Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold45G17227 Striga asiatica HOM05D004648 ORTHO05D005782 6.6e-106 387.5 211 100.0
Migut.K00806 Erythranthe guttata HOM05D004648 ORTHO05D005782 1.2e-83 313.5 210 79.0
SalBow5G0620 Salvia bowleyana HOM05D004648 ORTHO05D005782 3.0e-82 308.9 209 78.5
SalBow5G1021 Salvia bowleyana HOM05D004648 ORTHO05D005782 6.6e-82 307.8 209 78.5
Cc07_g14000 Coffea canephora HOM05D004648 ORTHO05D005782 1.9e-68 263.1 213 68.1
Nitab4.5_0010932g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 6.6e-66 254.6 212 66.5
Dinv13591 Davidia involucrata HOM05D004648 ORTHO05D005782 3.3e-65 252.3 198 65.2
unitig_748.g7247 Utricularia gibba HOM05D000258 ORTHO05D001416 7.3e-65 251.1 209 66.0
Sopen11g005530 Solanum pennellii HOM05D004648 ORTHO05D005782 3.6e-64 248.8 211 64.5
Nn5g29856 Nelumbo nucifera HOM05D004648 ORTHO05D005782 4.8e-64 248.4 205 62.9
Solyc11g010720.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 1.8e-63 246.5 211 64.0
AUR62017983 Chenopodium quinoa HOM05D004648 ORTHO05D005782 9.0e-63 244.2 203 65.5
PGSC0003DMG400016127 Solanum tuberosum HOM05D004648 ORTHO05D005782 4.5e-62 241.9 211 63.5
CSS0033796 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 6.4e-61 238.0 209 60.3
EL10Ac6g15193 Beta vulgaris HOM05D004648 ORTHO05D005782 1.9e-60 236.5 205 62.4
CSS0043130 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 3.2e-60 235.7 209 59.3
TAR376G0132 Trochodendron aralioides HOM05D004648 ORTHO05D005782 3.2e-60 235.7 208 60.1
Actinidia06509 Actinidia chinensis HOM05D004648 ORTHO05D005782 3.5e-59 232.3 209 58.9
CAN.G252.11 Capsicum annuum HOM05D004648 ORTHO05D005782 4.6e-59 231.9 211 61.1
Ah.03g139860 Amaranthus hybridus HOM05D004648 ORTHO05D005782 6.0e-59 231.5 205 62.4
Sc16g0000570 Simmondsia chinensis HOM05D004648 ORTHO05D005782 6.0e-59 231.5 209 58.4
AUR62003673 Chenopodium quinoa HOM05D004648 ORTHO05D005782 1.0e-58 230.7 203 61.1
Aqoxy6G00847 Aquilegia oxysepala HOM05D004648 ORTHO05D005782 1.8e-58 229.9 209 56.9
Hma1.2p1_0802F.1_g220630 Hydrangea macrophylla HOM05D004648 ORTHO05D005782 1.8e-58 229.9 210 59.5
RcHm_v2.0_Chr2g0111021 Rosa chinensis HOM05D004648 ORTHO05D005782 8.7e-58 227.6 211 59.7
Prupe.6G203100 Prunus persica HOM05D004648 ORTHO05D005782 9.6e-57 224.2 213 58.2
DCAR_003444 Daucus carota HOM05D004648 ORTHO05D005782 2.1e-56 223.0 203 60.6
Peaxi162Scf00085g00235 Petunia axillaris HOM05D004648 ORTHO05D005782 4.8e-56 221.9 200 62.0
PSO541G6255 Papaver somniferum HOM05D004648 ORTHO05D005782 6.2e-56 221.5 209 57.9
Rhsim10G0173500 Rhododendron simsii HOM05D004648 ORTHO05D005782 1.4e-55 220.3 216 57.9
CiPaw.07G046500 Carya illinoinensis HOM05D004648 ORTHO05D005782 1.8e-55 219.9 210 56.7
Cpa.g.sc21.29 Carica papaya HOM05D004648 ORTHO05D005782 3.1e-55 219.2 205 58.5
QL06p035918 Quercus lobata HOM05D004648 ORTHO05D005782 4.0e-55 218.8 212 56.6
MD15G1310800 Malus domestica HOM05D004648 ORTHO05D005782 1.5e-54 216.9 212 56.1
FvH4_1g19520 Fragaria vesca HOM05D004648 ORTHO05D005782 3.4e-54 215.7 211 56.4
Manes.13G100500 Manihot esculenta HOM05D004648 ORTHO05D005782 3.8e-53 212.2 206 56.3
TAR628G0215 Trochodendron aralioides HOM05D004648 ORTHO05D005782 4.9e-53 211.8 205 56.6
CiPaw.08G056600 Carya illinoinensis HOM05D004648 ORTHO05D005782 4.2e-52 208.8 206 54.4
