Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold45G17134 Striga asiatica HOM05D004935 ORTHO05D005676 4.0e-129 464.9 260 100.0
Migut.K01110 Erythranthe guttata HOM05D004935 ORTHO05D005676 1.9e-67 260.0 258 61.2
MSTRG.3688 Avicennia marina HOM05D004935 ORTHO05D005676 1.7e-63 246.9 260 59.2
Rhsim10G0182800 Rhododendron simsii HOM05D004935 ORTHO05D005676 6.9e-57 224.9 256 55.9
FAN28G0886 Fragaria x ananassa HOM05D004935 ORTHO05D005676 1.5e-56 223.8 251 53.4
Hma1.2p1_0034F.1_g021280 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 3.4e-56 222.6 266 54.5
RcHm_v2.0_Chr3g0492651 Rosa chinensis HOM05D004935 ORTHO05D005676 7.7e-56 221.5 233 55.4
FAN26G0615 Fragaria x ananassa HOM05D004935 ORTHO05D005676 1.0e-55 221.1 250 55.6
CSS0027542 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 1.7e-55 220.3 255 54.5
Thecc.04G001700 Theobroma cacao HOM05D004935 ORTHO05D005676 2.9e-55 219.5 250 54.8
vmacro20490 Vaccinium macrocarpon HOM05D004935 ORTHO05D005676 5.0e-55 218.8 249 55.0
FvH4_1g28640 Fragaria vesca HOM05D004935 ORTHO05D005676 1.9e-54 216.9 240 55.8
Dinv28224 Davidia involucrata HOM05D004935 ORTHO05D005676 3.2e-54 216.1 257 52.9
Manes.02G079800 Manihot esculenta HOM05D004935 ORTHO05D005676 1.2e-53 214.2 240 52.5
Potri.004G082300 Populus trichocarpa HOM05D004935 ORTHO05D005676 1.6e-53 213.8 248 53.2
SalBow3G4475 Salvia bowleyana HOM05D004935 ORTHO05D005676 1.6e-53 213.8 233 56.2
Prupe.3G163400 Prunus persica HOM05D004935 ORTHO05D005676 4.7e-53 212.2 246 54.9
CiPaw.03G075500 Carya illinoinensis HOM05D004935 ORTHO05D005676 1.0e-52 211.1 259 51.7
Hma1.2p1_0158F.1_g069850 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 2.3e-52 209.9 271 50.9
Actinidia17180 Actinidia chinensis HOM05D004935 ORTHO05D005676 3.0e-52 209.5 246 52.8
Nitab4.5_0002465g0010 Nicotiana tabacum HOM05D004935 ORTHO05D005676 3.9e-52 209.1 258 48.4
unitig_748.g8451 Utricularia gibba HOM05D004935 ORTHO05D005676 1.1e-51 207.6 256 55.9
Actinidia01601 Actinidia chinensis HOM05D004935 ORTHO05D005676 1.5e-51 207.2 257 51.4
CiPaw.04G048500 Carya illinoinensis HOM05D004935 ORTHO05D005676 1.5e-51 207.2 260 50.4
Dinv19063 Davidia involucrata HOM05D004935 ORTHO05D005676 2.0e-51 206.8 216 56.9
Lj2A514G44 Lonicera japonica HOM05D004935 ORTHO05D005676 2.0e-51 206.8 249 54.6
Aqoxy3G04045 Aquilegia oxysepala HOM05D004935 ORTHO05D005676 2.2e-50 203.4 236 51.3
Manes.01G121800 Manihot esculenta HOM05D004935 ORTHO05D005676 2.2e-50 203.4 233 52.4
Nitab4.5_0001088g0190 Nicotiana tabacum HOM05D004935 ORTHO05D005676 2.2e-50 203.4 243 52.3
QL02p059972 Quercus lobata HOM05D004935 ORTHO05D005676 2.8e-50 203.0 225 54.7
Peaxi162Scf00078g00178 Petunia axillaris HOM05D004935 ORTHO05D005676 3.7e-50 202.6 244 50.0
Duzib138G1863 Durio zibethinus HOM05D004935 ORTHO05D005676 6.3e-50 201.8 225 55.6
PGSC0003DMG400013258 Solanum tuberosum HOM05D004935 ORTHO05D005676 2.4e-49 199.9 251 47.8
Duzib133G0236 Durio zibethinus HOM05D004935 ORTHO05D005676 5.3e-49 198.7 257 52.1
Lj4A255T23 Lonicera japonica HOM05D004935 ORTHO05D005676 7.0e-49 198.4 248 48.4
CANSAT78G0803 Cannabis sativa HOM05D004935 ORTHO05D005676 1.6e-48 197.2 253 48.2
Oeu032311.1 Olea europaea HOM05D004935 ORTHO05D005676 2.6e-48 196.4 237 53.6
