Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 4.3e-108 394.8 221 100.0
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 1.9e-87 326.2 247 79.4
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 6.3e-75 284.6 247 70.0
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 5.3e-74 281.6 246 67.1
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 1.3e-72 276.9 244 69.7
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 5.0e-72 275.0 244 69.3
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 4.2e-71 271.9 245 65.7
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 5.5e-71 271.6 247 66.0
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 5.5e-71 271.6 250 66.0
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 1.6e-70 270.0 246 67.9
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 2.1e-70 269.6 247 66.4
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 2.1e-70 269.6 244 66.4
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 2.1e-70 269.6 256 64.5
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 2.7e-70 269.2 247 66.8
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 4.7e-70 268.5 234 67.1
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 7.9e-70 267.7 248 64.5
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 1.8e-69 266.5 245 66.9
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.8e-69 266.5 245 66.9
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 2.3e-69 266.2 246 65.4
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 3.0e-69 265.8 245 67.3
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 3.9e-69 265.4 242 67.8
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 8.8e-69 264.2 247 67.2
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 2.0e-68 263.1 244 63.9
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 2.6e-68 262.7 248 66.9
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 3.3e-68 262.3 243 65.4
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 9.7e-68 260.8 244 66.0
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 1.3e-67 260.4 247 66.0
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 3.7e-67 258.8 241 66.0
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 3.7e-67 258.8 241 66.0
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 8.2e-67 257.7 248 63.3
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 8.2e-67 257.7 244 66.4
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 1.1e-66 257.3 242 64.0
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.1e-66 257.3 240 65.4
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 2.4e-66 256.1 247 64.4
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 2.4e-66 256.1 245 65.3
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 3.1e-66 255.8 242 63.6
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 1.6e-65 253.4 242 63.6
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 2.0e-65 253.1 246 65.0
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 3.5e-65 252.3 244 64.3
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 5.9e-65 251.5 242 62.8
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 7.7e-65 251.1 236 64.8
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 1.0e-64 250.8 236 64.8
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 1.0e-64 250.8 239 66.1
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 1.0e-64 250.8 240 66.2
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 1.3e-64 250.4 242 62.4
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 1.7e-64 250.0 235 66.4
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 1.7e-64 250.0 241 66.0
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 2.2e-64 249.6 245 61.2
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 2.9e-64 249.2 244 63.5
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 2.9e-64 249.2 240 65.8
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 3.8e-64 248.8 235 65.1
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 5.0e-64 248.4 248 63.7
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 5.0e-64 248.4 244 60.7
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 6.5e-64 248.1 246 59.8
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.1e-63 247.3 246 64.2
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 1.5e-63 246.9 236 63.6
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 1.9e-63 246.5 235 63.4
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 1.9e-63 246.5 245 63.7
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 2.5e-63 246.1 242 61.6
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 2.5e-63 246.1 236 64.0
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 3.2e-63 245.7 247 62.8
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 3.2e-63 245.7 242 62.8
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 4.2e-63 245.4 238 63.4
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 5.5e-63 245.0 246 61.8
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 7.2e-63 244.6 242 60.7
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 7.2e-63 244.6 241 65.1
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 9.4e-63 244.2 245 60.4
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 2.7e-62 242.7 237 64.1
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 2.7e-62 242.7 245 62.0
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 8.0e-62 241.1 248 62.9
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 1.0e-61 240.7 246 60.6
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 1.4e-61 240.4 246 63.0
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 1.8e-61 240.0 247 61.9
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 4.0e-61 238.8 241 63.9
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 5.2e-61 238.4 242 61.2
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 1.5e-60 236.9 235 60.9
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 1.5e-60 236.9 248 61.3
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 2.0e-60 236.5 247 59.9
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 7.5e-60 234.6 246 58.1
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 9.7e-60 234.2 272 56.6
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 9.7e-60 234.2 246 63.0
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.2e-59 233.0 247 59.9
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 2.8e-59 232.6 237 62.4
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 3.7e-59 232.3 247 60.3
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 4.8e-59 231.9 209 58.9
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 6.3e-59 231.5 238 61.8
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 8.2e-59 231.1 250 59.2
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 1.1e-58 230.7 237 62.0
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 1.1e-58 230.7 241 62.2
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 1.4e-58 230.3 237 59.9
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 3.1e-58 229.2 193 64.8
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 5.3e-58 228.4 242 60.3
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 9.1e-58 227.6 235 60.9
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 3.5e-57 225.7 193 64.2
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 7.7e-57 224.6 238 60.5
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 7.7e-57 224.6 241 58.9
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 1.3e-56 223.8 272 55.5
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 5.0e-56 221.9 239 61.1
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 1.1e-55 220.7 239 57.7
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 9.4e-55 217.6 236 59.7
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 3.6e-54 215.7 338 45.0
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 6.1e-54 214.9 236 59.3
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 3.0e-53 212.6 229 52.8
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 5.7e-52 208.4 214 63.1
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 2.2e-51 206.5 241 54.4
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 2.2e-51 206.5 241 55.6
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 2.9e-48 196.1 245 55.1
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 3.8e-48 195.7 288 50.7
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 5.0e-48 195.3 246 52.0
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 6.5e-48 194.9 239 54.0
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 2.5e-47 193.0 245 54.3
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 5.5e-47 191.8 325 44.6
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 1.3e-43 180.6 283 45.6
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 9.2e-42 174.5 239 48.5
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 7.7e-41 171.4 239 47.7
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 8.6e-40 167.9 178 52.8
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.1e-39 167.5 242 49.6
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 7.3e-39 164.9 215 48.8
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 3.7e-35 152.5 220 44.1
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 2.0e-33 146.7 136 61.8
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 4.6e-33 145.6 140 57.9
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 4.6e-33 145.6 195 49.7
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 1.0e-32 144.4 240 46.2
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.5e-31 140.6 234 46.6
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 1.5e-31 140.6 168 58.9
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 1.9e-31 140.2 137 66.4
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 3.1e-29 132.9 115 74.8
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 4.4e-28 129.0 166 54.8
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 5.8e-28 128.6 126 62.7
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 2.2e-27 126.7 218 41.3
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 2.9e-27 126.3 128 59.4
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 1.6e-25 120.6 69 87.0
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 3.5e-25 119.4 97 59.8
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 3.6e-22 109.4 108 62.0
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 8.9e-21 104.8 91 54.9
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 2.9e-19 99.8 248 34.7
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.2e-17 94.4 58 77.6
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 1.2e-17 94.4 78 56.4
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 3.9e-16 89.4 306 34.6
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 2.5e-15 86.7 78 53.8
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 7.3e-15 85.1 82 73.2
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 2.3e-13 80.1 217 30.9
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 3.1e-13 79.7 217 31.8
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 7.1e-10 68.6 239 29.3
Pp3c6_13820 Physcomitrium patens HOM05D005017 ORTHO05D006044 1.0e-08 64.7 159 34.6
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 2.8e-06 56.6 53 56.6


User provided reference genes

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