Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 0.0e+00 2030.8 1083 100.0
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 0.0e+00 1408.3 1052 73.2
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 0.0e+00 1407.9 1072 70.2
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 0.0e+00 1202.2 1077 60.0
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 0.0e+00 1192.9 1050 60.5
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 0.0e+00 1190.6 1050 60.4
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1182.9 1063 58.6
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 0.0e+00 1177.5 1061 59.2
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 0.0e+00 1174.5 1089 58.5
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1167.1 1064 58.6
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 0.0e+00 1161.7 1051 59.4
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 0.0e+00 1154.8 1050 59.4
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 0.0e+00 1152.1 1056 58.0
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 0.0e+00 1148.3 1066 58.5
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 0.0e+00 1148.3 1057 58.6
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 0.0e+00 1145.2 1064 58.1
MD09G1270700 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1143.3 1071 58.4
GSVIVG01014028001 Vitis vinifera HOM05D005365 ORTHO05D006910 0.0e+00 1141.3 1072 58.0
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 0.0e+00 1135.2 1061 56.6
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1129.8 1055 59.0
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 0.0e+00 1125.9 1062 57.7
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1125.5 1066 57.9
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1125.2 1065 58.0
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 0.0e+00 1125.2 1176 54.2
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 0.0e+00 1122.1 1053 59.3
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 0.0e+00 1121.3 1069 57.5
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 0.0e+00 1119.8 1053 56.7
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 0.0e+00 1117.1 983 60.4
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 0.0e+00 1116.3 1084 57.6
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 0.0e+00 1114.4 1056 57.4
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1114.4 1055 58.9
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 0.0e+00 1113.2 1057 56.6
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1110.5 1055 57.7
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1109.7 1062 56.6
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 0.0e+00 1109.4 1083 56.7
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 0.0e+00 1109.0 1065 56.9
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 0.0e+00 1109.0 1031 58.4
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 0.0e+00 1104.0 1068 56.8
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 0.0e+00 1103.6 1063 56.2
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1100.5 1064 56.2
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1095.9 1063 56.5
Phvul.001G229600 Phaseolus vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1095.5 1065 55.8
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 0.0e+00 1094.7 1063 56.0
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 0.0e+00 1093.6 1005 57.3
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 0.0e+00 1090.5 996 58.2
Aqoxy2G03929 Aquilegia oxysepala HOM05D005365 ORTHO05D006910 0.0e+00 1087.4 1066 54.5
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 0.0e+00 1085.5 1064 56.2
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 0.0e+00 1084.7 1065 54.8
Ca_17092_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 0.0e+00 1083.6 1064 55.5
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 0.0e+00 1081.2 1066 56.7
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 0.0e+00 1080.5 1063 56.9
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 0.0e+00 1076.6 1066 56.5
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 1.5e-311 1072.8 1053 56.3
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 5.2e-311 1071.2 971 58.3
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 4.3e-310 1068.1 1056 54.9
Psat5g120520 Pisum sativum HOM05D005365 ORTHO05D006910 6.2e-309 1064.3 1050 55.9
Medtr3g065300 Medicago truncatula HOM05D005365 ORTHO05D006910 8.9e-308 1060.4 1063 54.9
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 3.4e-307 1058.5 1067 54.7
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 1.3e-306 1056.6 1067 54.5
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 1.3e-303 1046.6 1051 54.4
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 6.6e-303 1044.3 1069 54.4
PGR004G1341 Punica granatum HOM05D005365 ORTHO05D006910 1.1e-302 1043.5 1074 53.9
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 1.6e-301 1039.6 1092 55.0
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 3.6e-301 1038.5 1051 54.0
Eucgr.F02871 Eucalyptus grandis HOM05D005365 ORTHO05D006910 3.6e-301 1038.5 1063 54.1
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 4.9e-298 1028.1 1076 53.2
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 3.3e-294 1015.4 1071 51.8
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 2.1e-293 1012.7 1084 52.9
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 4.8e-293 1011.5 1060 53.0
Ca_17099_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 6.2e-293 1011.1 1064 53.3
