Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold45G17152 Striga asiatica HOM05D008015 ORTHO05D009180 2.6e-98 362.1 183 100.0
MSTRG.3702 Avicennia marina HOM05D008015 ORTHO05D009180 2.0e-26 123.2 191 44.0
SalBow5G5173 Salvia bowleyana HOM05D008015 ORTHO05D009180 4.8e-20 102.1 161 45.3
Cc07_g13270 Coffea canephora HOM05D008015 ORTHO05D009180 5.3e-19 98.6 164 40.9
Oeu032314.1 Olea europaea HOM05D008015 ORTHO05D009180 3.8e-17 92.4 135 43.7
Duzib268G1603 Durio zibethinus HOM05D008015 ORTHO05D009180 4.9e-17 92.0 185 41.1
TAR371G1005 Trochodendron aralioides HOM05D008015 ORTHO05D009180 7.1e-16 88.2 186 39.8
Nn4g24386 Nelumbo nucifera HOM05D008015 ORTHO05D009180 1.6e-15 87.0 192 39.6
QL02p059324 Quercus lobata HOM05D008015 ORTHO05D009180 1.6e-15 87.0 190 36.3
Ciclev10012847m.g Citrus clementina HOM05D008015 ORTHO05D009180 1.3e-14 84.0 183 38.3
DCAR_014163 Daucus carota HOM05D008015 ORTHO05D009180 1.1e-13 80.9 172 37.2
unitig_32.g11793 Utricularia gibba HOM05D008015 ORTHO05D009180 1.1e-13 80.9 175 37.7
CSS0009801 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 1.9e-13 80.1 167 38.3
CSS0018355 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 1.9e-13 80.1 167 38.3
Cfa007792 Carpinus fangiana HOM05D008015 ORTHO05D009180 3.3e-13 79.3 185 37.3
MBI13_g14024_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 3.3e-13 79.3 179 35.2
MBI13_g45895_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 3.3e-13 79.3 181 34.8
Migut.K00921 Erythranthe guttata HOM05D008015 ORTHO05D009180 2.8e-12 76.3 194 36.6
Nn3g18370 Nelumbo nucifera HOM05D008015 ORTHO05D009180 2.8e-12 76.3 187 35.3
TAR629G2519 Trochodendron aralioides HOM05D008015 ORTHO05D009180 2.8e-12 76.3 193 36.3
Potri.004G085100 Populus trichocarpa HOM05D008015 ORTHO05D009180 1.1e-11 74.3 167 38.3
Actinidia28799 Actinidia chinensis HOM05D008015 ORTHO05D009180 1.8e-11 73.6 138 39.9
ClCG03G008850 Citrullus lanatus HOM05D008015 ORTHO05D009180 2.4e-11 73.2 95 43.2
Lalb_Chr17g0346041 Lupinus albus HOM05D008015 ORTHO05D009180 4.1e-11 72.4 154 38.3
MD09G1270500 Malus domestica HOM05D008015 ORTHO05D009180 4.1e-11 72.4 112 42.9
LjContig00141g0001505 Lotus japonicus HOM05D008015 ORTHO05D009180 5.3e-11 72.0 135 38.5
Sed0025761 Sechium edule HOM05D008015 ORTHO05D009180 5.3e-11 72.0 158 35.4
Prupe.3G166400 Prunus persica HOM05D008015 ORTHO05D009180 6.9e-11 71.6 155 40.6
Lalb_Chr18g0053531 Lupinus albus HOM05D008015 ORTHO05D009180 9.0e-11 71.2 158 37.3
Actinidia35723 Actinidia chinensis HOM05D008015 ORTHO05D009180 1.2e-10 70.9 162 35.8
Eucgr.F02874 Eucalyptus grandis HOM05D008015 ORTHO05D009180 1.5e-10 70.5 109 39.4
Medtr3g065210 Medicago truncatula HOM05D008015 ORTHO05D009180 1.5e-10 70.5 167 32.9
TWI77G0273 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 1.5e-10 70.5 93 47.3
MBI19_g08383_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 2.0e-10 70.1 151 39.1
Potri.017G131300 Populus trichocarpa HOM05D008015 ORTHO05D009180 2.6e-10 69.7 148 37.2
VMungo0647G1978 Vigna mungo HOM05D008015 ORTHO05D009180 1.0e-09 67.8 155 34.2
Glyma.14G213100 Glycine max HOM05D008015 ORTHO05D009180 1.3e-09 67.4 158 34.8
RcHm_v2.0_Chr3g0491241 Rosa chinensis HOM05D008015 ORTHO05D009180 1.7e-09 67.0 116 39.7
Psat2g045760 Pisum sativum HOM05D008015 ORTHO05D009180 3.8e-09 65.9 117 40.2
ATR0753G067 Amborella trichopoda HOM05D008015 ORTHO05D009180 5.0e-09 65.5 158 30.4
