Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold45G17100 Striga asiatica HOM05D004787 ORTHO05D006972 2.1e-294 1015.0 540 100.0
MSTRG.15622 Avicennia marina HOM05D004787 ORTHO05D006972 8.2e-262 906.7 537 89.9
Migut.K00983 Erythranthe guttata HOM05D004787 ORTHO05D006972 8.0e-257 890.2 516 89.7
Hma1.2p1_0034F.1_g021480 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 1.2e-231 806.6 508 81.7
Solyc02g081410.3 Solanum lycopersicum HOM05D004787 ORTHO05D006972 2.0e-231 805.8 508 81.1
SalBow5G5112 Salvia bowleyana HOM05D004787 ORTHO05D006972 3.4e-231 805.1 540 81.7
Sopen02g026040 Solanum pennellii HOM05D004787 ORTHO05D006972 5.8e-231 804.3 508 80.9
PGSC0003DMG400019729 Solanum tuberosum HOM05D004787 ORTHO05D006972 4.9e-230 801.2 508 80.5
Manes.02G082200 Manihot esculenta HOM05D004787 ORTHO05D006972 3.5e-228 795.0 510 80.0
Nn4g24844 Nelumbo nucifera HOM05D004787 ORTHO05D006972 1.0e-227 793.5 510 79.4
CSS0018052 Camellia sinensis var. sinensis HOM05D004787 ORTHO05D006972 1.3e-227 793.1 508 79.7
TAR629G0710 Trochodendron aralioides HOM05D004787 ORTHO05D006972 3.3e-226 788.5 510 79.4
Thecc.04G058600 Theobroma cacao HOM05D004787 ORTHO05D006972 2.1e-225 785.8 537 76.2
Duzib138G0253 Durio zibethinus HOM05D004787 ORTHO05D006972 2.8e-225 785.4 508 79.7
Ca_15115_v3 Cicer arietinum L. HOM05D004787 ORTHO05D006972 4.7e-225 784.6 509 78.8
Psat5g143840 Pisum sativum HOM05D004787 ORTHO05D006972 6.2e-225 784.3 518 78.0
Atru.chr1.1965 Acer truncatum HOM05D004787 ORTHO05D006972 1.1e-224 783.5 508 79.5
Glyma.18G045800 Glycine max HOM05D004787 ORTHO05D006972 1.8e-224 782.7 534 76.6
Gohir.A12G052700 Gossypium hirsutum HOM05D004787 ORTHO05D006972 3.1e-224 781.9 511 79.3
Gorai.008G054500 Gossypium raimondii HOM05D004787 ORTHO05D006972 3.1e-224 781.9 511 79.3
Hund06861 Selenicereus undatus HOM05D004787 ORTHO05D006972 4.0e-224 781.6 538 75.8
Phvul.006G085100 Phaseolus vulgaris HOM05D004787 ORTHO05D006972 5.2e-224 781.2 513 78.6
Gohir.D12G051200 Gossypium hirsutum HOM05D004787 ORTHO05D006972 6.8e-224 780.8 511 79.1
Ciclev10011482m.g Citrus clementina HOM05D004787 ORTHO05D006972 8.9e-224 780.4 510 79.8
Medtr3g064180 Medicago truncatula HOM05D004787 ORTHO05D006972 8.9e-224 780.4 518 77.6
arahy.Tifrunner.gnm1.ann1.0Y5IZW Arachis hypogaea HOM05D004787 ORTHO05D006972 1.5e-223 779.6 510 79.0
Prupe.3G013000 Prunus persica HOM05D004787 ORTHO05D006972 2.6e-223 778.9 509 79.0
MD11G1181900 Malus domestica HOM05D004787 ORTHO05D006972 5.8e-223 777.7 508 78.5
TWI53G0480 Tripterygium wilfordii HOM05D004787 ORTHO05D006972 1.3e-222 776.5 511 78.1
