Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold45G17195 Striga asiatica HOM05D005365 ORTHO05D006910 0.0e+00 1295.0 652 100.0
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 1.9e-151 540.4 350 82.6
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 4.7e-110 402.9 350 62.6
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 6.1e-110 402.5 365 60.0
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 8.0e-94 349.0 355 53.2
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 8.3e-91 339.0 351 52.1
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 1.4e-90 338.2 351 53.0
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 4.1e-90 336.7 374 50.5
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 5.4e-90 336.3 351 53.0
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 7.0e-90 335.9 365 51.8
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 1.2e-89 335.1 351 53.8
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 4.5e-89 333.2 374 50.3
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 5.9e-89 332.8 355 51.0
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 5.6e-87 326.2 377 49.3
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 5.6e-87 326.2 372 49.7
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 8.0e-86 322.4 358 48.3
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 1.0e-85 322.0 356 50.3
GSVIVG01014028001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.0e-85 322.0 355 50.1
Actinidia17204 Actinidia chinensis HOM05D005365 ORTHO05D006910 4.0e-85 320.1 355 49.9
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 6.8e-85 319.3 356 50.3
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 1.2e-84 318.5 380 47.4
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 4.4e-84 316.6 355 50.4
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 2.9e-83 313.9 367 47.7
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 3.7e-83 313.5 370 48.9
Aqoxy2G03929 Aquilegia oxysepala HOM05D005365 ORTHO05D006910 2.4e-82 310.8 355 47.9
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 2.4e-82 310.8 353 48.7
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 2.4e-82 310.8 362 47.2
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 2.4e-82 310.8 356 50.0
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 1.2e-81 308.5 370 47.0
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 2.0e-81 307.8 363 47.9
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 2.7e-81 307.4 354 48.9
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 4.6e-81 306.6 387 45.7
MD09G1270700 Malus domestica HOM05D005365 ORTHO05D006910 5.9e-81 306.2 363 47.7
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 1.3e-80 305.1 354 48.3
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 3.9e-80 303.5 366 46.4
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 6.6e-80 302.8 391 46.3
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 8.6e-80 302.4 366 46.4
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 3.3e-79 300.4 350 48.0
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 1.2e-78 298.5 353 48.4
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 1.4e-77 295.0 354 47.2
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 6.8e-77 292.7 371 45.6
GSVIVG01038363001 Vitis vinifera HOM05D005365 ORTHO05D006910 6.8e-77 292.7 274 55.5
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 1.5e-76 291.6 357 45.9
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 9.8e-76 288.9 351 47.0
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 2.2e-75 287.7 341 49.6
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 1.1e-74 285.4 353 47.0
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 4.1e-74 283.5 365 43.8
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 2.0e-73 281.2 353 43.1
Phvul.001G229600 Phaseolus vulgaris HOM05D005365 ORTHO05D006910 2.0e-73 281.2 353 43.3
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 4.6e-73 280.0 365 43.8
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 4.6e-73 280.0 353 43.3
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 4.6e-73 280.0 353 43.3
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 6.0e-73 279.6 348 45.1
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 7.8e-73 279.3 364 45.3
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 7.8e-73 279.3 353 43.9
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 1.3e-72 278.5 369 44.2
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 3.0e-72 277.3 348 45.7
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 3.0e-72 277.3 348 45.7
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 5.0e-72 276.6 350 46.0
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 1.1e-71 275.4 354 44.4
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 2.5e-71 274.2 347 43.8
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 2.5e-71 274.2 372 43.8