Gohir.A07G073800 Gossypium hirsutum HOM05D004935 ORTHO05D005676 3.5e-48 196.1 237 52.3
MD09G1265200 Malus domestica HOM05D004935 ORTHO05D005676 3.5e-48 196.1 252 50.0
Solyc11g011760.3 Solanum lycopersicum HOM05D004935 ORTHO05D005676 7.7e-48 194.9 243 48.6
Nn4g24526 Nelumbo nucifera HOM05D004935 ORTHO05D005676 1.0e-47 194.5 268 48.1
Sopen11g006600 Solanum pennellii HOM05D004935 ORTHO05D005676 1.3e-47 194.1 243 49.0
MD17G1261400 Malus domestica HOM05D004935 ORTHO05D005676 1.7e-47 193.7 250 50.8
MBI13_g35399_MAGBIO Magnolia biondii HOM05D004935 ORTHO05D005676 2.2e-47 193.4 259 48.6
Sabra04G0054800 Salix brachista HOM05D004935 ORTHO05D005676 2.9e-47 193.0 249 49.0
Eucgr.J01625 Eucalyptus grandis HOM05D004935 ORTHO05D005676 3.8e-47 192.6 220 52.7
Oeu029081.1 Olea europaea HOM05D004935 ORTHO05D005676 5.0e-47 192.2 245 52.2
Hund13074 Selenicereus undatus HOM05D004935 ORTHO05D005676 1.1e-46 191.0 264 46.2
THA.LOC104820912 Tarenaya hassleriana HOM05D004935 ORTHO05D005676 1.5e-46 190.7 260 47.3
Actinidia28792 Actinidia chinensis HOM05D004935 ORTHO05D005676 3.2e-46 189.5 256 48.0
arahy.Tifrunner.gnm1.ann1.5XP26J Arachis hypogaea HOM05D004935 ORTHO05D005676 5.5e-46 188.7 223 52.5
TPR.G12527 Trifolium pratense HOM05D004935 ORTHO05D005676 5.5e-46 188.7 241 46.5
Cfa007772 Carpinus fangiana HOM05D004935 ORTHO05D005676 7.2e-46 188.3 315 42.2
Medtr5g091900 Medicago truncatula HOM05D004935 ORTHO05D005676 7.2e-46 188.3 222 48.6
TWI53G1040 Tripterygium wilfordii HOM05D004935 ORTHO05D005676 7.2e-46 188.3 260 50.0
Glyma.18G042900 Glycine max HOM05D004935 ORTHO05D005676 9.4e-46 188.0 223 51.1
ClCG01G008740 Citrullus lanatus HOM05D004935 ORTHO05D005676 2.7e-45 186.4 223 52.0
Ciclev10029179m.g Citrus clementina HOM05D004935 ORTHO05D005676 3.6e-45 186.0 233 51.5
Lj6g0018793 Lotus japonicus HOM05D004935 ORTHO05D005676 6.1e-45 185.3 223 50.7
COL.COLO4_19777 Corchorus olitorius HOM05D004935 ORTHO05D005676 1.4e-44 184.1 232 50.9
Ca_06292_v3 Cicer arietinum L. HOM05D004935 ORTHO05D005676 4.0e-44 182.6 222 49.1
CsaV3_5G024270 Cucumis sativus L. HOM05D004935 ORTHO05D005676 6.7e-44 181.8 223 52.0
Gorai.001G082900 Gossypium raimondii HOM05D004935 ORTHO05D005676 6.7e-44 181.8 237 49.4
Gohir.D07G078500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.5e-43 180.6 237 48.9
TAR622G0462 Trochodendron aralioides HOM05D004935 ORTHO05D005676 2.6e-43 179.9 263 45.2
Atru.chr1.1949 Acer truncatum HOM05D004935 ORTHO05D005676 3.3e-43 179.5 199 54.8
Lalb_Chr10g0104161 Lupinus albus HOM05D004935 ORTHO05D005676 4.4e-43 179.1 242 46.7
MELO3C025122.2 Cucumis melo HOM05D004935 ORTHO05D005676 7.5e-43 178.3 222 51.8
Glyma.11G213800 Glycine max HOM05D004935 ORTHO05D005676 7.5e-43 178.3 222 48.6
Gohir.A11G169300 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.7e-42 177.2 225 48.4
Cc07_g13020 Coffea canephora HOM05D004935 ORTHO05D005676 2.2e-42 176.8 262 46.9
CDE11G1189 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 3.7e-42 176.0 241 46.9
Gorai.007G188100 Gossypium raimondii HOM05D004935 ORTHO05D005676 6.3e-42 175.3 227 47.6
arahy.Tifrunner.gnm1.ann1.8KIW52 Arachis hypogaea HOM05D004935 ORTHO05D005676 1.1e-41 174.5 246 44.7
Lalb_Chr17g0345951 Lupinus albus HOM05D004935 ORTHO05D005676 1.8e-41 173.7 225 46.7
