Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 4.0e-90 334.7 167 100.0
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 3.5e-70 268.5 168 80.4
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 3.9e-69 265.0 169 78.7
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.8e-66 256.1 167 79.0
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 4.0e-66 255.0 167 78.4
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 1.2e-65 253.4 168 79.8
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 1.3e-64 250.0 168 74.4
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 1.7e-64 249.6 168 75.6
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 8.4e-64 247.3 168 73.2
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 4.2e-63 245.0 169 74.0
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 5.4e-63 244.6 166 74.7
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 7.1e-63 244.2 164 76.2
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 9.3e-63 243.8 172 73.8
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 1.2e-62 243.4 166 74.1
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 1.6e-62 243.0 172 68.6
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 2.1e-62 242.7 165 74.5
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 2.1e-62 242.7 168 74.4
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 2.7e-62 242.3 168 72.6
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 1.0e-61 240.4 168 69.6
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 1.8e-61 239.6 168 70.8
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 1.8e-61 239.6 168 72.0
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.5e-60 236.5 169 69.8
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 2.5e-60 235.7 168 71.4
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 3.3e-60 235.3 168 69.6
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 3.3e-60 235.3 162 72.2
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 4.3e-60 235.0 168 70.8
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 7.4e-60 234.2 162 72.8
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 9.6e-60 233.8 164 72.0
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 1.6e-59 233.0 162 72.2
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.6e-59 233.0 163 71.8
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 2.1e-59 232.6 162 72.2
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 4.8e-59 231.5 168 68.5
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 8.1e-59 230.7 162 71.6
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 8.1e-59 230.7 159 73.6
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 8.1e-59 230.7 166 69.9
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 1.8e-58 229.6 165 70.9
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 5.3e-58 228.0 168 66.7
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 6.9e-58 227.6 168 70.2
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.2e-57 226.9 170 69.4
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 1.2e-57 226.9 166 69.3
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.5e-57 226.5 170 68.8
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 1.5e-57 226.5 165 69.1
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.6e-57 225.7 168 65.5
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 2.6e-57 225.7 170 69.4
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 2.6e-57 225.7 164 70.7
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 5.8e-57 224.6 166 68.1
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 7.6e-57 224.2 161 70.2
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 9.9e-57 223.8 167 67.1
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.7e-56 223.0 168 65.5
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 2.2e-56 222.6 168 64.9
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 2.2e-56 222.6 165 70.3
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 2.2e-56 222.6 168 66.1
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 3.8e-56 221.9 165 67.9
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 4.9e-56 221.5 162 68.5
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 4.9e-56 221.5 163 69.9
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 6.4e-56 221.1 167 68.3
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 8.4e-56 220.7 168 65.5
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 8.4e-56 220.7 158 70.3
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 1.1e-55 220.3 163 71.8
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 1.1e-55 220.3 163 69.3
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 1.1e-55 220.3 165 69.1
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 1.9e-55 219.5 168 64.9
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 2.4e-55 219.2 163 71.8
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 7.1e-55 217.6 168 68.5
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 9.3e-55 217.2 166 67.5
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 1.6e-54 216.5 162 67.3
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 2.7e-54 215.7 167 64.1
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 3.5e-54 215.3 163 67.5
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 4.6e-54 214.9 156 69.2
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 7.9e-54 214.2 167 65.3
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 1.3e-53 213.4 164 64.6
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 1.8e-53 213.0 167 67.1
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.3e-53 212.6 168 63.1
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 1.5e-52 209.9 168 64.3
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 1.5e-52 209.9 168 64.3
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 1.5e-52 209.9 165 66.1
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 2.5e-52 209.1 168 64.9
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 3.3e-52 208.8 163 65.6
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 4.3e-52 208.4 164 67.7
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 4.3e-52 208.4 164 67.7
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 4.3e-52 208.4 165 65.5
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 5.6e-52 208.0 168 64.3
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 7.4e-52 207.6 168 65.5
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 7.4e-52 207.6 166 66.9