Lalb_Chr18g0053891 Lupinus albus HOM05D004787 ORTHO05D006972 2.2e-222 775.8 509 78.4
QL02p054528 Quercus lobata HOM05D004787 ORTHO05D006972 2.9e-222 775.4 514 78.4
TPR.G37333 Trifolium pratense HOM05D004787 ORTHO05D006972 2.9e-222 775.4 509 78.4
Lj6g0012338 Lotus japonicus HOM05D004787 ORTHO05D006972 3.7e-222 775.0 509 78.4
arahy.Tifrunner.gnm1.ann1.QP3PIR Arachis hypogaea HOM05D004787 ORTHO05D006972 8.3e-222 773.9 514 78.4
CDE05G1440 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 1.1e-221 773.5 503 77.9
Dinv28256 Davidia involucrata HOM05D004787 ORTHO05D006972 1.1e-221 773.5 508 78.7
PSO063G5381 Papaver somniferum HOM05D004787 ORTHO05D006972 1.4e-221 773.1 508 78.3
CsaV3_5G024370 Cucumis sativus L. HOM05D004787 ORTHO05D006972 4.1e-221 771.5 509 77.2
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 7.1e-221 770.8 584 72.6
MELO3C025106.2 Cucumis melo HOM05D004787 ORTHO05D006972 1.6e-220 769.6 509 77.2
PSO782G3524 Papaver somniferum HOM05D004787 ORTHO05D006972 1.6e-220 769.6 508 78.3
PGR004G1381 Punica granatum HOM05D004787 ORTHO05D006972 2.7e-220 768.8 509 77.8
Aqoxy3G04198 Aquilegia oxysepala HOM05D004787 ORTHO05D006972 3.5e-220 768.5 509 77.2
THA.LOC104820926 Tarenaya hassleriana HOM05D004787 ORTHO05D006972 3.5e-220 768.5 509 78.6
Eucgr.F02919 Eucalyptus grandis HOM05D004787 ORTHO05D006972 1.3e-219 766.5 509 78.0
Cfa008000 Carpinus fangiana HOM05D004787 ORTHO05D006972 3.0e-219 765.4 515 77.9
Peaxi162Scf00344g02023 Petunia axillaris HOM05D004787 ORTHO05D006972 6.6e-219 764.2 508 77.6
Lsat_1_v5_gn_3_69520 Lactuca sativa HOM05D004787 ORTHO05D006972 1.5e-218 763.1 513 77.4
ClCG01G008420 Citrullus lanatus HOM05D004787 ORTHO05D006972 3.3e-218 761.9 504 77.2
MBI06_g02537_MAGBIO Magnolia biondii HOM05D004787 ORTHO05D006972 9.5e-218 760.4 552 72.5
ECA246G0632 Erigeron canadensis HOM05D004787 ORTHO05D006972 3.6e-217 758.4 509 76.0
Nitab4.5_0003412g0040 Nicotiana tabacum HOM05D004787 ORTHO05D006972 3.1e-216 755.4 605 68.6
CiPaw.03G008000 Carya illinoinensis HOM05D004787 ORTHO05D006972 6.8e-216 754.2 515 77.1
Potri.004G076600 Populus trichocarpa HOM05D004787 ORTHO05D006972 2.0e-215 752.7 517 75.2
Carub.0003s0181 Capsella rubella HOM05D004787 ORTHO05D006972 2.6e-215 752.3 513 75.6
Thhalv10020476m.g Eutrema salsugineum HOM05D004787 ORTHO05D006972 1.7e-214 749.6 540 72.4
AL3G12100 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 4.9e-214 748.0 513 75.6
Sp3g01740 Schrenkiella parvula HOM05D004787 ORTHO05D006972 6.4e-214 747.7 540 72.8
