia axillaris HOM05D003963 ORTHO05D004558 5.0e-25 119.8 239 40.2
Peaxi162Scf00001g00043 Petunia axillaris HOM05D003963 ORTHO05D004558 5.0e-25 119.8 239 40.2
Peaxi162Scf00003g00367 Petunia axillaris HOM05D003963 ORTHO05D004558 5.0e-25 119.8 245 38.8
Oeu000233.2 Olea europaea HOM05D003963 ORTHO05D004558 6.6e-25 119.4 244 40.2
Actinidia28070 Actinidia chinensis HOM05D003963 ORTHO05D004558 1.5e-24 118.2 246 40.2
VMungo0251G0315 Vigna mungo HOM05D003963 ORTHO05D004558 1.5e-24 118.2 236 38.6
GSVIVG01038733001 Vitis vinifera HOM05D003963 ORTHO05D004558 1.9e-24 117.9 217 42.9
Potri.003G023300 Populus trichocarpa HOM05D003963 ORTHO05D004558 3.3e-24 117.1 239 38.9
COL.COLO4_20869 Corchorus olitorius HOM05D003963 ORTHO05D004558 4.3e-24 116.7 641 34.3
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 5.6e-24 116.3 236 38.6
Potri.001G206600 Populus trichocarpa HOM05D003963 ORTHO05D004558 7.3e-24 115.9 628 33.9
Sc14g0002710 Simmondsia chinensis HOM05D003963 ORTHO05D004558 7.3e-24 115.9 248 37.5
Manes.04G062400 Manihot esculenta HOM05D003963 ORTHO05D004558 1.2e-23 115.2 244 39.8
EL10Ac8g19340 Beta vulgaris HOM05D003963 ORTHO05D004558 1.6e-23 114.8 242 40.9
Lsat_1_v5_gn_7_80140 Lactuca sativa HOM05D003963 ORTHO05D004558 2.1e-23 114.4 202 43.6
AUR62027385 Chenopodium quinoa HOM05D003963 ORTHO05D004558 4.7e-23 113.2 244 39.8
Sabra03G0014600 Salix brachista HOM05D003963 ORTHO05D004558 4.7e-23 113.2 239 39.7
Thecc.02G143400 Theobroma cacao HOM05D003963 ORTHO05D004558 4.7e-23 113.2 641 33.4
Gohir.D13G056000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 6.2e-23 112.8 252 39.3
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 8.1e-23 112.5 248 38.3
Gorai.013G063300 Gossypium raimondii HOM05D003963 ORTHO05D004558 1.1e-22 112.1 252 39.3
CANSAT11G0470 Cannabis sativa HOM05D003963 ORTHO05D004558 1.4e-22 111.7 240 40.4
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 1.4e-22 111.7 245 40.0
Ciclev10000572m.g Citrus clementina HOM05D003963 ORTHO05D004558 1.4e-22 111.7 236 41.5
Lalb_Chr13g0291591 Lupinus albus HOM05D003963 ORTHO05D004558 1.4e-22 111.7 236 36.4
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 1.4e-22 111.7 234 36.3
Rhsim11G0134700 Rhododendron simsii HOM05D003963 ORTHO05D004558 1.4e-22 111.7 229 40.2
CiPaw.06G151200 Carya illinoinensis HOM05D003963 ORTHO05D004558 1.8e-22 111.3 246 38.6
TPR.G10467 Trifolium pratense HOM05D003963 ORTHO05D004558 2.3e-22 110.9 234 35.9
AUR62031300 Chenopodium quinoa HOM05D003963 ORTHO05D004558 3.1e-22 110.5 244 37.7
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 3.1e-22 110.5 248 38.7
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 5.2e-22 109.8 237 38.8
Atru.chr10.2100 Acer truncatum HOM05D003963 ORTHO05D004558 6.8e-22 109.4 126 50.8
Gohir.D02G195000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 6.8e-22 109.4 251 39.0
TWI59G0617 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 6.8e-22 109.4 261 36.4
Aqoxy6G00464 Aquilegia oxysepala HOM05D003963 ORTHO05D004558 1.2e-21 108.6 240 38.8