Gorai.009G228900 Gossypium raimondii HOM05D004648 ORTHO05D005782 1.6e-51 206.8 207 54.6
CANSAT25G1975 Cannabis sativa HOM05D004648 ORTHO05D005782 4.6e-51 205.3 205 54.1
Gohir.D05G221700 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.0e-50 204.1 207 54.6
Duzib093G0339 Durio zibethinus HOM05D004648 ORTHO05D005782 2.3e-50 203.0 206 55.3
Atru.chr13.996 Acer truncatum HOM05D004648 ORTHO05D005782 3.0e-50 202.6 206 52.4
Nitab4.5_0000131g0120 Nicotiana tabacum HOM05D000239 ORTHO05D000484 5.1e-50 201.8 211 54.0
Duzib041G0289 Durio zibethinus HOM05D004648 ORTHO05D005782 6.7e-50 201.4 207 54.1
Thecc.08G072400 Theobroma cacao HOM05D004648 ORTHO05D005782 6.7e-50 201.4 207 53.6
Cc10_g08430 Coffea canephora HOM05D004648 ORTHO05D005782 8.7e-50 201.1 205 52.2
Gohir.A05G219000 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.5e-49 200.3 207 53.6
Nitab4.5_0011537g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 2.5e-49 199.5 211 54.0
Prupe.1G533800 Prunus persica HOM05D004648 ORTHO05D005782 4.3e-49 198.7 212 50.5
PGSC0003DMG401009338 Solanum tuberosum HOM05D004648 ORTHO05D005782 1.6e-48 196.8 211 51.2
COL.COLO4_35262 Corchorus olitorius HOM05D004648 ORTHO05D005782 2.1e-48 196.4 206 53.9
Oeu054771.1 Olea europaea HOM05D004648 ORTHO05D005782 2.1e-48 196.4 206 51.9
RcHm_v2.0_Chr7g0235251 Rosa chinensis HOM05D004648 ORTHO05D005782 2.1e-48 196.4 212 50.5
CsaV3_2G030200 Cucumis sativus L. HOM05D004648 ORTHO05D005782 2.8e-48 196.1 205 52.7
Sabra02G0087800 Salix brachista HOM05D004648 ORTHO05D005782 2.8e-48 196.1 206 51.0
MBI16_g31265_MAGBIO Magnolia biondii HOM05D004648 ORTHO05D005782 6.2e-48 194.9 199 52.3
MELO3C011082.2 Cucumis melo HOM05D004648 ORTHO05D005782 8.2e-48 194.5 205 52.2
Eucgr.F00428 Eucalyptus grandis HOM05D004648 ORTHO05D005782 1.8e-47 193.4 206 54.9
MD15G1387400 Malus domestica HOM05D004648 ORTHO05D005782 1.8e-47 193.4 208 49.5
QL09p018000 Quercus lobata HOM05D004648 ORTHO05D005782 1.8e-47 193.4 213 50.7
ClCG08G011630 Citrullus lanatus HOM05D004648 ORTHO05D005782 2.4e-47 193.0 205 52.2
Cfa006874 Carpinus fangiana HOM05D004648 ORTHO05D005782 4.1e-47 192.2 211 52.6
Ciclev10002461m.g Citrus clementina HOM05D004648 ORTHO05D005782 4.1e-47 192.2 206 53.9
Sed0006831 Sechium edule HOM05D004648 ORTHO05D005782 5.3e-47 191.8 205 52.7
Cfa013807 Carpinus fangiana HOM05D004648 ORTHO05D005782 1.2e-46 190.7 206 49.5
Gorai.007G058400 Gossypium raimondii HOM05D004648 ORTHO05D005782 1.5e-46 190.3 213 51.6
Peaxi162Scf00454g10013 Petunia axillaris HOM05D004648 ORTHO05D005782 1.5e-46 190.3 210 50.5
Potri.002G111300 Populus trichocarpa HOM05D004648 ORTHO05D005782 1.5e-46 190.3 203 50.7
Haze_03885 Corylus avellana HOM05D004648 ORTHO05D005782 3.4e-46 189.1 211 52.6
Glyma.06G097600 Glycine max HOM05D004648 ORTHO05D005782 4.5e-46 188.7 213 49.8
Solyc04g076470.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 5.8e-46 188.3 211 51.2
TWI74G0279 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 5.8e-46 188.3 208 52.4
Sopen04g030220 Solanum pennellii HOM05D004648 ORTHO05D005782 1.0e-45 187.6 211 50.7
PGR042G2328 Punica granatum HOM05D004648 ORTHO05D005782 1.3e-45 187.2 207 51.7
Manes.05G189800 Manihot esculenta HOM05D004648 ORTHO05D005782 1.7e-45 186.8 208 49.5
Gohir.D11G053600 Gossypium hirsutum HOM05D004648 ORTHO05D005782 2.9e-45 186.0 212 50.9
