Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold45G17279 Striga asiatica HOM05D001660 ORTHO05D037484 1.4e-50 202.6 101 100.0
SGA_v2.0_scaffold14G07122 Striga asiatica HOM05D066374 ORTHO05D037484 8.2e-38 160.2 115 74.8
vmacro06014 Vaccinium macrocarpon HOM05D001660 ORTHO05D006486 1.7e-14 82.8 58 69.0
MSTRG.6215 Avicennia marina HOM05D001660 ORTHO05D006486 8.2e-14 80.5 53 73.6
CSS0019633 Camellia sinensis var. sinensis HOM05D001660 ORTHO05D006486 1.1e-13 80.1 48 79.2
PGR102G1486 Punica granatum HOM05D001660 ORTHO05D006486 1.1e-13 80.1 53 73.6
GSVIVG01029217001 Vitis vinifera HOM05D001660 ORTHO05D006486 1.1e-13 80.1 53 73.6
Migut.J01480 Erythranthe guttata HOM05D001660 ORTHO05D006486 1.4e-13 79.7 48 79.2
Eucgr.C02309 Eucalyptus grandis HOM05D001660 ORTHO05D006486 1.4e-13 79.7 48 79.2
Lsat_1_v5_gn_8_67640 Lactuca sativa HOM05D001660 ORTHO05D006486 1.4e-13 79.7 53 73.6
Nitab4.5_0000730g0110 Nicotiana tabacum HOM05D001660 ORTHO05D006486 1.4e-13 79.7 48 79.2
Nitab4.5_0004134g0020 Nicotiana tabacum HOM05D001660 ORTHO05D006486 1.4e-13 79.7 48 79.2
Peaxi162Scf00231g00616 Petunia axillaris HOM05D001660 ORTHO05D006486 1.4e-13 79.7 48 79.2
Prupe.1G086000 Prunus persica HOM05D001660 ORTHO05D006486 1.4e-13 79.7 48 79.2
Solyc10g054280.2 Solanum lycopersicum HOM05D001660 ORTHO05D006486 1.4e-13 79.7 48 79.2
Sopen10g024180 Solanum pennellii HOM05D001660 ORTHO05D006486 1.4e-13 79.7 48 79.2
TWI32G0852 Tripterygium wilfordii HOM05D001660 ORTHO05D006486 1.4e-13 79.7 53 73.6
CAN.G2214.1 Capsicum annuum HOM05D001660 ORTHO05D006486 1.8e-13 79.3 51 76.5
CiPaw.08G036300 Carya illinoinensis HOM05D001660 ORTHO05D006486 1.8e-13 79.3 48 79.2
ECA236G3152 Erigeron canadensis HOM05D001660 ORTHO05D006486 1.8e-13 79.3 48 79.2
HanXRQChr05g0143001 Helianthus annuus HOM05D001660 ORTHO05D006486 1.8e-13 79.3 53 73.6
Potri.018G092500 Populus trichocarpa HOM05D001660 ORTHO05D006486 1.8e-13 79.3 53 73.6
Sabra18G0079700 Salix brachista HOM05D001660 ORTHO05D006486 1.8e-13 79.3 53 73.6
Sc14g0001270 Simmondsia chinensis HOM05D001660 ORTHO05D006486 1.8e-13 79.3 53 71.7
unitig_21.g20649 Utricularia gibba HOM05D003152 ORTHO05D004094 1.8e-13 79.3 48 75.0
Cfa013504 Carpinus fangiana HOM05D001660 ORTHO05D006486 2.4e-13 79.0 48 79.2
FAN07G1551 Fragaria x ananassa HOM05D001660 ORTHO05D006486 2.4e-13 79.0 48 77.1
TAR625G0405 Trochodendron aralioides HOM05D001660 ORTHO05D006486 2.4e-13 79.0 52 73.1
Cpa.g.sc233.12 Carica papaya HOM05D001660 ORTHO05D006486 3.1e-13 78.6 53 71.7
Ciclev10009343m.g Citrus clementina HOM05D001660 ORTHO05D006486 3.1e-13 78.6 48 77.1
Duzib168G0313 Durio zibethinus HOM05D001660 ORTHO05D006486 3.1e-13 78.6 53 71.7
