Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold45G17135 Striga asiatica HOM05D010872 ORTHO05D004477 1.4e-76 289.7 159 100.0
SGA_v2.0_scaffold115G32090 Striga asiatica HOM05D010872 ORTHO05D004477 1.5e-17 93.6 130 50.8
Migut.K01109 Erythranthe guttata HOM05D008046 ORTHO05D004477 1.9e-12 76.6 167 37.7
Oeu048965.1 Olea europaea HOM05D008046 ORTHO05D004477 2.7e-11 72.8 138 37.0
Nn5g30002 Nelumbo nucifera HOM05D008176 ORTHO05D004477 3.5e-11 72.4 153 39.9
SalBow5G1479 Salvia bowleyana HOM05D008046 ORTHO05D004477 1.3e-10 70.5 166 39.2
unitig_32.g11784 Utricularia gibba HOM05D008046 ORTHO05D004477 1.7e-10 70.1 130 46.2
CSS0041686 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.3e-10 69.7 157 42.7
CSS0046665 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 3.0e-10 69.3 157 42.7
Sc23g0000380 Simmondsia chinensis HOM05D008046 ORTHO05D004477 8.7e-10 67.8 143 39.9
Duzib116G0877 Durio zibethinus HOM05D008046 ORTHO05D004477 9.6e-09 64.3 163 43.6
Thecc.08G102400 Theobroma cacao HOM05D008046 ORTHO05D004477 9.6e-09 64.3 167 40.7
MSTRG.3689 Avicennia marina HOM05D008046 ORTHO05D004477 2.1e-08 63.2 160 41.9
TWI12G0518 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 3.6e-08 62.4 142 36.6
Duzib041G0197 Durio zibethinus HOM05D008046 ORTHO05D004477 4.8e-08 62.0 36 75.0
Duzib093G0605 Durio zibethinus HOM05D008046 ORTHO05D004477 4.8e-08 62.0 39 71.8
Phvul.001G253900 Phaseolus vulgaris HOM05D008176 ORTHO05D004477 1.8e-07 60.1 121 35.5
VMungo1383G1959 Vigna mungo HOM05D008176 ORTHO05D004477 1.8e-07 60.1 125 36.8
Manes.18G064000 Manihot esculenta HOM05D008046 ORTHO05D004477 2.4e-07 59.7 45 60.0
GSVIVG01009081001 Vitis vinifera HOM05D008046 ORTHO05D004477 2.4e-07 59.7 141 39.7
Manes.02G149300 Manihot esculenta HOM05D008046 ORTHO05D004477 3.1e-07 59.3 51 52.9
TWI36G0888 Tripterygium wilfordii HOM05D008046 ORTHO05D004477 4.0e-07 58.9 45 60.0
Glyma.02G209200 Glycine max HOM05D008046 ORTHO05D004477 9.0e-07 57.8 49 59.2
Sabra02G0078700 Salix brachista HOM05D008046 ORTHO05D004477 9.0e-07 57.8 32 75.0
Carub.0001s3286 Capsella rubella HOM05D010872 ORTHO05D013672 1.2e-06 57.4 120 40.8
Lalb_Chr10g0102531 Lupinus albus HOM05D008046 ORTHO05D004477 1.2e-06 57.4 50 58.0
Sp1g19950 Schrenkiella parvula HOM05D009138 ORTHO05D011294 1.2e-06 57.4 81 46.9
Sed0027320 Sechium edule HOM05D026294 ORTHO05D004477 1.2e-06 57.4 122 45.9
Cc10_g06700 Coffea canephora HOM05D008046 ORTHO05D004477 1.5e-06 57.0 175 34.9
Potri.002G100500 Populus trichocarpa HOM05D008046 ORTHO05D004477 1.5e-06 57.0 53 54.7
TAR628G0226 Trochodendron aralioides HOM05D008046 ORTHO05D004477 1.5e-06 57.0 120 41.7
Aa31LG6G8650 Aethionema arabicum HOM05D010872 ORTHO05D013672 2.0e-06 56.6 117 42.7
Medtr5g064640 Medicago truncatula HOM05D008046 ORTHO05D004477 2.0e-06 56.6 135 40.7
THA.LOC104816630 Tarenaya hassleriana HOM05D010872 ORTHO05D013672 2.0e-06 56.6 36 72.2
CSS0034401 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.6e-06 56.2 170 30.6
CSS0039341 Camellia sinensis var. sinensis HOM05D008046 ORTHO05D004477 2.6e-06 56.2 172 30.8
Glyma.06G100900 Glycine max HOM05D008046 ORTHO05D004477 2.6e-06 56.2 163 41.1
Gohir.A05G265833 Gossypium hirsutum HOM05D008046 ORTHO05D004477 2.6e-06 56.2 97 41.2
Hma1.2p1_1148F.1_g261600 Hydrangea macrophylla HOM05D008046 ORTHO05D004477 2.6e-06 56.2 138 38.4
Aa31LG7G6390 Aethionema arabicum HOM05D009138 ORTHO05D011294 3.4e-06 55.8 26 84.6
Gorai.002G141100 Gossypium raimondii HOM05D008046 ORTHO05D004477 3.4e-06 55.8 33 69.7
Sp1g29940 Schrenkiella parvula HOM05D010872 ORTHO05D013672 3.4e-06 55.8 34 76.5
AT1G35210 Arabidopsis thaliana HOM05D010872 ORTHO05D013672 4.5e-06 55.5 60 51.7
ClCG11G014290 Citrullus lanatus HOM05D026294 ORTHO05D004477 5.8e-06 55.1 118 44.9
Glyma.14G177400 Glycine max HOM05D008046 ORTHO05D004477 5.8e-06 55.1 50 54.0
QL02p002440 Quercus lobata HOM05D008046 ORTHO05D004477 5.8e-06 55.1 128 44.5
Sed0003502 Sechium edule HOM05D010872 ORTHO05D013672 5.8e-06 55.1 114 39.5
AT1G22470 Arabidopsis thaliana HOM05D009138 ORTHO05D011294 7.6e-06 54.7 37 64.9
BcaB03g13666 Brassica carinata HOM05D010872 ORTHO05D013672 7.6e-06 54.7 130 35.4
BcaC05g27742 Brassica carinata HOM05D010872 ORTHO05D013672 7.6e-06 54.7 135 35.6
C05p37280 Brassica napus HOM05D010872 ORTHO05D013672 7.6e-06 54.7 135 35.6
COL.COLO4_12009 Corchorus olitorius HOM05D008046 ORTHO05D004477 7.6e-06 54.7 170 38.8
Thhalv10001870m.g Eutrema salsugineum HOM05D010872 ORTHO05D013672 9.9e-06 54.3 34 73.5
Glyma.18G015000 Glycine max HOM05D008176 ORTHO05D004477 9.9e-06 54.3 121 35.5
Gohir.D02G084000 Gossypium hirsutum HOM05D008046 ORTHO05D004477 9.9e-06 54.3 37 73.0
Peaxi162Scf00237g00201 Petunia axillaris HOM05D008176 ORTHO05D004477 9.9e-06 54.3 144 32.6
Phvul.008G176900 Phaseolus vulgaris HOM05D008046 ORTHO05D004477 9.9e-06 54.3 56 55.4


User provided reference genes

Program Settings