Gohir.D11G175500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 3.1e-41 172.9 227 47.1
PSO170G5471 Papaver somniferum HOM05D004935 ORTHO05D005676 3.1e-41 172.9 221 48.4
CDE05G2820 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 4.1e-41 172.6 241 46.9
PSO407G0171 Papaver somniferum HOM05D004935 ORTHO05D005676 4.1e-41 172.6 222 48.6
Phvul.001G228000 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 7.0e-41 171.8 224 46.4
Lalb_Chr18g0053611 Lupinus albus HOM05D004935 ORTHO05D005676 2.7e-40 169.9 244 45.5
VMungo1383G0526 Vigna mungo HOM05D004935 ORTHO05D005676 5.9e-40 168.7 223 45.7
PGR042G3611 Punica granatum HOM05D004935 ORTHO05D005676 1.0e-39 167.9 241 45.6
Sc11g0004790 Simmondsia chinensis HOM05D004935 ORTHO05D005676 1.0e-39 167.9 263 43.3
Zm00001eb179280 Zea mays HOM05D004935 ORTHO05D005676 1.3e-39 167.5 253 41.5
Zm00001eb041900 Zea mays HOM05D004935 ORTHO05D005676 6.5e-39 165.2 253 41.5
arahy.Tifrunner.gnm1.ann1.63R0A2 Arachis hypogaea HOM05D004935 ORTHO05D005676 1.2e-37 161.0 246 41.5
AT5G16550 Arabidopsis thaliana HOM05D004935 ORTHO05D005676 2.1e-37 160.2 239 43.5
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 6.1e-37 158.7 211 48.3
HPP92_017642 Vanilla planifolia HOM05D004935 ORTHO05D005676 1.0e-36 157.9 206 47.1
AL6G27510 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.8e-36 157.1 253 42.3
LjContig00141g0002036 Lotus japonicus HOM05D004935 ORTHO05D005676 1.8e-36 157.1 244 44.3
BcaC03g18499 Brassica carinata HOM05D004935 ORTHO05D005676 2.3e-36 156.8 246 43.1
A10p22660 Brassica napus HOM05D004935 ORTHO05D005676 3.0e-36 156.4 265 43.0
BraA10t44327Z Brassica rapa HOM05D004935 ORTHO05D005676 3.0e-36 156.4 265 43.0
BcaB01g04976 Brassica carinata HOM05D004935 ORTHO05D005676 5.2e-36 155.6 220 45.9
Carub.0006s1475 Capsella rubella HOM05D004935 ORTHO05D005676 6.8e-36 155.2 249 41.4
BolC9t58894H Brassica oleracea HOM05D004935 ORTHO05D005676 8.8e-36 154.8 232 44.4
Medtr5g077280 Medicago truncatula HOM05D004935 ORTHO05D005676 1.2e-35 154.5 221 46.6
A02p03620 Brassica napus HOM05D004935 ORTHO05D005676 2.0e-35 153.7 255 43.1
C09p60610 Brassica napus HOM05D004935 ORTHO05D005676 2.0e-35 153.7 220 45.5
BolC3t13402H Brassica oleracea HOM05D004935 ORTHO05D005676 4.4e-35 152.5 251 41.4
BcaC04g18869 Brassica carinata HOM05D004935 ORTHO05D005676 5.7e-35 152.1 255 42.7
Psat2g044600 Pisum sativum HOM05D004935 ORTHO05D005676 5.7e-35 152.1 244 42.6
Haze_14300 Corylus avellana HOM05D004935 ORTHO05D005676 7.5e-35 151.8 269 40.5
BraA02t05331Z Brassica rapa HOM05D004935 ORTHO05D005676 9.8e-35 151.4 255 43.5
Lsat_1_v5_gn_8_111520 Lactuca sativa HOM05D004935 ORTHO05D005676 1.7e-34 150.6 260 41.9
Phvul.008G238800 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 2.2e-34 150.2 234 44.9
TPR.G9990 Trifolium pratense HOM05D004935 ORTHO05D005676 2.8e-34 149.8 246 42.3
C03p09070 Brassica napus HOM05D004935 ORTHO05D005676 4.8e-34 149.1 260 40.8
BcaB08g36840 Brassica carinata HOM05D004935 ORTHO05D005676 1.4e-33 147.5 257 41.2
Glyma.02G242200 Glycine max HOM05D004935 ORTHO05D005676 2.4e-33 146.7 196 44.9
arahy.Tifrunner.gnm1.ann1.PKWW5Q Arachis hypogaea HOM05D004935 ORTHO05D005676 1.2e-32 144.4 196 49.5
