Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold45G17118 Striga asiatica HOM05D001733 ORTHO05D013506 1.1e-69 266.5 136 100.0
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 3.7e-09 65.5 45 75.6
Migut.K00740 Erythranthe guttata HOM05D001733 ORTHO05D001882 1.1e-08 63.9 45 71.1
CDE02G0713 Ceratophyllum demersum HOM05D001733 ORTHO05D001882 1.4e-08 63.5 45 73.3
CAN.G1186.7 Capsicum annuum HOM05D001733 ORTHO05D001882 1.8e-08 63.2 34 91.2
AUR62003403 Chenopodium quinoa HOM05D001733 ORTHO05D001882 1.8e-08 63.2 34 91.2
AUR62004774 Chenopodium quinoa HOM05D001733 ORTHO05D001882 1.8e-08 63.2 34 91.2
Nitab4.5_0000143g0530 Nicotiana tabacum HOM05D001733 ORTHO05D001882 1.8e-08 63.2 34 91.2
Nitab4.5_0001198g0330 Nicotiana tabacum HOM05D001733 ORTHO05D001882 1.8e-08 63.2 34 91.2
Solyc11g011960.2 Solanum lycopersicum HOM05D001733 ORTHO05D001882 1.8e-08 63.2 34 91.2
Sopen11g006770 Solanum pennellii HOM05D001733 ORTHO05D001882 1.8e-08 63.2 34 91.2
PGSC0003DMG401013333 Solanum tuberosum HOM05D001733 ORTHO05D001882 1.8e-08 63.2 34 91.2
Aqoxy3G04124 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 2.4e-08 62.8 45 73.3
CDE04G1424 Ceratophyllum demersum HOM05D001733 ORTHO05D001882 2.4e-08 62.8 45 73.3
Potri.004G074400 Populus trichocarpa HOM05D001733 ORTHO05D001882 2.4e-08 62.8 45 73.3
Rhsim08G0020900 Rhododendron simsii HOM05D001733 ORTHO05D001882 2.4e-08 62.8 34 88.2
Sabra04G0049200 Salix brachista HOM05D001733 ORTHO05D001882 2.4e-08 62.8 45 73.3
vmacro18513 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 2.4e-08 62.8 34 88.2
TWI53G0883 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 3.1e-08 62.4 45 68.9
Actinidia28784 Actinidia chinensis HOM05D001733 ORTHO05D001882 4.1e-08 62.0 34 88.2
Lalb_Chr18g0053741 Lupinus albus HOM05D001733 ORTHO05D001882 4.1e-08 62.0 34 88.2
MD09G1278300 Malus domestica HOM05D001733 ORTHO05D001882 4.1e-08 62.0 34 88.2
Manes.01G123000 Manihot esculenta HOM05D001733 ORTHO05D001882 4.1e-08 62.0 34 88.2
Manes.02G080600 Manihot esculenta HOM05D001733 ORTHO05D001882 4.1e-08 62.0 34 88.2
Mapoly0072s0036 Marchantia polymorpha HOM05D001733 ORTHO05D001882 4.1e-08 62.0 34 88.2
Nn3g18506 Nelumbo nucifera HOM05D001733 ORTHO05D001882 4.1e-08 62.0 34 88.2
PSO782G3656 Papaver somniferum HOM05D001733 ORTHO05D001882 4.1e-08 62.0 34 88.2
Prupe.3G015000 Prunus persica HOM05D001733 ORTHO05D001882 4.1e-08 62.0 34 88.2
TPR.G18898 Trifolium pratense HOM05D001733 ORTHO05D001882 4.1e-08 62.0 34 88.2
Aa31LG11G12370 Aethionema arabicum HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
AL3G12860 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
AL6G28390 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
AT3G03250 Arabidopsis thaliana HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
AT5G17310 Arabidopsis thaliana HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