AT3G02710 Arabidopsis thaliana HOM05D004787 ORTHO05D006972 2.4e-213 745.7 532 73.1
FAN28G1537 Fragaria x ananassa HOM05D004787 ORTHO05D006972 2.7e-212 742.3 512 74.4
Lj4C250G12 Lonicera japonica HOM05D004787 ORTHO05D006972 3.5e-212 741.9 541 72.8
HanXRQChr16g0532401 Helianthus annuus HOM05D004787 ORTHO05D006972 4.6e-212 741.5 508 76.6
RcHm_v2.0_Chr3g0487991 Rosa chinensis HOM05D004787 ORTHO05D006972 6.0e-212 741.1 513 74.5
EL10Ac4g08906 Beta vulgaris HOM05D004787 ORTHO05D006972 6.6e-211 737.6 508 75.4
FvH4_1g27560 Fragaria vesca HOM05D004787 ORTHO05D006972 2.5e-210 735.7 508 75.0
Aa31LG5G13180 Aethionema arabicum HOM05D004787 ORTHO05D006972 3.3e-210 735.3 553 70.5
BolC1t05882H Brassica oleracea HOM05D004787 ORTHO05D006972 4.3e-210 734.9 510 75.1
BraA01t04622Z Brassica rapa HOM05D004787 ORTHO05D006972 1.6e-209 733.0 515 74.4
BNapus_Darmor_BZH_scaffold_99p00220 Brassica napus HOM05D004787 ORTHO05D006972 4.7e-209 731.5 509 74.5
CARHR076710 Cardamine hirsuta HOM05D004787 ORTHO05D006972 6.2e-209 731.1 513 73.9
vmacro20447 Vaccinium macrocarpon HOM05D004787 ORTHO05D006972 6.2e-209 731.1 602 66.3
VMungo0540G0637 Vigna mungo HOM05D004787 ORTHO05D006972 8.1e-209 730.7 513 74.7
FAN19G0382 Fragaria x ananassa HOM05D004787 ORTHO05D006972 3.4e-207 725.3 508 74.2
AUR62037503 Chenopodium quinoa HOM05D004787 ORTHO05D006972 5.8e-207 724.5 508 74.4
Actinidia40400 Actinidia chinensis HOM05D004787 ORTHO05D006972 7.6e-207 724.2 508 75.2
Rhsim07G0211400 Rhododendron simsii HOM05D004787 ORTHO05D006972 9.9e-207 723.8 509 74.9
Haze_14069 Corylus avellana HOM05D004787 ORTHO05D006972 1.9e-205 719.5 516 74.2
CANSAT35G0608 Cannabis sativa HOM05D004787 ORTHO05D006972 4.2e-205 718.4 508 74.2
FAN28G1012 Fragaria x ananassa HOM05D004787 ORTHO05D006972 9.3e-205 717.2 508 73.2
DCAR_003396 Daucus carota HOM05D004787 ORTHO05D006972 1.2e-204 716.8 509 73.5
SEGI_38823 Sequoiadendron giganteum HOM05D004787 ORTHO05D006972 6.0e-204 714.5 509 72.1
FAN26G3076 Fragaria x ananassa HOM05D004787 ORTHO05D006972 7.8e-204 714.1 508 73.0
Ah.04g162910 Amaranthus hybridus HOM05D004787 ORTHO05D006972 1.7e-203 713.0 508 74.0
Sabra04G0050800 Salix brachista HOM05D004787 ORTHO05D006972 3.6e-201 705.3 522 71.1
Nitab4.5_0000483g0190 Nicotiana tabacum HOM05D004787 ORTHO05D006972 5.8e-199 698.0 599 65.3
Sed0001995 Sechium edule HOM05D004787 ORTHO05D006972 1.6e-193 679.9 458 75.8
Os02g0831300 Oryza sativa ssp. japonica HOM05D004787 ORTHO05D006972 9.3e-189 664.1 517 66.0
Zm00001eb259490 Zea mays HOM05D004787 ORTHO05D006972 2.1e-188 662.9 538 64.3