Thecc.01G089300 Theobroma cacao HOM05D004648 ORTHO05D005782 3.8e-45 185.7 213 48.8
Glyma.04G095900 Glycine max HOM05D004648 ORTHO05D005782 6.5e-45 184.9 213 50.2
Duzib264G0833 Durio zibethinus HOM05D004648 ORTHO05D005782 1.9e-44 183.3 209 50.2
Gohir.A11G050200 Gossypium hirsutum HOM05D004648 ORTHO05D005782 2.5e-44 183.0 212 49.5
MSTRG.24425 Avicennia marina HOM05D004648 ORTHO05D005782 3.2e-44 182.6 206 52.4
MD08G1200200 Malus domestica HOM05D004648 ORTHO05D005782 4.2e-44 182.2 208 47.1
TWI12G1102 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 4.2e-44 182.2 207 50.7
vmacro04645 Vaccinium macrocarpon HOM05D004648 ORTHO05D005782 9.3e-44 181.0 200 49.5
HanXRQChr09g0250941 Helianthus annuus HOM05D004648 ORTHO05D005782 1.6e-43 180.3 210 47.6
Lj4C87T6 Lonicera japonica HOM05D004648 ORTHO05D005782 2.1e-43 179.9 180 55.6
COL.COLO4_27367 Corchorus olitorius HOM05D004648 ORTHO05D005782 3.5e-43 179.1 216 48.1
THA.LOC104801678 Tarenaya hassleriana HOM05D004648 ORTHO05D005782 4.6e-43 178.7 216 46.8
Migut.N02848 Erythranthe guttata HOM05D004648 ORTHO05D005782 7.9e-43 177.9 207 52.7
Lj1g0017346 Lotus japonicus HOM05D004648 ORTHO05D005782 1.3e-42 177.2 211 47.4
FvH4_5g34561 Fragaria vesca HOM05D004648 ORTHO05D005782 1.8e-42 176.8 216 47.7
Lalb_Chr04g0252771 Lupinus albus HOM05D004648 ORTHO05D005782 1.8e-42 176.8 213 46.9
VMungo1309G1710 Vigna mungo HOM05D004648 ORTHO05D005782 1.8e-42 176.8 213 47.9
HPP92_003649 Vanilla planifolia HOM05D004648 ORTHO05D005782 2.3e-42 176.4 211 50.2
Zm00001eb235460 Zea mays HOM05D004648 ORTHO05D005782 2.3e-42 176.4 208 50.5
Actinidia19623 Actinidia chinensis HOM05D004648 ORTHO05D005782 3.0e-42 176.0 200 50.5
arahy.Tifrunner.gnm1.ann1.AB919Y Arachis hypogaea HOM05D004648 ORTHO05D005782 3.0e-42 176.0 215 48.4
CANSAT01G3166 Cannabis sativa HOM05D004648 ORTHO05D005782 6.7e-42 174.9 213 46.9
SGA_v2.0_scaffold48G17844 Striga asiatica HOM05D004648 ORTHO05D005782 8.7e-42 174.5 204 51.0
arahy.Tifrunner.gnm1.ann1.S42CYX Arachis hypogaea HOM05D004648 ORTHO05D005782 1.9e-41 173.3 215 47.9
Lj4g0004938 Lotus japonicus HOM05D004648 ORTHO05D005782 5.7e-41 171.8 214 49.1
Phvul.003G288400 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 5.7e-41 171.8 216 47.7
DCAR_009556 Daucus carota HOM05D004648 ORTHO05D005782 1.3e-40 170.6 206 49.0
Ca_16010_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 2.8e-40 169.5 208 47.1
Phvul.009G035900 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 3.7e-40 169.1 213 46.9
Psat5g049360 Pisum sativum HOM05D004648 ORTHO05D005782 4.8e-40 168.7 199 49.2
Carub.0008s2638 Capsella rubella HOM05D004648 ORTHO05D005782 6.3e-40 168.3 207 47.3
Rhsim07G0212500 Rhododendron simsii HOM05D004648 ORTHO05D005782 6.3e-40 168.3 187 49.2
ATR0767G042 Amborella trichopoda HOM05D004648 ORTHO05D005782 1.4e-39 167.2 209 46.4
AT5G65520 Arabidopsis thaliana HOM05D004648 ORTHO05D005782 6.9e-39 164.9 195 47.7
AL8G43110 Arabidopsis lyrata HOM05D004648 ORTHO05D005782 1.5e-38 163.7 195 48.2
Lalb_Chr08g0242581 Lupinus albus HOM05D004648 ORTHO05D005782 1.5e-38 163.7 214 45.8
Medtr3g100100 Medicago truncatula HOM05D004648 ORTHO05D005782 2.0e-38 163.3 199 48.7
TPR.G6370 Trifolium pratense HOM05D004648 ORTHO05D005782 4.5e-38 162.2 199 47.7