arahy.Tifrunner.gnm1.ann1.F91WU6 Arachis hypogaea HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
EL10Ac4g08931 Beta vulgaris HOM05D001733 ORTHO05D001882 5.3e-08 61.6 34 88.2
BcaC05g29872 Brassica carinata HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
BcaC05g30312 Brassica carinata HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
BcaC09g47739 Brassica carinata HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
A03p08270 Brassica napus HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
A05p43950 Brassica napus HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
C03p09620 Brassica napus HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
C05p63560 Brassica napus HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
BolC5t35024H Brassica oleracea HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
BraA01t04586Z Brassica rapa HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
BraA03t10147Z Brassica rapa HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
BraA05t23131Z Brassica rapa HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
CSS0043880 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 5.3e-08 61.6 34 85.3
Carub.0006s1550 Capsella rubella HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
CARHR077270 Cardamine hirsuta HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
CiPaw.04G049000 Carya illinoinensis HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
Ca_17067_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
COL.COLO4_19771 Corchorus olitorius HOM05D001733 ORTHO05D001882 5.3e-08 61.6 34 85.3
Duzib138G1439 Durio zibethinus HOM05D001733 ORTHO05D001882 5.3e-08 61.6 34 85.3
Thhalv10013449m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
Glyma.02G241100 Glycine max HOM05D001733 ORTHO05D001882 5.3e-08 61.6 34 85.3
Glyma.11G210989 Glycine max HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
Glyma.14G210700 Glycine max HOM05D001733 ORTHO05D001882 5.3e-08 61.6 34 85.3
Glyma.18G044400 Glycine max HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
Lj2A512T37 Lonicera japonica HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
Medtr3g064480 Medicago truncatula HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
Medtr5g077000 Medicago truncatula HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
Oeu012522.2 Olea europaea HOM05D001733 ORTHO05D001882 5.3e-08 61.6 34 85.3
Os02g0117700 Oryza sativa ssp. japonica HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
Phvul.008G240600 Phaseolus vulgaris HOM05D001733 ORTHO05D001882 5.3e-08 61.6 34 85.3
Psat2g043240 Pisum sativum HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
Sabra15G0083200 Salix brachista HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
Sabra17G0121200 Salix brachista HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
Sp6g26920 Schrenkiella parvula HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