Rhsim03G0264400 Rhododendron simsii HOM05D001660 ORTHO05D006486 3.1e-13 78.6 48 77.1
Thecc.09G177800 Theobroma cacao HOM05D001660 ORTHO05D006486 3.1e-13 78.6 53 71.7
Hma1.2p1_1025F.1_g249290 Hydrangea macrophylla HOM05D001660 ORTHO05D006486 4.1e-13 78.2 48 75.0
Nn2g12777 Nelumbo nucifera HOM05D001660 ORTHO05D006486 4.1e-13 78.2 53 71.7
SGA_v2.0_scaffold66G22449 Striga asiatica HOM05D001660 ORTHO05D006486 4.1e-13 78.2 53 71.7
Cc06_g13240 Coffea canephora HOM05D001660 ORTHO05D006486 5.3e-13 77.8 48 77.1
Thhalv10014532m.g Eutrema salsugineum HOM05D001660 ORTHO05D006486 5.3e-13 77.8 53 71.7
Sabra06G0129700 Salix brachista HOM05D001660 ORTHO05D006486 5.3e-13 77.8 48 77.1
Sp6g19150 Schrenkiella parvula HOM05D001660 ORTHO05D006486 5.3e-13 77.8 53 71.7
Dinv42722 Davidia involucrata HOM05D001660 ORTHO05D006486 7.0e-13 77.4 48 75.0
Dinv43379 Davidia involucrata HOM05D001660 ORTHO05D006486 7.0e-13 77.4 48 75.0
Lj4g0006839 Lotus japonicus HOM05D001660 ORTHO05D006486 7.0e-13 77.4 53 69.8
Psat5g065160 Pisum sativum HOM05D001660 ORTHO05D006486 7.0e-13 77.4 53 71.7
THA.LOC104811788 Tarenaya hassleriana HOM05D001660 ORTHO05D006486 7.0e-13 77.4 53 69.8
VMungo1215G3132 Vigna mungo HOM05D001660 ORTHO05D006486 7.0e-13 77.4 53 69.8
Atru.chr7.624 Acer truncatum HOM05D001660 ORTHO05D006486 9.1e-13 77.0 48 75.0
Actinidia17318 Actinidia chinensis HOM05D001660 ORTHO05D006486 9.1e-13 77.0 48 77.1
Glyma.13G096400 Glycine max HOM05D001660 ORTHO05D006486 9.1e-13 77.0 53 69.8
Hund26348 Selenicereus undatus HOM05D001660 ORTHO05D006486 9.1e-13 77.0 53 69.8
Ah.09g229880 Amaranthus hybridus HOM05D001660 ORTHO05D006486 1.2e-12 76.6 52 71.2
EL10Ac8g18284 Beta vulgaris HOM05D001660 ORTHO05D006486 1.2e-12 76.6 53 71.7
FvH4_4g08210 Fragaria vesca HOM05D001660 ORTHO05D006486 1.2e-12 76.6 48 75.0
FAN12G1428 Fragaria x ananassa HOM05D001660 ORTHO05D006486 1.2e-12 76.6 48 75.0
Nitab4.5_0000455g0030 Nicotiana tabacum HOM05D001660 ORTHO05D006486 1.2e-12 76.6 48 77.1
Phvul.003G145700 Phaseolus vulgaris HOM05D001660 ORTHO05D006486 1.2e-12 76.6 53 67.9
QL02p097765 Quercus lobata HOM05D001660 ORTHO05D006486 1.2e-12 76.6 48 77.1
RcHm_v2.0_Chr4g0402461 Rosa chinensis HOM05D001660 ORTHO05D006486 1.2e-12 76.6 48 72.9
Ah.14g083850 Amaranthus hybridus HOM05D001660 ORTHO05D006486 1.6e-12 76.3 53 69.8
Carub.0008s1795 Capsella rubella HOM05D001660 ORTHO05D006486 1.6e-12 76.3 53 69.8
CARHR271230 Cardamine hirsuta HOM05D001660 ORTHO05D006486 1.6e-12 76.3 53 69.8
Dinv41247 Davidia involucrata HOM05D001660 ORTHO05D006486 1.6e-12 76.3 48 75.0
COL.COLO4_37698 Corchorus olitorius HOM05D001660 ORTHO05D006486 2.0e-12 75.9 53 69.8
SalBow6G3880 Salvia bowleyana HOM05D001660 ORTHO05D006486 2.0e-12 75.9 53 71.7