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 1.2e-21 108.6 637 33.8
Gohir.A13G065700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.2e-21 108.6 248 38.3
Lj4g0008212 Lotus japonicus HOM05D003963 ORTHO05D004558 1.2e-21 108.6 234 36.8
DCAR_029216 Daucus carota HOM05D003963 ORTHO05D004558 1.5e-21 108.2 237 39.2
Psat7g097440 Pisum sativum HOM05D003963 ORTHO05D004558 1.5e-21 108.2 234 35.5
TAR381G1468 Trochodendron aralioides HOM05D003963 ORTHO05D004558 1.5e-21 108.2 633 36.7
CiPaw.05G038900 Carya illinoinensis HOM05D003963 ORTHO05D004558 2.0e-21 107.8 235 38.7
Gorai.005G217900 Gossypium raimondii HOM05D003963 ORTHO05D004558 2.0e-21 107.8 251 38.6
Duzib248G1667 Durio zibethinus HOM05D003963 ORTHO05D004558 2.6e-21 107.5 252 36.5
Atru.chr6.908 Acer truncatum HOM05D003963 ORTHO05D004558 3.4e-21 107.1 245 38.0
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 3.4e-21 107.1 212 40.1
Sabra03G0014700 Salix brachista HOM05D003963 ORTHO05D004558 3.4e-21 107.1 231 39.4
TWI23G1041 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 7.5e-21 105.9 649 34.4
ECA236G3037 Erigeron canadensis HOM05D003963 ORTHO05D004558 9.9e-21 105.5 213 43.2
unitig_62.g23623 Utricularia gibba HOM05D003963 ORTHO05D004558 1.7e-20 104.8 219 39.7
Actinidia00250 Actinidia chinensis HOM05D003963 ORTHO05D004558 2.9e-20 104.0 221 39.8
Aa31LG1G17380 Aethionema arabicum HOM05D003963 ORTHO05D004558 2.9e-20 104.0 222 41.4
PSO675G1096 Papaver somniferum HOM05D003963 ORTHO05D004558 3.7e-20 103.6 246 36.6
Ah.09g232110 Amaranthus hybridus HOM05D003963 ORTHO05D004558 6.4e-20 102.8 235 37.4
Gohir.A03G171700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 8.3e-20 102.4 131 46.6
Lalb_Chr12g0208491 Lupinus albus HOM05D003963 ORTHO05D004558 8.3e-20 102.4 233 38.2
FAN04G2665 Fragaria x ananassa HOM05D003963 ORTHO05D004558 1.1e-19 102.1 237 37.6
HanXRQChr11g0337121 Helianthus annuus HOM05D003963 ORTHO05D004558 1.9e-19 101.3 204 42.2
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 2.4e-19 100.9 624 36.4
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 2.4e-19 100.9 247 34.8
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 2.4e-19 100.9 243 38.7
Duzib052G0219 Durio zibethinus HOM05D003963 ORTHO05D004558 4.1e-19 100.1 242 35.1
FvH4_5g30651 Fragaria vesca HOM05D003963 ORTHO05D004558 9.2e-19 99.0 237 36.7
Ah.14g085400 Amaranthus hybridus HOM05D003963 ORTHO05D004558 1.6e-18 98.2 247 36.4
PSO541G3622 Papaver somniferum HOM05D003963 ORTHO05D004558 1.6e-18 98.2 245 36.3
RcHm_v2.0_Chr7g0225521 Rosa chinensis HOM05D003963 ORTHO05D004558 1.6e-18 98.2 246 37.4
FAN13G1550 Fragaria x ananassa HOM05D003963 ORTHO05D004558 6.0e-18 96.3 237 36.7
Phvul.002G206700 Phaseolus vulgaris HOM05D003963 ORTHO05D004558 7.8e-18 95.9 202 39.1
Aa31LG3G17400 Aethionema arabicum HOM05D003963 ORTHO05D004558 1.3e-17 95.1 232 37.5
Aa31sc1834G20 Aethionema arabicum HOM05D003963 ORTHO05D004558 1.3e-17 95.1 232 37.5
Sp2g27620 Schrenkiella parvula HOM05D003963 ORTHO05D004558 1.3e-17 95.1 227 37.4