Sed0007038 Sechium edule HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
Sed0017083 Sechium edule HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
Solyc05g054060.3 Solanum lycopersicum HOM05D001733 ORTHO05D001882 5.3e-08 61.6 34 85.3
Sopen05g032550 Solanum pennellii HOM05D001733 ORTHO05D001882 5.3e-08 61.6 34 85.3
THA.LOC104820859 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
Thecc.04G000500 Theobroma cacao HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
TAR622G0535 Trochodendron aralioides HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
vmacro20476 Vaccinium macrocarpon HOM05D001733 ORTHO05D013506 5.3e-08 61.6 34 85.3
vmacro22734 Vaccinium macrocarpon HOM05D001733 ORTHO05D013506 5.3e-08 61.6 34 85.3
VMungo0647G0783 Vigna mungo HOM05D001733 ORTHO05D001882 5.3e-08 61.6 34 85.3
GSVIVG01026563001 Vitis vinifera HOM05D001733 ORTHO05D001882 5.3e-08 61.6 34 85.3
Zm00001eb230070 Zea mays HOM05D001733 ORTHO05D001882 5.3e-08 61.6 45 71.1
Cfa007757 Carpinus fangiana HOM05D001733 ORTHO05D001882 7.0e-08 61.2 45 68.9
Ciclev10011657m.g Citrus clementina HOM05D001733 ORTHO05D001882 7.0e-08 61.2 45 68.9
Haze_14315 Corylus avellana HOM05D001733 ORTHO05D001882 7.0e-08 61.2 45 68.9
Peaxi162Scf00990g00128 Petunia axillaris HOM05D001733 ORTHO05D001882 7.0e-08 61.2 67 53.7
Pp3c11_690 Physcomitrium patens HOM05D001733 ORTHO05D001882 7.0e-08 61.2 45 71.1
Pp3c1_140 Physcomitrium patens HOM05D001733 ORTHO05D001882 7.0e-08 61.2 45 71.1
Potri.017G144700 Populus trichocarpa HOM05D001733 ORTHO05D001882 7.0e-08 61.2 45 71.1
PGR042G3423 Punica granatum HOM05D001733 ORTHO05D001882 7.0e-08 61.2 45 68.9
Rhsim10G0185000 Rhododendron simsii HOM05D001733 ORTHO05D001882 7.0e-08 61.2 45 68.9
SalBow5G0948 Salvia bowleyana HOM05D001733 ORTHO05D001882 7.0e-08 61.2 45 68.9
SalBow5G5318 Salvia bowleyana HOM05D001733 ORTHO05D001882 7.0e-08 61.2 45 68.9
Sp3g02280 Schrenkiella parvula HOM05D001733 ORTHO05D001882 7.0e-08 61.2 45 71.1
SEGI_07069 Sequoiadendron giganteum HOM05D001733 ORTHO05D001882 7.0e-08 61.2 45 68.9
SEGI_33272 Sequoiadendron giganteum HOM05D001733 ORTHO05D001882 7.0e-08 61.2 45 68.9
TWI77G0925 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 7.0e-08 61.2 45 66.7
vmacro20474 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 7.0e-08 61.2 45 68.9
Dinv19076 Davidia involucrata HOM05D001733 ORTHO05D001882 9.1e-08 60.8 34 85.3
Thhalv10020665m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 9.1e-08 60.8 45 68.9
LjContig00141g0019465 Lotus japonicus HOM05D001733 ORTHO05D001882 9.1e-08 60.8 45 71.1
Lalb_Chr15g0085251 Lupinus albus HOM05D001733 ORTHO05D001882 9.1e-08 60.8 45 71.1
Actinidia35712 Actinidia chinensis HOM05D001733 ORTHO05D001882 1.2e-07 60.5 34 85.3
CANSAT54G2999 Cannabis sativa HOM05D001733 ORTHO05D001882 1.2e-07 60.5 45 71.1
unitig_748.g7251 Utricularia gibba HOM05D001733 ORTHO05D001882 1.2e-07 60.5 45 73.3