AT5G57440 Arabidopsis thaliana HOM05D001660 ORTHO05D006486 2.6e-12 75.5 53 69.8
MD13G1253800 Malus domestica HOM05D001660 ORTHO05D006486 2.6e-12 75.5 48 75.0
Medtr4g128090 Medicago truncatula HOM05D001660 ORTHO05D006486 2.6e-12 75.5 53 69.8
Aa31LG3G13320 Aethionema arabicum HOM05D001660 ORTHO05D006486 3.5e-12 75.1 53 67.9
arahy.Tifrunner.gnm1.ann1.RX88G0 Arachis hypogaea HOM05D001660 ORTHO05D006486 3.5e-12 75.1 53 69.8
BcaB08g36099 Brassica carinata HOM05D001660 ORTHO05D006486 3.5e-12 75.1 53 67.9
BcaC04g19967 Brassica carinata HOM05D001660 ORTHO05D006486 3.5e-12 75.1 53 67.9
A10p14880 Brassica napus HOM05D001660 ORTHO05D006486 3.5e-12 75.1 53 67.9
C09p49300 Brassica napus HOM05D001660 ORTHO05D006486 3.5e-12 75.1 53 67.9
BolC9t57781H Brassica oleracea HOM05D001660 ORTHO05D006486 3.5e-12 75.1 53 67.9
BraA10t43567Z Brassica rapa HOM05D001660 ORTHO05D006486 3.5e-12 75.1 53 67.9
CANSAT11G2247 Cannabis sativa HOM05D001660 ORTHO05D006486 3.5e-12 75.1 48 75.0
Manes.14G153800 Manihot esculenta HOM05D001660 ORTHO05D006486 3.5e-12 75.1 51 72.5
TPR.G5369 Trifolium pratense HOM05D001660 ORTHO05D006486 3.5e-12 75.1 48 75.0
arahy.Tifrunner.gnm1.ann1.0AS7E9 Arachis hypogaea HOM05D001660 ORTHO05D006486 4.5e-12 74.7 53 67.9
arahy.Tifrunner.gnm1.ann1.8SC2X9 Arachis hypogaea HOM05D001660 ORTHO05D006486 4.5e-12 74.7 53 67.9
BcaC06g32782 Brassica carinata HOM05D001660 ORTHO05D006486 4.5e-12 74.7 53 67.9
Ca_21225_v3 Cicer arietinum L. HOM05D001660 ORTHO05D006486 4.5e-12 74.7 48 75.0
DCAR_014698 Daucus carota HOM05D001660 ORTHO05D006486 4.5e-12 74.7 53 67.9
FAN17G0257 Fragaria x ananassa HOM05D001660 ORTHO05D006486 4.5e-12 74.7 48 72.9
AL8G33410 Arabidopsis lyrata HOM05D001660 ORTHO05D006486 5.9e-12 74.3 53 67.9
FAN22G1272 Fragaria x ananassa HOM05D001660 ORTHO05D006486 5.9e-12 74.3 48 72.9
Gohir.A05G004700 Gossypium hirsutum HOM05D001660 ORTHO05D006486 5.9e-12 74.3 53 67.9
Gohir.D05G005600 Gossypium hirsutum HOM05D001660 ORTHO05D006486 5.9e-12 74.3 53 67.9
Gorai.009G005400 Gossypium raimondii HOM05D001660 ORTHO05D006486 5.9e-12 74.3 53 67.9
arahy.Tifrunner.gnm1.ann1.5J4LWM Arachis hypogaea HOM05D001660 ORTHO05D006486 7.7e-12 73.9 53 67.9
A03p56290 Brassica napus HOM05D001660 ORTHO05D006486 7.7e-12 73.9 53 67.9
C07p54540 Brassica napus HOM05D001660 ORTHO05D006486 7.7e-12 73.9 53 67.9
BolC7t45942H Brassica oleracea HOM05D001660 ORTHO05D006486 7.7e-12 73.9 53 67.9
BraA03t14700Z Brassica rapa HOM05D001660 ORTHO05D006486 7.7e-12 73.9 53 67.9
Thhalv10025858m.g Eutrema salsugineum HOM05D001660 ORTHO05D006486 7.7e-12 73.9 53 67.9
Sp7g23870 Schrenkiella parvula HOM05D001660 ORTHO05D006486 7.7e-12 73.9 53 67.9
Aa31LG3G230 Aethionema arabicum HOM05D001660 ORTHO05D006486 1.0e-11 73.6 53 67.9