AL8G41940 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 1.7e-17 94.7 227 36.6
AT5G64550 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 3.0e-17 94.0 224 37.1
MELO3C020350.2 Cucumis melo HOM05D003963 ORTHO05D004558 3.0e-17 94.0 254 35.4
Lj9P318T69 Lonicera japonica HOM05D003963 ORTHO05D004558 3.0e-17 94.0 115 55.7
Lalb_Chr07g0189461 Lupinus albus HOM05D003963 ORTHO05D004558 3.9e-17 93.6 209 36.8
Hund06704 Selenicereus undatus HOM05D003963 ORTHO05D004558 5.1e-17 93.2 216 38.0
BcaC03g18430 Brassica carinata HOM05D003963 ORTHO05D004558 8.6e-17 92.4 223 39.5
BraA06t26067Z Brassica rapa HOM05D003963 ORTHO05D004558 8.6e-17 92.4 206 40.8
CsaV3_2G011200 Cucumis sativus L. HOM05D003963 ORTHO05D004558 8.6e-17 92.4 256 34.8
Thhalv10003819m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 8.6e-17 92.4 221 38.5
Lj5C243T4 Lonicera japonica HOM05D003963 ORTHO05D004558 1.1e-16 92.0 114 50.9
Carub.0008s2535 Capsella rubella HOM05D003963 ORTHO05D004558 1.9e-16 91.3 227 36.6
ECA234G1426 Erigeron canadensis HOM05D003963 ORTHO05D004558 1.9e-16 91.3 201 40.8
MD15G1414300 Malus domestica HOM05D003963 ORTHO05D004558 2.5e-16 90.9 247 36.0
A06p31280 Brassica napus HOM05D003963 ORTHO05D004558 3.3e-16 90.5 215 38.1
ClCG06G009720 Citrullus lanatus HOM05D003963 ORTHO05D004558 3.3e-16 90.5 252 34.9
Sed0018276 Sechium edule HOM05D003963 ORTHO05D004558 3.3e-16 90.5 243 35.4
Peaxi162Scf00152g01123 Petunia axillaris HOM05D003963 ORTHO05D004558 4.3e-16 90.1 252 36.9
CARHR278520 Cardamine hirsuta HOM05D003963 ORTHO05D004558 5.6e-16 89.7 218 38.5
Prupe.1G559700 Prunus persica HOM05D003963 ORTHO05D004558 5.6e-16 89.7 243 35.8
Zm00001eb182980 Zea mays HOM05D003963 ORTHO05D004558 1.2e-15 88.6 114 50.0
C03p61710 Brassica napus HOM05D003963 ORTHO05D004558 2.8e-15 87.4 220 38.6
BolC3t18432H Brassica oleracea HOM05D003963 ORTHO05D004558 4.7e-15 86.7 215 37.7
Rhsim11G0135400 Rhododendron simsii HOM05D003963 ORTHO05D004558 4.7e-15 86.7 234 36.3
A02p43350 Brassica napus HOM05D003963 ORTHO05D004558 1.1e-14 85.5 204 37.3
BraA02t09261Z Brassica rapa HOM05D003963 ORTHO05D004558 1.1e-14 85.5 204 37.3
Os02g0575700 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 1.4e-14 85.1 115 49.6
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 1.8e-14 84.7 163 42.3
C02p63440 Brassica napus HOM05D003963 ORTHO05D004558 1.8e-14 84.7 205 37.1
BolC2t12411H Brassica oleracea HOM05D003963 ORTHO05D004558 1.8e-14 84.7 205 37.1
HanXRQChr10g0293231 Helianthus annuus HOM05D003963 ORTHO05D004558 6.8e-14 82.8 410 33.7
BcaB07g29747 Brassica carinata HOM05D003963 ORTHO05D004558 1.5e-13 81.6 211 35.5
Zm00001eb347870 Zea mays HOM05D003963 ORTHO05D010684 2.0e-13 81.3 214 35.5
ATR0564G216 Amborella trichopoda HOM05D003963 ORTHO05D004558 2.6e-13 80.9 211 37.9
Zm00001eb080920 Zea mays HOM05D003963 ORTHO05D004558 2.6e-13 80.9 113 46.0
Os04g0640900 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 3.4e-13 80.5 206 36.4
Sp6g33710 Schrenkiella parvula HOM05D003963 ORTHO05D004558 3.4e-13 80.5 212 39.6