Atru.chr1.2162 Acer truncatum HOM05D001733 ORTHO05D001882 1.5e-07 60.1 45 68.9
Carub.0003s0240 Capsella rubella HOM05D001733 ORTHO05D001882 1.5e-07 60.1 45 68.9
CAN.G449.11 Capsicum annuum HOM05D001733 ORTHO05D001882 1.5e-07 60.1 45 68.9
Cpa.g.sc178.21 Carica papaya HOM05D001733 ORTHO05D001882 1.5e-07 60.1 45 66.7
DCAR_014145 Daucus carota HOM05D001733 ORTHO05D001882 1.5e-07 60.1 34 82.4
ECA246G3382 Erigeron canadensis HOM05D001733 ORTHO05D001882 1.5e-07 60.1 34 85.3
Eucgr.F02905 Eucalyptus grandis HOM05D001733 ORTHO05D001882 1.5e-07 60.1 45 68.9
FAN26G3480 Fragaria x ananassa HOM05D001733 ORTHO05D001882 1.5e-07 60.1 45 66.7
HanXRQChr15g0482381 Helianthus annuus HOM05D001733 ORTHO05D001882 1.5e-07 60.1 34 85.3
HanXRQChr16g0532261 Helianthus annuus HOM05D001733 ORTHO05D001882 1.5e-07 60.1 34 85.3
Lsat_1_v5_gn_3_67140 Lactuca sativa HOM05D001733 ORTHO05D001882 1.5e-07 60.1 34 82.4
Lsat_1_v5_gn_4_60761 Lactuca sativa HOM05D001733 ORTHO05D001882 1.5e-07 60.1 34 82.4
MBI06_g07519_MAGBIO Magnolia biondii HOM05D001733 ORTHO05D001882 1.5e-07 60.1 45 68.9
Os09g0553200 Oryza sativa ssp. japonica HOM05D001733 ORTHO05D001882 1.5e-07 60.1 45 68.9
PGR004G2261 Punica granatum HOM05D001733 ORTHO05D001882 1.5e-07 60.1 45 68.9
QL02p064794 Quercus lobata HOM05D001733 ORTHO05D001882 1.5e-07 60.1 45 66.7
Zm00001eb104400 Zea mays HOM05D001733 ORTHO05D001882 1.5e-07 60.1 45 68.9
Zm00001eb320800 Zea mays HOM05D001733 ORTHO05D001882 1.5e-07 60.1 45 68.9
ATR0807G128 Amborella trichopoda HOM05D001733 ORTHO05D001882 2.0e-07 59.7 45 68.9
BcaB01g05211 Brassica carinata HOM05D001733 ORTHO05D000183 2.0e-07 59.7 45 68.9
CiPaw.03G076600 Carya illinoinensis HOM05D001733 ORTHO05D001882 2.0e-07 59.7 45 66.7
Dinv28238 Davidia involucrata HOM05D001733 ORTHO05D001882 2.0e-07 59.7 45 66.7
Gohir.A11G169600 Gossypium hirsutum HOM05D001733 ORTHO05D001882 2.0e-07 59.7 34 82.4
Gorai.003G092100 Gossypium raimondii HOM05D001733 ORTHO05D001882 2.0e-07 59.7 34 82.4
Gorai.007G188400 Gossypium raimondii HOM05D001733 ORTHO05D001882 2.0e-07 59.7 34 82.4
Gorai.011G181500 Gossypium raimondii HOM05D001733 ORTHO05D004670 2.0e-07 59.7 34 82.4
RcHm_v2.0_Chr3g0488851 Rosa chinensis HOM05D001733 ORTHO05D001882 2.0e-07 59.7 34 79.4
Hund06872 Selenicereus undatus HOM05D001733 ORTHO05D001882 2.0e-07 59.7 34 85.3
MELO3C020244.2 Cucumis melo HOM05D001733 ORTHO05D001882 2.6e-07 59.3 45 66.7
CsaV3_3G021110 Cucumis sativus L. HOM05D001733 ORTHO05D001882 2.6e-07 59.3 45 66.7
DCAR_003411 Daucus carota HOM05D001733 ORTHO05D001882 2.6e-07 59.3 34 85.3
FvH4_1g27720 Fragaria vesca HOM05D001733 ORTHO05D001882 2.6e-07 59.3 34 79.4
FAN19G1940 Fragaria x ananassa HOM05D001733 ORTHO05D001882 2.6e-07 59.3 34 79.4
FAN28G2921 Fragaria x ananassa HOM05D001733 ORTHO05D001882 2.6e-07 59.3 34 79.4
Gohir.D11G175800 Gossypium hirsutum HOM05D001733 ORTHO05D001882 2.6e-07 59.3 34 82.4
Hund22202 Selenicereus undatus HOM05D001733 ORTHO05D001882 2.6e-07 59.3 45 66.7