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 7.4e-52 207.6 165 66.7
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 1.3e-51 206.8 163 65.6
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 1.6e-51 206.5 166 66.9
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 2.1e-51 206.1 166 66.3
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 6.2e-51 204.5 164 67.1
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 8.2e-51 204.1 157 65.0
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 5.3e-50 201.4 170 61.8
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 6.9e-50 201.1 169 63.9
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 6.9e-50 201.1 170 61.8
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 6.9e-50 201.1 158 65.8
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 6.9e-50 201.1 167 61.1
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 5.8e-49 198.0 168 63.1
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 5.8e-49 198.0 169 63.3
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 5.8e-49 198.0 169 63.3
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 1.0e-48 197.2 167 62.9
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 2.9e-48 195.7 169 62.7
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 3.8e-48 195.3 162 61.7
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 3.8e-48 195.3 169 62.1
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 3.8e-48 195.3 170 63.5
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 6.5e-48 194.5 169 61.5
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 3.2e-47 192.2 171 63.2
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 4.2e-47 191.8 153 64.1
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 1.0e-45 187.2 131 72.5
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 1.5e-44 183.3 124 69.4
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 1.6e-43 179.9 156 59.0
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 3.7e-43 178.7 166 57.2
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 8.2e-43 177.6 171 57.3
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 8.2e-43 177.6 171 57.3
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 1.8e-42 176.4 125 75.2
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 2.4e-42 176.0 135 66.7
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 1.3e-40 170.2 120 70.0
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 2.2e-40 169.5 163 57.1
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 8.5e-40 167.5 166 56.0
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 5.5e-39 164.9 123 65.0
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 7.2e-39 164.5 127 65.4
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.8e-37 159.8 170 52.4
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 3.0e-37 159.1 170 51.8
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 6.7e-37 157.9 172 53.5
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.1e-36 157.1 170 51.8
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 2.5e-36 156.0 161 50.3
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 8.2e-35 151.0 162 52.5
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 2.4e-34 149.4 114 65.8
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 5.3e-34 148.3 141 51.8
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 9.1e-34 147.5 130 60.0
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 7.7e-33 144.4 154 53.9
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 1.0e-32 144.1 175 49.1
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.3e-32 143.7 163 50.9
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 2.1e-30 136.3 99 66.7
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 2.1e-30 136.3 116 57.8
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 1.5e-28 130.2 124 54.8
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 3.3e-28 129.0 156 44.2
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 2.8e-27 125.9 159 43.4
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 3.7e-27 125.6 159 42.1
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 6.3e-27 124.8 88 71.6
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 1.1e-26 124.0 147 49.7
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 2.4e-26 122.9 121 46.3
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 3.4e-25 119.0 133 45.1
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 5.5e-23 111.7 81 70.4
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 3.6e-22 109.0 162 45.7
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 1.8e-21 106.7 75 68.0
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 4.8e-19 98.6 63 69.8
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 1.7e-16 90.1 79 55.7
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 2.9e-16 89.4 61 78.7
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 2.9e-16 89.4 61 77.0
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 5.0e-16 88.6 66 72.7
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 8.5e-16 87.8 63 60.3
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 9.4e-15 84.3 68 67.6
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 3.0e-13 79.3 76 46.1
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 8.8e-13 77.8 57 75.4
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 8.8e-13 77.8 57 75.4
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 8.8e-13 77.8 61 70.5
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 2.0e-12 76.6 62 62.9
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 2.6e-12 76.3 83 54.2
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 4.4e-12 75.5 53 77.4
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 4.8e-11 72.0 62 61.3
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 1.8e-10 70.1 63 47.6
Sabra14G0031400 Salix brachista HOM05D004294 ORTHO05D004899 1.6e-09 67.0 115 35.7
TAR371G0914 Trochodendron aralioides HOM05D004294 ORTHO05D004899 2.7e-09 66.2 44 70.5
Cfa025555 Carpinus fangiana HOM05D004294 ORTHO05D124452 1.0e-08 64.3 84 38.1
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 3.8e-08 62.4 60 56.7
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 1.5e-07 60.5 71 40.8
arahy.Tifrunner.gnm1.ann1.L9EVLZ Arachis hypogaea HOM05D047065 ORTHO05D004899 3.2e-07 59.3 115 33.9
MCO05G667 Micromonas commoda HOM05D004294 ORTHO05D004899 5.5e-07 58.5 53 49.1


User provided reference genes

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