Glyma.08G278900 Glycine max HOM05D004648 ORTHO05D005782 2.9e-37 159.5 215 46.5
CAN.G475.10 Capsicum annuum HOM05D004648 ORTHO05D005782 3.8e-37 159.1 218 43.1
CARHR279500 Cardamine hirsuta HOM05D004648 ORTHO05D005782 6.5e-37 158.3 205 45.4
Lju188C4T4 Lonicera japonica HOM05D004648 ORTHO05D005782 1.1e-36 157.5 137 61.3
BcaB04g20019 Brassica carinata HOM05D004648 ORTHO05D005782 2.5e-36 156.4 202 45.5
Medtr8g068400 Medicago truncatula HOM05D004648 ORTHO05D005782 3.2e-36 156.0 214 44.9
Thhalv10005489m.g Eutrema salsugineum HOM05D004648 ORTHO05D005782 4.2e-36 155.6 198 46.0
A09p09070 Brassica napus HOM05D004648 ORTHO05D005782 9.4e-36 154.5 191 47.6
BcaC04g23260 Brassica carinata HOM05D004648 ORTHO05D005782 1.6e-35 153.7 191 47.1
BolC9t53956H Brassica oleracea HOM05D004648 ORTHO05D005782 1.6e-35 153.7 191 47.1
BraA09t36559Z Brassica rapa HOM05D004648 ORTHO05D005782 2.1e-35 153.3 191 47.6
Lsat_1_v5_gn_8_20321 Lactuca sativa HOM05D004648 ORTHO05D005782 3.6e-35 152.5 206 43.7
Glyma.14G182600 Glycine max HOM05D004648 ORTHO05D005782 6.1e-35 151.8 206 44.7
HanXRQChr15g0485271 Helianthus annuus HOM05D004648 ORTHO05D005782 1.0e-34 151.0 187 46.5
Sc26g0003620 Simmondsia chinensis HOM05D004648 ORTHO05D005782 3.9e-34 149.1 206 44.7
C09p10560 Brassica napus HOM05D004648 ORTHO05D005782 1.5e-33 147.1 183 47.0
Psat4g116960 Pisum sativum HOM05D004648 ORTHO05D005782 1.5e-33 147.1 210 43.3
CDE02G1147 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 4.3e-33 145.6 187 47.1
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 9.7e-33 144.4 162 50.0
HanXRQChr02g0046211 Helianthus annuus HOM05D004648 ORTHO05D005782 9.7e-33 144.4 210 43.3
Sp2g28620 Schrenkiella parvula HOM05D004648 ORTHO05D005782 1.3e-32 144.1 191 45.5
Ca_22619_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 2.8e-32 142.9 139 52.5
SEGI_01557 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 2.8e-32 142.9 206 43.7
VMungo0647G0422 Vigna mungo HOM05D004648 ORTHO05D005782 1.1e-31 141.0 204 43.1
ECA247G1048 Erigeron canadensis HOM05D004648 ORTHO05D005782 2.4e-31 139.8 206 39.8
CDE04G0511 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 9.1e-31 137.9 199 42.2
Os02g0204000 Oryza sativa ssp. japonica HOM05D004648 ORTHO05D005782 2.6e-30 136.3 209 43.1
SEGI_08621 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 2.6e-30 136.3 201 40.8
Ah.05g171370 Amaranthus hybridus HOM05D004648 ORTHO05D005782 7.4e-25 118.2 214 37.4
EL10Ac2g03122 Beta vulgaris HOM05D004648 ORTHO05D005782 3.7e-24 115.9 115 55.7
AagrBONN_evm.TU.Sc2ySwM_368.397 Anthoceros agrestis HOM05D004648 ORTHO05D005782 2.4e-23 113.2 202 35.6
Mapoly0104s0024 Marchantia polymorpha HOM05D004648 ORTHO05D005782 2.0e-22 110.2 205 34.6
Sc26g0002990 Simmondsia chinensis HOM05D004648 ORTHO05D005782 3.5e-22 109.4 136 49.3
EL10Ac1g00504 Beta vulgaris HOM05D004648 ORTHO05D005782 1.0e-21 107.8 213 34.7
Sc26g0002870 Simmondsia chinensis HOM05D004648 ORTHO05D005782 1.9e-20 103.6 136 47.1
DCAR_009557 Daucus carota HOM05D004648 ORTHO05D005782 1.6e-19 100.5 115 48.7
CSS0037477 Camellia sinensis var. sinensis HOM05D000739 ORTHO05D109703 7.0e-07 58.5 84 41.7
FAN28G2101 Fragaria x ananassa HOM05D004648 ORTHO05D005782 5.9e-06 55.5 56 53.6


User provided reference genes

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