Psat5g120520 Pisum sativum HOM05D005365 ORTHO05D006910 4.3e-71 273.5 369 42.0
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 5.6e-71 273.1 365 41.9
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 1.6e-70 271.6 346 43.9
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 2.8e-70 270.8 348 44.0
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 3.6e-70 270.4 352 43.2
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 3.6e-70 270.4 365 43.6
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 6.2e-70 269.6 348 44.0
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 6.2e-70 269.6 348 44.0
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 6.2e-70 269.6 363 42.1
Medtr3g065300 Medicago truncatula HOM05D005365 ORTHO05D006910 6.2e-70 269.6 355 42.8
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 8.1e-70 269.2 348 44.0
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 2.3e-69 267.7 348 44.0
PGR004G1341 Punica granatum HOM05D005365 ORTHO05D006910 4.4e-68 263.5 354 45.2
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 2.2e-67 261.2 349 42.7
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 2.2e-67 261.2 356 43.8
Ca_17092_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 4.9e-67 260.0 356 43.0
Ca_17099_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 4.9e-67 260.0 356 43.0
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 6.4e-67 259.6 350 45.7
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 8.3e-67 259.2 349 42.7
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 5.4e-66 256.5 354 44.6
Eucgr.F02871 Eucalyptus grandis HOM05D005365 ORTHO05D006910 1.6e-65 255.0 347 42.1
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 3.0e-64 250.8 364 43.4
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 6.6e-64 249.6 355 43.7
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 2.8e-62 244.2 377 39.5
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 2.8e-62 244.2 353 42.5
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 3.6e-62 243.8 352 40.9
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 3.1e-61 240.7 353 41.9
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 3.1e-61 240.7 356 43.5
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 8.9e-61 239.2 372 40.6
Hund13093 Selenicereus undatus HOM05D005365 ORTHO05D006910 6.0e-57 226.5 355 39.4
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 3.0e-56 224.2 274 47.4
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 6.6e-56 223.0 356 40.2
Os06g0256000 Oryza sativa ssp. japonica HOM05D005365 ORTHO05D006910 2.4e-50 204.5 292 41.1
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 9.3e-50 202.6 210 50.0
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 2.3e-48 198.0 180 55.6
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 6.6e-48 196.4 180 55.0
SGA_v2.0_scaffold45G17203 Striga asiatica HOM05D013892 ORTHO05D401942 4.9e-43 180.3 221 50.2
Sc11g0004580 Simmondsia chinensis HOM05D005365 ORTHO05D006910 2.7e-41 174.5 179 52.5
CAN.G691.4 Capsicum annuum HOM05D005365 ORTHO05D006910 1.3e-40 172.2 181 55.2
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 2.1e-38 164.9 179 49.2
TPR.G24911 Trifolium pratense HOM05D005365 ORTHO05D006910 6.2e-38 163.3 181 44.8
SGA_v2.0_scaffold45G17214 Striga asiatica HOM05D013892 ORTHO05D401501 4.9e-35 153.7 240 42.1
Oeu012492.1 Olea europaea HOM05D005365 ORTHO05D006910 1.1e-34 152.5 217 47.9
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 6.0e-33 146.7 159 46.5
Pp3c22_14670 Physcomitrium patens HOM05D005365 ORTHO05D006910 1.0e-32 146.0 360 33.3
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 1.1e-29 136.0 352 29.8
SGA_v2.0_scaffold45G17213 Striga asiatica HOM05D013892 ORTHO05D402817 1.4e-29 135.6 223 42.6
SMO367G0263 Selaginella moellendorffii HOM05D005365 ORTHO05D006910 1.4e-26 125.6 332 31.0
Mapoly0032s0119 Marchantia polymorpha HOM05D005365 ORTHO05D006910 9.3e-26 122.9 295 36.3
Rhsim10G0178300 Rhododendron simsii HOM05D005365 ORTHO05D006910 9.7e-23 112.8 128 45.3
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05D005365 ORTHO05D006910 1.3e-22 112.5 402 28.6
TPR.G674 Trifolium pratense HOM05D005365 ORTHO05D006910 2.5e-18 98.2 164 40.9
CBR_g39392 Chara braunii HOM05D000019 ORTHO05D000048 9.7e-15 86.3 297 25.3
HPP92_006139 Vanilla planifolia HOM05D005365 ORTHO05D006910 6.9e-13 80.1 154 37.0
SGA_v2.0_scaffold45G17119 Striga asiatica HOM05D013892 ORTHO05D403040 2.0e-12 78.6 175 34.3
SGA_v2.0_scaffold131G34459 Striga asiatica HOM05D013892 ORTHO05D400499 1.7e-11 75.5 158 35.4
SGA_v2.0_scaffold45G17198 Striga asiatica HOM05D013892 ORTHO05D403700 8.8e-08 63.2 159 32.7
SGA_v2.0_scaffold45G17207 Striga asiatica HOM05D001657 ORTHO05D001557 2.0e-07 62.0 38 78.9
SGA_v2.0_scaffold45G17120 Striga asiatica HOM05D013892 ORTHO05D405224 2.2e-06 58.5 185 28.6


User provided reference genes

Program Settings