AUR62004748 Chenopodium quinoa HOM05D004787 ORTHO05D006972 7.9e-188 661.0 508 69.7
Hma1.2p1_0034F.1_g021490 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 1.8e-187 659.8 423 80.1
ATR0618G058 Amborella trichopoda HOM05D004787 ORTHO05D006972 3.3e-186 655.6 486 71.2
Mapoly0108s0041 Marchantia polymorpha HOM05D004787 ORTHO05D006972 2.1e-180 636.3 519 64.0
Oeu022144.1 Olea europaea HOM05D004787 ORTHO05D006972 1.3e-179 633.6 397 85.6
COL.COLO4_06952 Corchorus olitorius HOM05D004787 ORTHO05D006972 1.8e-168 596.7 440 71.6
Pp3c23_13180 Physcomitrium patens HOM05D004787 ORTHO05D006972 1.5e-167 593.6 505 60.8
Pp3c23_13183 Physcomitrium patens HOM05D004787 ORTHO05D006972 1.5e-167 593.6 505 60.8
Sc09g0004590 Simmondsia chinensis HOM05D004787 ORTHO05D006972 3.6e-164 582.4 441 70.5
AagrBONN_evm.TU.Sc2ySwM_228.1941__1942 Anthoceros agrestis HOM05D004787 ORTHO05D006972 4.5e-159 565.5 481 62.4
CBR_g66787 Chara braunii HOM05D004787 ORTHO05D006972 1.7e-153 547.0 526 54.6
SMO276G0035 Selaginella moellendorffii HOM05D004787 ORTHO05D006972 5.3e-152 542.0 495 57.4
HPP92_022084 Vanilla planifolia HOM05D004787 ORTHO05D006972 1.2e-151 540.8 381 71.9
BNapus_Darmor_BZH_scaffold_122p00190 Brassica napus HOM05D004787 ORTHO05D006972 1.1e-149 534.3 366 75.4
CAN.G809.96 Capsicum annuum HOM05D004787 ORTHO05D006972 3.6e-148 529.3 332 80.4
Cpa.g.sc108.2 Carica papaya HOM05D004787 ORTHO05D006972 1.2e-138 497.7 327 77.4
Lsat_1_v5_gn_3_69560 Lactuca sativa HOM05D004787 ORTHO05D006972 1.4e-136 490.7 322 78.6
GSVIVG01001945001 Vitis vinifera HOM05D004787 ORTHO05D006972 4.1e-112 409.5 257 79.4
GSVIVG01035282001 Vitis vinifera HOM05D004787 ORTHO05D006972 7.0e-112 408.7 257 79.4
Cre02.g093300 Chlamydomonas reinhardtii HOM05D004787 ORTHO05D006972 1.5e-106 391.0 524 43.5
HanXRQChr16g0532221 Helianthus annuus HOM05D004787 ORTHO05D006972 2.0e-106 390.6 425 57.2
MCO05G673 Micromonas commoda HOM05D004787 ORTHO05D006972 3.0e-102 376.7 540 42.8
AL1G49080 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 6.4e-97 359.0 250 74.8
PRCOL_00000524 Prasinoderma coloniale HOM05D004787 ORTHO05D006972 1.3e-89 334.7 489 40.3
Cc07_g12650 Coffea canephora HOM05D004787 ORTHO05D006972 5.3e-75 286.2 176 83.0
CDE02G3895 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 3.8e-73 280.0 307 53.1
PSO409G0053 Papaver somniferum HOM05D004787 ORTHO05D006972 2.4e-51 207.6 504 34.1
Oeu031707.1 Olea europaea HOM05D004787 ORTHO05D006972 9.1e-51 205.7 118 89.0
PSO339G1514 Papaver somniferum HOM05D004787 ORTHO05D303367 3.4e-50 203.8 509 34.6
Cpa.g.sc108.3 Carica papaya HOM05D004787 ORTHO05D006972 5.9e-50 203.0 170 64.7