Glyma.18G041300 Glycine max HOM05D008015 ORTHO05D009180 5.0e-09 65.5 172 33.7
MELO3C022825.2 Cucumis melo HOM05D008015 ORTHO05D009180 6.5e-09 65.1 159 33.3
Lalb_Chr15g0084981 Lupinus albus HOM05D008015 ORTHO05D009180 6.5e-09 65.1 162 34.0
Thecc.04G053900 Theobroma cacao HOM05D008015 ORTHO05D009180 6.5e-09 65.1 191 35.1
CDE05G1037 Ceratophyllum demersum HOM05D008015 ORTHO05D009180 1.1e-08 64.3 146 35.6
Gohir.D07G078200 Gossypium hirsutum HOM05D008015 ORTHO05D009180 1.9e-08 63.5 158 36.1
Manes.02G078100 Manihot esculenta HOM05D008015 ORTHO05D009180 1.9e-08 63.5 110 40.0
PSO478G3758 Papaver somniferum HOM05D008015 ORTHO05D009180 1.9e-08 63.5 112 42.0
CiPaw.03G073500 Carya illinoinensis HOM05D008015 ORTHO05D009180 3.2e-08 62.8 108 38.0
Rhsim10G0178500 Rhododendron simsii HOM05D008015 ORTHO05D009180 3.2e-08 62.8 212 32.1
TWI74G1025 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 3.2e-08 62.8 145 39.3
Cpa.g.sc340.4 Carica papaya HOM05D008015 ORTHO05D009180 7.2e-08 61.6 193 32.6
Gohir.A07G073500 Gossypium hirsutum HOM05D008015 ORTHO05D009180 7.2e-08 61.6 154 35.7
VMungo1383G2632 Vigna mungo HOM05D008015 ORTHO05D009180 7.2e-08 61.6 140 32.9
FvH4_1g30203 Fragaria vesca HOM05D008015 ORTHO05D009180 9.4e-08 61.2 105 40.0
FAN23G1273 Fragaria x ananassa HOM05D008015 ORTHO05D009180 9.4e-08 61.2 214 31.8
Gorai.001G082600 Gossypium raimondii HOM05D008015 ORTHO05D009180 9.4e-08 61.2 154 36.4
CsaV3_5G023910 Cucumis sativus L. HOM05D009275 ORTHO05D009180 1.6e-07 60.5 97 40.2
Phvul.001G229400 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 1.6e-07 60.5 133 32.3
Sabra17G0109400 Salix brachista HOM05D008015 ORTHO05D009180 1.6e-07 60.5 110 39.1
TPR.G30001 Trifolium pratense HOM05D008015 ORTHO05D009180 1.6e-07 60.5 173 34.7
BraA04t16736Z Brassica rapa HOM05D009275 ORTHO05D009180 2.1e-07 60.1 173 34.1
CANSAT35G1526 Cannabis sativa HOM05D008015 ORTHO05D009180 2.7e-07 59.7 154 30.5
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 3.6e-07 59.3 149 32.9
FAN26G1918 Fragaria x ananassa HOM05D008015 ORTHO05D009180 3.6e-07 59.3 212 30.7
A04p10720 Brassica napus HOM05D009275 ORTHO05D009180 4.6e-07 58.9 173 33.5
COL.COLO4_13422 Corchorus olitorius HOM05D009275 ORTHO05D009180 6.1e-07 58.5 98 41.8
Lsat_1_v5_gn_8_114880 Lactuca sativa HOM05D008015 ORTHO05D009180 6.1e-07 58.5 195 31.3
Medtr5g077940 Medicago truncatula HOM05D008015 ORTHO05D009180 7.9e-07 58.2 151 34.4
Actinidia17202 Actinidia chinensis HOM05D008015 ORTHO05D009180 1.0e-06 57.8 145 35.2
AL7G46310 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 1.0e-06 57.8 174 33.9
Glyma.11G215300 Glycine max HOM05D008015 ORTHO05D009180 1.0e-06 57.8 120 37.5
Thhalv10027910m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 1.4e-06 57.4 174 33.9
Aqoxy1G02179 Aquilegia oxysepala HOM05D008015 ORTHO05D009180 1.8e-06 57.0 167 36.5
Sp7g04570 Schrenkiella parvula HOM05D009275 ORTHO05D009180 2.3e-06 56.6 172 33.1
BcaC02g09585 Brassica carinata HOM05D009275 ORTHO05D009180 3.0e-06 56.2 172 33.1
C04p44430 Brassica napus HOM05D009275 ORTHO05D009180 3.0e-06 56.2 172 33.1
BolC4t26014H Brassica oleracea HOM05D009275 ORTHO05D009180 3.0e-06 56.2 172 33.1
Sp5g21250 Schrenkiella parvula HOM05D009275 ORTHO05D009180 5.1e-06 55.5 166 31.3
BcaB06g27100 Brassica carinata HOM05D009275 ORTHO05D009180 6.7e-06 55.1 176 31.2
MBI13_g24899_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 8.8e-06 54.7 93 37.6


User provided reference genes

Program Settings