VMungo0647G1435 Vigna mungo HOM05D004935 ORTHO05D005676 4.5e-32 142.5 234 43.6
EL10Ac2g03209 Beta vulgaris HOM05D004935 ORTHO05D005676 1.0e-31 141.4 188 48.4
BcaC03g18497 Brassica carinata HOM05D004935 ORTHO05D005676 4.2e-30 136.0 226 42.0
C02p08410 Brassica napus HOM05D004935 ORTHO05D005676 4.2e-30 136.0 226 42.0
BolC2t06759H Brassica oleracea HOM05D004935 ORTHO05D005676 4.2e-30 136.0 226 42.0
Oeu014715.1 Olea europaea HOM05D004935 ORTHO05D005676 7.2e-30 135.2 116 64.7
TAR629G3076 Trochodendron aralioides HOM05D004935 ORTHO05D005676 7.2e-30 135.2 253 41.9
Sp6g27610 Schrenkiella parvula HOM05D004935 ORTHO05D005676 3.6e-29 132.9 235 41.3
Thhalv10014473m.g Eutrema salsugineum HOM05D004935 ORTHO05D005676 9.8e-27 124.8 236 39.8
Aa31LG11G13100 Aethionema arabicum HOM05D004935 ORTHO05D005676 1.3e-26 124.4 248 38.7
GSVIVG01026318001 Vitis vinifera HOM05D004935 ORTHO05D005676 1.8e-25 120.6 139 56.8
Sc11g0004530 Simmondsia chinensis HOM05D004935 ORTHO05D005676 4.1e-25 119.4 263 37.3
ECA246G1322 Erigeron canadensis HOM05D004935 ORTHO05D005676 2.7e-24 116.7 175 45.1
Sed0000771 Sechium edule HOM05D004935 ORTHO05D005676 5.9e-24 115.5 257 34.6
HanXRQChr15g0489811 Helianthus annuus HOM05D004935 ORTHO05D005676 1.0e-23 114.8 212 40.6
MSTRG.15645 Avicennia marina HOM05D004935 ORTHO05D005676 3.8e-23 112.8 99 64.6
A03p07850 Brassica napus HOM05D004935 ORTHO05D005676 1.9e-22 110.5 224 37.5
BraA03t10111Z Brassica rapa HOM05D000423 ORTHO05D005676 4.3e-22 109.4 224 38.4
DCAR_003418 Daucus carota HOM05D004935 ORTHO05D005676 1.2e-21 107.8 105 58.1
Peaxi162Scf00085g00527 Petunia axillaris HOM05D004935 ORTHO05D005676 6.1e-21 105.5 91 62.6
FAN19G0113 Fragaria x ananassa HOM05D004935 ORTHO05D005676 1.4e-17 94.4 99 53.5
AL3G36180 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.6e-16 90.9 152 39.5
AL92U10070 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 3.0e-15 86.7 145 41.4
Mapoly0035s0070 Marchantia polymorpha HOM05D004935 ORTHO05D005676 3.0e-15 86.7 239 28.0
CARHR196680 Cardamine hirsuta HOM05D004935 ORTHO05D005676 4.3e-14 82.8 92 63.0
AagrBONN_evm.TU.Sc2ySwM_117.2252 Anthoceros agrestis HOM05D004935 ORTHO05D005676 4.7e-13 79.3 209 27.3
AL6G14310 Arabidopsis lyrata HOM05D000097 ORTHO05D005676 5.2e-12 75.9 145 38.6
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 5.2e-12 75.9 79 55.7
CARHR196690 Cardamine hirsuta HOM05D004935 ORTHO05D005676 6.8e-12 75.5 89 48.3
Cpa.g.sc178.1 Carica papaya HOM05D004935 ORTHO05D005676 8.9e-12 75.1 93 46.2
SEGI_39153 Sequoiadendron giganteum HOM05D004935 ORTHO05D005676 3.4e-11 73.2 110 44.5
DCAR_003417 Daucus carota HOM05D004935 ORTHO05D005676 2.4e-09 67.0 103 43.7
Pp3c25_6290 Physcomitrium patens HOM05D004935 ORTHO05D005676 3.2e-09 66.6 183 30.1
Zm00001eb099130 Zea mays HOM05D004935 ORTHO05D005676 3.2e-09 66.6 140 37.9
EL10Ac2g03210 Beta vulgaris HOM05D004935 ORTHO05D005676 2.1e-08 63.9 55 56.4
CSS0034638 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 6.0e-08 62.4 48 54.2
Pp3c6_9570 Physcomitrium patens HOM05D004935 ORTHO05D005676 6.0e-08 62.4 163 28.2
GSVIVG01001909001 Vitis vinifera HOM05D000258 ORTHO05D000153 1.9e-06 57.4 46 58.7


User provided reference genes

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