Eucgr.C02313 Eucalyptus grandis HOM05D001660 ORTHO05D006486 1.0e-11 73.6 52 71.2
AL7G27190 Arabidopsis lyrata HOM05D001660 ORTHO05D006486 1.3e-11 73.2 53 66.0
AT4G25840 Arabidopsis thaliana HOM05D001660 ORTHO05D006486 1.3e-11 73.2 53 66.0
Carub.0007s1511 Capsella rubella HOM05D001660 ORTHO05D006486 1.3e-11 73.2 53 66.0
AUR62023800 Chenopodium quinoa HOM05D001660 ORTHO05D006486 1.3e-11 73.2 53 67.9
MELO3C017462.2 Cucumis melo HOM05D001660 ORTHO05D006486 2.9e-11 72.0 53 66.0
PSO063G3992 Papaver somniferum HOM05D001660 ORTHO05D006486 2.9e-11 72.0 48 70.8
CARHR233300 Cardamine hirsuta HOM05D001660 ORTHO05D006486 3.8e-11 71.6 53 66.0
Aqoxy7G03078 Aquilegia oxysepala HOM05D001660 ORTHO05D006486 5.0e-11 71.2 48 68.8
Lalb_Chr12g0199411 Lupinus albus HOM05D001660 ORTHO05D006486 5.0e-11 71.2 48 66.7
PSO017G4075 Papaver somniferum HOM05D001660 ORTHO05D006486 6.5e-11 70.9 48 68.8
Phvul.003G145800 Phaseolus vulgaris HOM05D001660 ORTHO05D006486 6.5e-11 70.9 53 66.0
Migut.J01481 Erythranthe guttata HOM05D001660 ORTHO05D006486 8.5e-11 70.5 48 70.8
CsaV3_1G031600 Cucumis sativus L. HOM05D001660 ORTHO05D006486 1.1e-10 70.1 53 64.2
ClCG06G013340 Citrullus lanatus HOM05D001660 ORTHO05D006486 1.5e-10 69.7 53 64.2
Lalb_Chr13g0300231 Lupinus albus HOM05D001660 ORTHO05D006486 1.5e-10 69.7 53 64.2
VMungo1215G0755 Vigna mungo HOM05D001660 ORTHO05D006486 3.2e-10 68.6 48 68.8
Sed0009942 Sechium edule HOM05D001660 ORTHO05D006486 4.2e-10 68.2 48 68.8
AUR62002388 Chenopodium quinoa HOM05D001660 ORTHO05D006486 7.2e-10 67.4 53 64.2
Os08g0243600 Oryza sativa ssp. japonica HOM05D001660 ORTHO05D006486 7.2e-10 67.4 48 66.7
RcHm_v2.0_Chr2g0131751 Rosa chinensis HOM05D001660 ORTHO05D037484 1.6e-09 66.2 47 70.2
MBI16_g39832_MAGBIO Magnolia biondii HOM05D001660 ORTHO05D006486 3.6e-09 65.1 48 68.8
CDE04G2961 Ceratophyllum demersum HOM05D001660 ORTHO05D006486 4.7e-09 64.7 48 64.6
Pp3c21_16490 Physcomitrium patens HOM05D001660 ORTHO05D006486 6.1e-09 64.3 48 62.5
TPR.G5384 Trifolium pratense HOM05D001660 ORTHO05D006486 8.0e-09 63.9 48 62.5
ATR1149G046 Amborella trichopoda HOM05D001660 ORTHO05D006486 3.0e-08 62.0 48 66.7
Mapoly0050s0123 Marchantia polymorpha HOM05D001660 ORTHO05D006486 3.0e-08 62.0 48 64.6
AagrBONN_evm.TU.Sc2ySwM_369.140 Anthoceros agrestis HOM05D001660 ORTHO05D006486 5.2e-08 61.2 48 60.4
SMO115G0322 Selaginella moellendorffii HOM05D001660 ORTHO05D006486 8.8e-08 60.5 48 62.5
ATR0580G358 Amborella trichopoda HOM05D001660 ORTHO05D006486 2.8e-06 55.5 48 60.4
SGA_v2.0_scaffold207G41897 Striga asiatica HOM05D000802 ORTHO05D001074 6.3e-06 54.3 83 42.2


User provided reference genes

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