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 1.1e-289 1000.3 1073 52.4
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 1.4e-289 1000.0 1080 52.3
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 3.2e-289 998.8 1070 52.8
Hund13093 Selenicereus undatus HOM05D005365 ORTHO05D006910 4.6e-288 995.0 1064 52.3
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 1.0e-287 993.8 1062 53.0
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 1.0e-287 993.8 1062 53.0
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 1.3e-287 993.4 1080 52.1
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 1.8e-287 993.0 1072 53.2
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 5.1e-287 991.5 1076 52.6
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 5.1e-287 991.5 1065 52.1
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 1.9e-286 989.6 1076 52.5
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 7.4e-286 987.6 1070 51.4
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 8.1e-285 984.2 1101 51.5
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 3.0e-279 965.7 970 54.9
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 6.5e-274 948.0 1059 49.8
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 7.9e-264 914.4 877 54.8
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 2.3e-263 912.9 995 52.2
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 5.5e-257 891.7 785 59.5
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 4.7e-256 888.6 1209 45.7
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 1.0e-255 887.5 785 59.4
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 1.5e-254 883.6 816 56.1
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 5.7e-254 881.7 786 58.4
Sc11g0004580 Simmondsia chinensis HOM05D005365 ORTHO05D006910 8.0e-248 861.3 784 56.9
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 4.1e-244 849.0 779 57.3
Rhsim10G0178300 Rhododendron simsii HOM05D005365 ORTHO05D006910 1.7e-242 843.6 1073 48.3
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 1.2e-224 784.3 1062 45.3
Actinidia17204 Actinidia chinensis HOM05D005365 ORTHO05D006910 2.1e-216 756.9 632 60.9
Dinv28185 Davidia involucrata HOM05D005365 ORTHO05D006910 1.6e-211 740.7 595 64.4
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 1.9e-209 733.8 645 60.2
Pp3c22_14670 Physcomitrium patens HOM05D005365 ORTHO05D006910 5.4e-188 662.5 1084 39.4
HPP92_006138 Vanilla planifolia HOM05D005365 ORTHO05D006910 1.0e-186 658.3 651 53.9
TPR.G24911 Trifolium pratense HOM05D005365 ORTHO05D006910 6.4e-181 639.0 599 55.4
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 8.4e-173 612.1 692 49.7
Mapoly0032s0119 Marchantia polymorpha HOM05D005365 ORTHO05D006910 2.1e-168 597.4 923 40.4
SMO367G0263 Selaginella moellendorffii HOM05D005365 ORTHO05D006910 5.7e-161 572.8 954 36.9
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05D005365 ORTHO05D006910 1.3e-154 551.6 1003 36.3
SGA_v2.0_scaffold45G17195 Striga asiatica HOM05D005365 ORTHO05D006910 1.2e-150 538.5 350 82.6
GSVIVG01038363001 Vitis vinifera HOM05D005365 ORTHO05D006910 6.9e-143 512.7 429 60.8
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 1.8e-130 471.5 650 44.6
Oeu012492.1 Olea europaea HOM05D005365 ORTHO05D006910 2.3e-101 374.8 788 38.2
GSVIVG01038362001 Vitis vinifera HOM05D005365 ORTHO05D006910 3.0e-85 321.2 287 59.2
SEGI_18021 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 1.1e-84 319.3 355 49.3
Oeu012494.1 Olea europaea HOM05D005365 ORTHO05D006910 9.5e-84 316.2 257 64.6
Os06g0256000 Oryza sativa ssp. japonica HOM05D005365 ORTHO05D006910 3.0e-77 294.7 400 45.2
MCO13G329 Micromonas commoda HOM05D005365 ORTHO05D006910 1.4e-74 285.8 988 26.6
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 7.8e-70 270.0 272 50.7
CBR_g39392 Chara braunii HOM05D000019 ORTHO05D000048 4.0e-66 257.7 1641 20.2
CDE05G3412 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 2.4e-63 248.4 243 53.9
PRCOL_00005851 Prasinoderma coloniale HOM05D005365 ORTHO05D006910 1.9e-60 238.8 932 27.4
CAN.G691.4 Capsicum annuum HOM05D005365 ORTHO05D006910 4.8e-59 234.2 298 48.3
MBI19_g43231_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 2.0e-57 228.8 273 48.4
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 9.9e-57 226.5 195 55.9
TPR.G674 Trifolium pratense HOM05D005365 ORTHO05D006910 2.1e-46 192.2 262 52.3
SGA_v2.0_scaffold45G17196 Striga asiatica HOM05D005365 ORTHO05D006910 1.4e-39 169.5 144 67.4
HPP92_006139 Vanilla planifolia HOM05D005365 ORTHO05D006910 5.5e-39 167.5 270 47.4
GSVIVG01030692001 Vitis vinifera HOM05D005365 ORTHO05D006910 4.1e-34 151.4 173 52.0
Psat1g154520 Pisum sativum HOM05D005365 ORTHO05D006910 2.8e-19 102.1 85 61.2
Nn1g00453 Nelumbo nucifera HOM05D005365 ORTHO05D006910 3.1e-18 98.6 62 71.0
Gorai.005G096400 Gossypium raimondii HOM05D005365 ORTHO05D015145 1.5e-15 89.7 68 64.7
Gohir.D04G112220 Gossypium hirsutum HOM05D005365 ORTHO05D006910 1.9e-15 89.4 67 65.7
Psat7g195800 Pisum sativum HOM05D005365 ORTHO05D006910 1.4e-13 83.2 78 55.1
GSVIVG01030691001 Vitis vinifera HOM05D005365 ORTHO05D006910 3.4e-12 78.6 70 50.0
Cfa023924 Carpinus fangiana HOM05D005365 ORTHO05D006910 2.4e-10 72.4 342 22.8
TPR.G7041 Trifolium pratense HOM05D005365 ORTHO05D006910 3.1e-10 72.0 51 66.7
SEGI_04861 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 3.8e-08 65.1 166 33.1
Gohir.D09G013833 Gossypium hirsutum HOM05D005365 ORTHO05D015145 4.2e-07 61.6 45 66.7
Thhalv10028211m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 3.6e-06 58.5 64 45.3


User provided reference genes

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