Cfa023088 Carpinus fangiana HOM05D004787 ORTHO05D006972 2.0e-45 188.0 507 32.7
PSO478G0028 Papaver somniferum HOM05D004787 ORTHO05D006972 1.6e-39 168.3 304 40.1
PSO675G3772 Papaver somniferum HOM05D004787 ORTHO05D302583 1.5e-37 161.8 456 33.1
Medtr8g023320 Medicago truncatula HOM05D004787 ORTHO05D006972 2.8e-36 157.5 115 69.6
PSO407G0282 Papaver somniferum HOM05D004787 ORTHO05D006972 1.8e-35 154.8 466 32.8
PSO409G0034 Papaver somniferum HOM05D004787 ORTHO05D006972 5.0e-33 146.7 459 32.5
PSO339G2591 Papaver somniferum HOM05D004787 ORTHO05D006972 1.5e-29 135.2 308 37.0
PSO339G2032 Papaver somniferum HOM05D004787 ORTHO05D006972 5.7e-29 133.3 287 38.0
HPP92_022083 Vanilla planifolia HOM05D004787 ORTHO05D006972 1.3e-28 132.1 86 72.1
PSO063G0274 Papaver somniferum HOM05D004787 ORTHO05D006972 6.3e-28 129.8 341 34.6
PSO675G1486 Papaver somniferum HOM05D004787 ORTHO05D006972 3.1e-27 127.5 312 34.0
PSO478G4874 Papaver somniferum HOM05D004787 ORTHO05D006972 1.6e-26 125.2 230 40.9
PSO198G0032 Papaver somniferum HOM05D004787 ORTHO05D006972 7.2e-24 116.3 204 42.2
PSO675G0768 Papaver somniferum HOM05D004787 ORTHO05D302482 1.2e-23 115.5 314 29.9
PSO478G1956 Papaver somniferum HOM05D004787 ORTHO05D006972 4.0e-22 110.5 218 39.9
PSO063G3648 Papaver somniferum HOM05D004787 ORTHO05D006972 5.2e-22 110.2 144 47.2
HanXRQChr16g0532231 Helianthus annuus HOM05D004787 ORTHO05D006972 2.6e-21 107.8 63 81.0
PSO478G2704 Papaver somniferum HOM05D004787 ORTHO05D303020 4.4e-21 107.1 370 30.5
PSO063G5300 Papaver somniferum HOM05D004787 ORTHO05D006972 1.7e-20 105.1 144 45.8
PSO063G0043 Papaver somniferum HOM05D004787 ORTHO05D006972 2.2e-20 104.8 207 40.6
PSO063G1019 Papaver somniferum HOM05D004787 ORTHO05D006972 2.2e-20 104.8 219 39.7
Zm00001eb168130 Zea mays HOM05D004787 ORTHO05D001664 2.2e-20 104.8 74 66.2
PSO541G6299 Papaver somniferum HOM05D004787 ORTHO05D302708 4.8e-20 103.6 323 30.3
PSO541G2889 Papaver somniferum HOM05D004787 ORTHO05D303989 4.5e-18 97.1 249 29.7
PSO063G2684 Papaver somniferum HOM05D004787 ORTHO05D304724 1.7e-17 95.1 362 31.2
PSO063G4343 Papaver somniferum HOM05D004787 ORTHO05D304254 8.6e-17 92.8 362 30.9
PSO170G0972 Papaver somniferum HOM05D004787 ORTHO05D303930 1.2e-15 89.0 337 28.5
PSO384G4943 Papaver somniferum HOM05D004787 ORTHO05D303805 1.8e-14 85.1 255 31.8
PSO384G2298 Papaver somniferum HOM05D004787 ORTHO05D006972 6.3e-12 76.6 161 37.3
RcHm_v2.0_Chr5g0002281 Rosa chinensis HOM05D003404 ORTHO05D029456 6.8e-06 56.6 32 78.1


User provided reference genes

Program Settings