THA.LOC104802909 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 2.6e-07 59.3 45 68.9
HPP92_003187 Vanilla planifolia HOM05D001733 ORTHO05D001882 2.6e-07 59.3 45 66.7
ClCG05G011350 Citrullus lanatus HOM05D001733 ORTHO05D001882 3.4e-07 58.9 45 66.7
Gohir.A08G038600 Gossypium hirsutum HOM05D001733 ORTHO05D001882 3.4e-07 58.9 34 82.4
Gohir.D08G048800 Gossypium hirsutum HOM05D001733 ORTHO05D001882 3.4e-07 58.9 34 82.4
Gorai.004G048300 Gossypium raimondii HOM05D001733 ORTHO05D001882 3.4e-07 58.9 34 82.4
PSO063G7403 Papaver somniferum HOM05D001733 ORTHO05D001882 3.4e-07 58.9 34 85.3
AagrBONN_evm.TU.Sc2ySwM_228.431 Anthoceros agrestis HOM05D001733 ORTHO05D001882 4.5e-07 58.5 45 66.7
MSTRG.3676 Avicennia marina HOM05D001733 ORTHO05D001882 4.5e-07 58.5 45 66.7
unitig_748.g7021 Utricularia gibba HOM05D001733 ORTHO05D001882 4.5e-07 58.5 31 90.3
Actinidia40419 Actinidia chinensis HOM05D001733 ORTHO05D001882 5.9e-07 58.2 34 85.3
Aqoxy4G00073 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 5.9e-07 58.2 45 68.9
CSS0033291 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 5.9e-07 58.2 34 79.4
Lj4A253T37 Lonicera japonica HOM05D001733 ORTHO05D001882 5.9e-07 58.2 34 79.4
Nn4g24687 Nelumbo nucifera HOM05D001733 ORTHO05D001882 5.9e-07 58.2 45 66.7
Sc09g0004470 Simmondsia chinensis HOM05D001733 ORTHO05D001882 5.9e-07 58.2 45 68.9
BNapus_Darmor_BZH_scaffold_162p00100 Brassica napus HOM05D001733 ORTHO05D001882 7.7e-07 57.8 44 70.5
Cc07_g12830 Coffea canephora HOM05D001733 ORTHO05D001882 7.7e-07 57.8 45 68.9
FAN23G2775 Fragaria x ananassa HOM05D001733 ORTHO05D001882 7.7e-07 57.8 34 76.5
Gohir.D13G140500 Gossypium hirsutum HOM05D001733 ORTHO05D001882 1.0e-06 57.4 34 79.4
Sc20g0000780 Simmondsia chinensis HOM05D001733 ORTHO05D001882 1.0e-06 57.4 45 66.7
CBR_g4484 Chara braunii HOM05D001733 ORTHO05D001882 1.3e-06 57.0 34 79.4
Cc00_g03970 Coffea canephora HOM05D001733 ORTHO05D001882 1.3e-06 57.0 34 79.4
Gohir.D11G243650 Gossypium hirsutum HOM05D001733 ORTHO05D004670 1.7e-06 56.6 34 76.5
Cc00_g09400 Coffea canephora HOM05D001733 ORTHO05D013506 2.2e-06 56.2 45 66.7
Gorai.011G102900 Gossypium raimondii HOM05D001733 ORTHO05D013506 2.2e-06 56.2 50 58.0
Gorai.005G063100 Gossypium raimondii HOM05D001733 ORTHO05D013506 3.8e-06 55.5 50 60.0
Gorai.006G047500 Gossypium raimondii HOM05D001733 ORTHO05D013506 3.8e-06 55.5 34 76.5
Gorai.011G201100 Gossypium raimondii HOM05D001733 ORTHO05D013506 3.8e-06 55.5 34 76.5
Gohir.D10G162298 Gossypium hirsutum HOM05D001733 ORTHO05D013506 5.0e-06 55.1 34 73.5
Gohir.D11G184600 Gossypium hirsutum HOM05D001733 ORTHO05D013506 5.0e-06 55.1 50 58.0
SMO358G0524 Selaginella moellendorffii HOM05D001733 ORTHO05D001882 6.5e-06 54.7 34 85.3
Aa31LG5G13850 Aethionema arabicum HOM05D001733 ORTHO05D001882 8.5e-06 54.3 45 62.2
Cc00_g21940 Coffea canephora HOM05D001733 ORTHO05D013506 8.5e-06 54.3 47 63.8


User provided reference genes

Program Settings