AL6G20100 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 4.4e-13 80.1 218 36.7
Lsat_1_v5_gn_5_106681 Lactuca sativa HOM05D003963 ORTHO05D004558 4.4e-13 80.1 540 37.4
THA.LOC104799580 Tarenaya hassleriana HOM05D003963 ORTHO05D004558 7.6e-13 79.3 249 36.1
Os04g0458200 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 9.9e-13 79.0 199 34.7
CARHR203720 Cardamine hirsuta HOM05D003963 ORTHO05D004558 1.7e-12 78.2 152 41.4
BraA09t36518Z Brassica rapa HOM05D003963 ORTHO05D004558 1.4e-11 75.1 182 37.9
BcaB05g21539 Brassica carinata HOM05D003963 ORTHO05D004558 1.9e-11 74.7 202 39.1
BcaC03g13269 Brassica carinata HOM05D003963 ORTHO05D004558 1.9e-11 74.7 195 33.8
BolC2t06362H Brassica oleracea HOM05D006324 ORTHO05D007463 1.9e-11 74.7 195 33.8
Hma1.2p1_0217F.1_g091720 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 3.2e-11 73.9 89 49.4
A09p08700 Brassica napus HOM05D003963 ORTHO05D004558 4.1e-11 73.6 190 35.8
Thhalv10013049m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 4.1e-11 73.6 215 37.7
Zm00001eb244890 Zea mays HOM05D003963 ORTHO05D004558 2.1e-10 71.2 239 32.6
Zm00001eb423980 Zea mays HOM05D003963 ORTHO05D004558 6.0e-10 69.7 231 30.7
Atru.chr10.2101 Acer truncatum HOM05D003963 ORTHO05D004558 7.8e-10 69.3 227 33.0
A02p00100 Brassica napus HOM05D003963 ORTHO05D004558 7.8e-10 69.3 148 43.2
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 7.8e-10 69.3 180 36.1
CDE05G1767 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 1.0e-09 68.9 157 38.2
BcaB04g19973 Brassica carinata HOM05D003963 ORTHO05D004558 1.7e-09 68.2 110 42.7
CDE02G0069 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 1.7e-09 68.2 219 32.4
BolC9t53891H Brassica oleracea HOM05D003963 ORTHO05D004558 2.3e-09 67.8 141 39.0
BcaC04g23312 Brassica carinata HOM05D003963 ORTHO05D004558 3.0e-09 67.4 141 39.0
C09p09830 Brassica napus HOM05D003963 ORTHO05D004558 3.0e-09 67.4 141 39.0
BraA02t04995Z Brassica rapa HOM05D003963 ORTHO05D004558 5.1e-09 66.6 148 41.9
HPP92_016461 Vanilla planifolia HOM05D003963 ORTHO05D004558 1.9e-08 64.7 110 39.1
Haze_09989 Corylus avellana HOM05D003963 ORTHO05D004558 4.3e-08 63.5 115 45.2
Hma1.2p1_0217F.1_g091680 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 6.2e-07 59.7 65 55.4
MBI05_g29100_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 1.1e-06 58.9 41 63.4
Sc13g0009440 Simmondsia chinensis HOM05D003548 ORTHO05D004066 1.4e-06 58.5 115 39.1
Zm00001eb204020 Zea mays HOM05D003548 ORTHO05D004066 1.4e-06 58.5 104 40.4
Hma1.2p1_0217F.1_g091695 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 1.8e-06 58.2 66 54.5
Hma1.2p1_0217F.1_g091700 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 1.8e-06 58.2 66 54.5
Hma1.2p1_0217F.1_g091710 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 1.8e-06 58.2 66 54.5
Zm00001eb068980 Zea mays HOM05D003963 ORTHO05D004558 2.4e-06 57.8 142 38.0
HPP92_027148 Vanilla planifolia HOM05D003963 ORTHO05D004558 5.2e-06 56.6 197 33.5


User provided reference genes

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